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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000204_pilon:95183..99002+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039994 ID=XLOC_039994|Name=XLOC_039994|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3820bp|location=Sequence derived from alignment at sc0000204_pilon:95183..99002+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCgaaatcatttttattgaaaCGGACAGCCAATTTGAATCAAGATGA
GTTGGTCCAACCACAAGGAGATGCTTTAGCACTTGTAAAAAATGAACAGc
gtgaaaacgaaagcgaaagtgatgatgatgaagaaaacCAATGGAGGATC
GGTGAGTTctctcaaatattttcttttcagagcATTTCAGTTGTTTTTCC
AAGTTTATCTCCCGTCAATCTCAGCGAAGTATGAAAAGAGACtttttttG
CCTTAGCATTTagcaaaattcaacaaaattcaacaaaattagaATCTAGG
CTAATTTGTCGTATTGAGTCTATTTTCCGTCTGAGATGAATAACTTTCTT
TGACcattagtagggggccaagcctttttatgaccaaaatagttaCGCCA
TAAGCAAAACTGCAAGGAAAAATGGGTGGgaaaatagctgattttcaggg
atgagctggagtttttacaagatacttcactaattggttatttgaagtaa
tagagatgacgcgttctttagaaaaagtaacaaaattgttttattacatc
ttaacgaccaaccaaatcaaacgagagcttgtaaaaactccagcttgtcc
cgattttcaaaagtaaaaataaacgaaaatgattggtaccatctgaaaga
gcatgaaactctgagcaaaaaaatatattacagcaactctctgactaaaa
cacgcaaagaaatacagccgcttgaagTTCGACGACGACCGACGTCAGTA
CGATTAATCAAATCACAGTaaagctgacagttagttgttCTTTAAGCtgt
tgtatttctttgtgtgttttagttaGAGAATTGTTGTAATACagtttttt
gctcagaatttcatgctctttcagacGGTACCaacattttcgtttatttt
gatttttgaaaatcagctattttcctaccccttattttttCCATgaagtt
ttgcctatggcgtcactattttggtcacaaaaