XLOC_040156 (mRNA) -

Overview
NameXLOC_040156
Unique NameXLOC_040156
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000012_pilon:2722969..2729444+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040156 ID=XLOC_040156|Name=XLOC_040156|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6476bp|location=Sequence derived from alignment at sc0000012_pilon:2722969..2729444+ (Clytia hemisphaerica_ch_hm2_pilon)
atggTCGACAACAAGATGATGACACGGTTTTCGTTCAACAACTTGTTGAT
TTTCATTGCAGCCTTTGGCGCTGTTTCTGCATGGACCAGGTACTTAAATC
TTTGATACATTTAGTCATCGTTTTGAAACTTTATTATTTTAGGAGGGGAG
AGATGATAAAAGTTCGCTATTTGAATCTTTACTGATTAGTTGCAGAGTTA
TCTTTCGCTGCTTAAAGAACTTAAACAAAGAAGATACTGTATTTATAGGC
TATAGTCTCTCTGGAGCCGTTCACTTTTAGCAATTCTCTCTTAAAAGCTT
ATACCAAATGTCTTATTGGAACATCCGAGGTCATGTACAAATCTAGTGAA
CTGCAAAGAGGTATCCAATAGTAATTCGTGTCTTTCGATTGTTTATAGAA
ACTATAGGAATGGTGGCCACTCGAATCAGAACGCTCCTGACAACGTGTGG
AAATGGGAATGTAGTCACGAGGCTATTCGAAATTTAACCGTCATACCAAG
ATGTAAAAAAGTTCACCGAAGTGAGGCTAGTTCAAAAGCAACAGAATTGA
GTACCTGTAAATTAACTTGTGGTGAAGCATCAATGCTCTTCCCAAAGCCC
TCAGGTATGGTTTAATTATTTGGTACAAATTCTTTCGAAGAGTCTCTCCT
TTACTTGATAAGTAAACTTTGCCTCTATAAATCGTGAGGTAAAAATTAAT
AAGATTTGTTTGCAATGTTTCCGACAGTATTGCTAGAAGGGTGTTTAAGC
TATTGAATGATTTTGAAAGCCTCAACTAATACTTTCTTACTTTTcaggaa
aaacaaaattgagcaaaaaagTTGTCCCCTTCGCACCATACCGTGTCAAA
TTGTCGACACTGAAATTATCGAAAAACGGAAAATTCACACGTCGTGTCAA
CCAATTAATCCGATTCGCATTCGGTTCCTTCAAACGCACCCTCCATCAGG
GCGTTTACCGCCAACAAGCATACAGAGGGTGGAACTTACAAGGCCGTACA
ATAGAATCCTCTAAAAGAAGTATGGAAATCTCGATCATTTTGGAAACAAA
TGCTGAGAAACTGACTTTATACACAGACGAAAGTTACAGTCTTAAAGTGA
ACACCAACAACCGTCTCATATCAGTCACAATCAAAGCTAACAATTTCTTT
GGAGCACGACACGCTTTAGAAACATTGTCACAGCTGACAGCTTATCATCA
AGGCCATAACTCATTGCAAATCATTGATTATGCTGATATTTATGACAAGC
CAGCTTACCCATACCGTGGTGTTTTATTGGACACAAGCCGTAATTTCTAC
TCCGTGCCAAGTATAAGGTAAATGTGATTTTCTTTCCCACAAATTTGAGA
GTGAGAGAAATCTATAAACTAATTCTATCCCGTAATTGTACACATCGATc
atataccgtgaaaagcacagctcaaaatcatatatttacgctgtgccgac
gaatcgagattctattcatcgcgcaatcagcgaagacaaaagtaaccatg
acgaccatccaagatcttggatgagcgtcatagtcgatatttttattccc
gtcgttgaaaacacaacttacaaaaagtcatcaatgctttgtaaaaagag
tcagtgatagagaatcataacataagtctgtctattatttcgattcaatt
aaagtgacatttccataattaaaagtttagtaattactgttatacatttg
gagatcatgtaaaagatttctttcgaaataaactcatttcaactacactt
ggaggtttctggggaattcgtaaatagtaaactgcatactgatacagtct
gctagacattaatatggtaatatttgctcttcatcttagattttttctac
agtgattagattgacacatgcgcgataaaatttatattatttgtcttcag
aggttactattttctttgaaaacttaacctctgatactcagggtatcgAT
CATAAACAACTCTACAGGATAACTTAGTAATCATGGACTTTTAGACAGCC
ttttttttGAACCGAGAACCCCTGGATAGCAGCGTTAATATCTTCAACCA
TTCAGCTTTAGCACcgtttcaaaattgttttgtttttgacttaCTTTAGG
AGATTGATCAAAACAATGTCATACAACAAGCTCAATACATTTCATTGGCA
CATCACCGATACACACAGTTTCCCAATCTTCATCAAAGCCGTACCACAAT
TAACACAATACGGAGCTTACTCAAACACCAGAGTTTACACTCCACGACAA
GTCAAGCAAATCGCCGAATACGGACGTCAACATGGCGTTCGGGTCCTTCC
GGAGTTTGACCAGCCTGCACATACAGGCGAAGGTTGGCAATTCGGTGAAA
AAGAAGGACTAGGTAAATTGGCAGTGTGTGTTAACAAAGAACCATGGCAG
AAGTTCTGTTTGGAACCACCATGCGGACAGTTGAATCCAATCAATCAGAA
TCTCTATCATATTTTATCCAAGATTTACAAGGAGTATTTTGATCTCTTCG
ATCCGGATTTGTTTCATGCTGGTAAGTTCTGATATAATATTATTAAATCC
TACGTCTCTTTAGGTATGGTTATCGTTTTGAGTTCAAATCACTGGCATTG
CTAAATATATCTAATGGTTCCTAAACCTATTTCCCAGACTTATCAAATAA
GTAGAAAAGGAAGCGAAGTTTGCTGGTGAGGATACTTTCTGTTAAAGCAT
ATTTTGTTTAAGGTTTCATCAAccaataaagattttttagccTAAACTAG
ACTGTAAAAATAATGTTAAATCTTTTGTATTTTGCACGCATTTTCTAATT
CACTAGATACATGGTCGAGGGCATGTAGGAGAGAACAAAAGAGCGAGGAT
AAACGGATCAGGAAATATaaaagatttttcgattttctccTATTTTGCTG
TGGGAAACgaataaattcttttttcaaaagaaaacataaacgtGTAACCA
TTTCTTTTCATCAACAAATTATATAGATAGTTTTATGCTATTTAGCATTT
TATTAGACGTTTCGTTAATCCTGCTAGCTTTAGTTGCCAGTGGAAAAACA
CCCAGAGGGATAGATACAAATTAATTAGTTTTGGATGTTTTgttaagatt
tcttttgttcttcagGTGGTGATGAAATCAACTTCAATTGCTGGAACACA
ACGAAGGAGATCACTGATTGGCTACACACAAATTACGGTGGccgaaatga
agaagaaatgaTGAGAATGTGGAACCTTTTCTTAGAGGTATAATAAAGAA
TCGCGATTATAATTGCTTATCGAATCGGGGAAGATTTTCCTCTTTGAAAA
TTAGGTCAACGCCTCAAAGGTTGAGTTGTTTTCTACTGACCTATTCCTAA
CAGGGGCACAGAAAATCCGGAGGACTACTATATTCCGTATTTCTACATAT
AACTAAGAAACTCTTTCGTTTGCTTTTTTGGGACTACGATATCTGGATAG
ACAATCTAGAAACTGAACAAGACAAGCAAAGAGCGGGGAGCGGGCTTAGG
CTTCTCTTCTAACAAAAGTTCATTTACGACTATCTGTAAAGGGTTCTAGG
GTAATTTccccccgtgactgccccccggataattaccccccggataattg
ccccgggacagttgcccccgtacaatcgccccctggacaattgcaaccca
gacaattgccccccggacaattgccccccagatgtcaaaagtaaaaaaaa
tgtcaaaatgtatGGTGATCGAGTAACTCGATTTTagccttaatgttctt
ataaaaaacctcatctttgaaatatcctgaatttttttgaagtttcatga
atgaatgaatgaatgaataaataaatcgcACCTGGGTTTTCTCGGAGCCA
AGAATATTAAAGCGAGAACATGAAAGAGCGCCCAACCatcgtcccacctg
agcgttcCACCatcgtcccacttgagcgttccacctgagcgtcccagcAT
CGTCCCACTtaagcgtcccacctgagccaccgtcccacgtcccacttttC
CAGTAAGCCGGCCTCATATcttcttttgttgattttttctatttatttgt
ttttggtcACACATGATTGTTTTACGGTGGGTATATTATGCAGACTATTT
TCTCTGTAATcgtcaaaaagtctctcttggAAAAATCATACAGCATAGCA
TTCTTGAATGCACTTTTCAAGTCTAACaagaaaaatagtcaaaaagacTA
ACGATCACCCGATCAAGAATTGACTCAACGGtgattgtctgaatttcttt
tttttttttttttggggggggggcaattgtccaTGGGGGAATTGTCCGAC
AGGTAATTGTCCTgggggcaattgtcagggggccaattgtcccgggggca
attgtctggggggtaattgtcctggggggaattgtctggggggcaattgt
ctaggggcaattttccggggaaattgtccgggggggaattatccgggggg
caattttcacgggggggggggaattGTCACGGGAGCAATTGTCCTGTCAC
GCTGTAAAGACATACAGGAAATAAGCAGGAGCGGGGAACGGGGTTTATGA
TTGGTTTTGGAATGCGTAGGCTTATTCTAACAACGTAAATGTTTCTTATG
GAGGTTATAGATTGCGTAATATCACACTCGCTGATGTTTTAAATCCAGAG
CTATAATTCTATTCTTTGTTGCTTTTTCAGAAATCATCTAAAAAGATTTA
CGAAGCAAATGATGGCAAAGAAATCCCTCTCATCTTATGGACCAGTAAAA
TGACAAGCATCAAATATTTAAATCGATTCTTAAACCCAAAGCAACACATC
ATCCAGATATGGACATCcacaaaaaaataaaggtaAATTTAATGGAGAGA
CGTTAGAGGTCGAGAAGTCAAGACAAGGACTAAATGTAAAATTTCCATGT
CGTCGAATCCCAAGCAATTTTCTTAAAGTATTTCTTTGCAACCATTGAGC
ATGACTTTCCAATCCCGTTTTTTCTGGGAAAATTACTAAAATAGTTTGGA
AATAACAAAATAGATGAATCATAAACGGTGTCTCTTTCTCCAGGTATTGT
TGATATTGTGAACAATGGTTTCAAAACTATCTTTACCAATTGGAACACAT
TGTATTTGGATTGTGGAGTCGGAAGCTGGGTAGGCGAGgtatgaaataaa
ttttatattgtCTCAGTTATTCAGTCTTTATTGCCAGACCTCCCGGGGGA
ACCCAGCAGACACACAACGCTGTTTAAAcgtctatctaacgttcactgcg
tccatataacgttctattaacgtttaaacaacgttttgtgccagctggga
aggtgGTTAAACACTGAAAGTAGCTGCAACCTTTGATATTCAGTGTGGAA
TATGATATATGGTGGTCAAGGAAAGAGCAATTTGACGTTGTCATTGGAAA
ATGACTGACATAAATTCATGATTTCGGTAAATTTAGTCAAAACTAACAGA
TTAATGAGCACATAAAGTTTGCGTCATTTCATGATTTCCTTGTCACTATC
ATTTATATATACAAAACTATCAATGACATCCTGTACGCATAAACAGCGAT
TCATTTGTGGTTTTCTCTTCTTAaagtttgtgaaaaattagCTTTCCGTT
TTAAAAGATAATGAAGTAATTTGTTACACACTCTGTGGCTAATATTATCA
GGTGTCCCAAAATCAATTGAAACATTTTCCAGAAAACTGAGAGACTGCAC
GTGTTGGATTTCTCACAATTATTATCTTGTTACCAGGGTAACAATTGGTG
CTCACCGTACAAAGACTGGAAACAACTTTATGATAACGATCCAATCAAAA
TCTTGAAAGATCTCAATGTTAACGTCACCGCACAAATCCGAAAGAATATT
TTGGGACAAGAAGCACCACTTTGGTCGGAACAGGTATTGTCCAAATCACT
TATTTTCAGATGTCATTGAAGTTAGGAAAGATAATTGTGTTAGGAACTTC
TAAAATCTCTAGGTTGAAAATAAACATCAACCTTCACGATTAAGCATCAA
TCTGAGGAGATGCTTCCCTTTAGATCACGGTAATCATAAGTAAAACGTTT
CAAGATTCAATAAATACAATTTATTacatataagaacaaactttataagg
cTTCGATCACTGAAATATCAATAACAaattatgaacattttaaggcttat
gCAACACCAGatatcttaggaaaatgaacataaatactcacaaaatgggt
gaaaataagaatatctggatgcttaaaaaaataaaagaacattttctttt
caatcaGGCTGACGAGAGTGTTTCCGAAGCAAAAATCTGGCCCCGTGCTG
CCGCTTTAGCCGAACGTCTATGGACCAATCCCGAACACAATTGGCGTAAA
GCAGAATACAGGCTAGTGTACCATCGTCAGCGTCTTGTTAATCGTGGAAT
ACGGGCTGATGCTTTGCAACCACTGTGGTGTAAACAGAACTCTGGACATT
GTTACTATGACCCAACTGTTGTTTGA

Coding sequence (CDS) from alignment at sc0000012_pilon:2722969..2729444+

>XLOC_040156 ID=XLOC_040156|Name=XLOC_040156|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3944bp|location=Sequence derived from alignment at sc0000012_pilon:2722969..2729444+ (Clytia hemisphaerica_ch_hm2_pilon)
atggTCGACAACAAGATGATGACACGGTTTTCGTTCAACAACTTGTTGAT
TTTCATTGCAGCCTTTGGCGCTGTTTCTGCATGGACCAGatggTCGACAA
CAAGATGATGACACGGTTTTCGTTCAACAACTTGTTGATTTTCATTGCAG
CCTTTGGCGCTGTTTCTGCATGGACCAGAAACTATAGGAATGGTGGCCAC
TCGAATCAGAACGCTCCTGACAACGTGTGGAAATGGGAATGTAGTCACGA
GGCTATTCGAAATTTAACCGTCATACCAAGATGTAAAAAAGTTCACCGAA
GTGAGGCTAGTTCAAAAGCAACAGAATTGAGTACCTGTAAATTAACTTGT
GGTGAAGCATCAATGCTCTTCCCAAAGCCCTCAGAAACTATAGGAATGGT
GGCCACTCGAATCAGAACGCTCCTGACAACGTGTGGAAATGGGAATGTAG
TCACGAGGCTATTCGAAATTTAACCGTCATACCAAGATGTAAAAAAGTTC
ACCGAAGTGAGGCTAGTTCAAAAGCAACAGAATTGAGTACCTGTAAATTA
ACTTGTGGTGAAGCATCAATGCTCTTCCCAAAGCCCTCAGgaaaaacaaa
attgagcaaaaaagTTGTCCCCTTCGCACCATACCGTGTCAAATTGTCGA
CACTGAAATTATCGAAAAACGGAAAATTCACACGTCGTGTCAACCAATTA
ATCCGATTCGCATTCGGTTCCTTCAAACGCACCCTCCATCAGGGCGTTTA
CCGCCAACAAGCATACAGAGGGTGGAACTTACAAGGCCGTACAATAGAAT
CCTCTAAAAGAAGTATGGAAATCTCGATCATTTTGGAAACAAATGCTGAG
AAACTGACTTTATACACAGACGAAAGTTACAGTCTTAAAGTGAACACCAA
CAACCGTCTCATATCAGTCACAATCAAAGCTAACAATTTCTTTGGAGCAC
GACACGCTTTAGAAACATTGTCACAGCTGACAGCTTATCATCAAGGCCAT
AACTCATTGCAAATCATTGATTATGCTGATATTTATGACAAGCCAGCTTA
CCCATACCGTGGTGTTTTATTGGACACAAGCCGTAATTTCTACTCCGTGC
CAAGTATAAGgaaaaacaaaattgagcaaaaaagTTGTCCCCTTCGCACC
ATACCGTGTCAAATTGTCGACACTGAAATTATCGAAAAACGGAAAATTCA
CACGTCGTGTCAACCAATTAATCCGATTCGCATTCGGTTCCTTCAAACGC
ACCCTCCATCAGGGCGTTTACCGCCAACAAGCATACAGAGGGTGGAACTT
ACAAGGCCGTACAATAGAATCCTCTAAAAGAAGTATGGAAATCTCGATCA
TTTTGGAAACAAATGCTGAGAAACTGACTTTATACACAGACGAAAGTTAC
AGTCTTAAAGTGAACACCAACAACCGTCTCATATCAGTCACAATCAAAGC
TAACAATTTCTTTGGAGCACGACACGCTTTAGAAACATTGTCACAGCTGA
CAGCTTATCATCAAGGCCATAACTCATTGCAAATCATTGATTATGCTGAT
ATTTATGACAAGCCAGCTTACCCATACCGTGGTGTTTTATTGGACACAAG
CCGTAATTTCTACTCCGTGCCAAGTATAAGGAGATTGATCAAAACAATGT
CATACAACAAGCTCAATACATTTCATTGGCACATCACCGATACACACAGT
TTCCCAATCTTCATCAAAGCCGTACCACAATTAACACAATACGGAGCTTA
CTCAAACACCAGAGTTTACACTCCACGACAAGTCAAGCAAATCGCCGAAT
ACGGACGTCAACATGGCGTTCGGGTCCTTCCGGAGTTTGACCAGCCTGCA
CATACAGGCGAAGGTTGGCAATTCGGTGAAAAAGAAGGACTAGGTAAATT
GGCAGTGTGTGTTAACAAAGAACCATGGCAGAAGTTCTGTTTGGAACCAC
CATGCGGACAGTTGAATCCAATCAATCAGAATCTCTATCATATTTTATCC
AAGATTTACAAGGAGTATTTTGATCTCTTCGATCCGGATTTGTTTCATGC
TGGAGATTGATCAAAACAATGTCATACAACAAGCTCAATACATTTCATTG
GCACATCACCGATACACACAGTTTCCCAATCTTCATCAAAGCCGTACCAC
AATTAACACAATACGGAGCTTACTCAAACACCAGAGTTTACACTCCACGA
CAAGTCAAGCAAATCGCCGAATACGGACGTCAACATGGCGTTCGGGTCCT
TCCGGAGTTTGACCAGCCTGCACATACAGGCGAAGGTTGGCAATTCGGTG
AAAAAGAAGGACTAGGTAAATTGGCAGTGTGTGTTAACAAAGAACCATGG
CAGAAGTTCTGTTTGGAACCACCATGCGGACAGTTGAATCCAATCAATCA
GAATCTCTATCATATTTTATCCAAGATTTACAAGGAGTATTTTGATCTCT
TCGATCCGGATTTGTTTCATGCTGGTGGTGATGAAATCAACTTCAATTGC
TGGAACACAACGAAGGAGATCACTGATTGGCTACACACAAATTACGGTGG
ccgaaatgaagaagaaatgaTGAGAATGTGGAACCTTTTCTTAGAGGTGG
TGATGAAATCAACTTCAATTGCTGGAACACAACGAAGGAGATCACTGATT
GGCTACACACAAATTACGGTGGccgaaatgaagaagaaatgaTGAGAATG
TGGAACCTTTTCTTAGAGAAATCATCTAAAAAGATTTACGAAGCAAATGA
TGGCAAAGAAATCCCTCTCATCTTATGGACCAGTAAAATGACAAGCATCA
AATATTTAAATCGATTCTTAAACCCAAAGCAACACATCATCCAGATATGG
ACATCcacaaaaaaataaagAAATCATCTAAAAAGATTTACGAAGCAAAT
GATGGCAAAGAAATCCCTCTCATCTTATGGACCAGTAAAATGACAAGCAT
CAAATATTTAAATCGATTCTTAAACCCAAAGCAACACATCATCCAGATAT
GGACATCcacaaaaaaataaagGTATTGTTGATATTGTGAACAATGGTTT
CAAAACTATCTTTACCAATTGGAACACATTGTATTTGGATTGTGGAGTCG
GAAGCTGGGTAGGCGAGGTATTGTTGATATTGTGAACAATGGTTTCAAAA
CTATCTTTACCAATTGGAACACATTGTATTTGGATTGTGGAGTCGGAAGC
TGGGTAGGCGAGGGTAACAATTGGTGCTCACCGTACAAAGACTGGAAACA
ACTTTATGATAACGATCCAATCAAAATCTTGAAAGATCTCAATGTTAACG
TCACCGCACAAATCCGAAAGAATATTTTGGGACAAGAAGCACCACTTTGG
TCGGAACAGGGTAACAATTGGTGCTCACCGTACAAAGACTGGAAACAACT
TTATGATAACGATCCAATCAAAATCTTGAAAGATCTCAATGTTAACGTCA
CCGCACAAATCCGAAAGAATATTTTGGGACAAGAAGCACCACTTTGGTCG
GAACAGGCTGACGAGAGTGTTTCCGAAGCAAAAATCTGGCCCCGTGCTGC
CGCTTTAGCCGAACGTCTATGGACCAATCCCGAACACAATTGGCGTAAAG
CAGAATACAGGCTAGTGTACCATCGTCAGCGTCTTGTTAATCGTGGAATA
CGGGCTGATGCTTTGCAACCACTGTGGTGTAAACAGAACTCTGGACATTG
TTACTATGACCCAACTGTTGTTTGAGCTGACGAGAGTGTTTCCGAAGCAA
AAATCTGGCCCCGTGCTGCCGCTTTAGCCGAACGTCTATGGACCAATCCC
GAACACAATTGGCGTAAAGCAGAATACAGGCTAGTGTACCATCGTCAGCG
TCTTGTTAATCGTGGAATACGGGCTGATGCTTTGCAACCACTGTGGTGTA
AACAGAACTCTGGACATTGTTACTATGACCCAACTGTTGTTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_040156XLOC_040156-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012_pilongenomesc0000012_pilon:2722969..2729444 +
Properties
Property NameValue
Aaloc1753-1971:6258
Aaloc1606-1752:5737
Aaloc1513-1605:5046
Aaloc1501-1509:4823
Aaloc1360-1500:4681
Aaloc1240-1359:3118
Aaloc817-1236:2101
Aaloc298-813:800
Aaloc91-294:400
Aaloc1-87:1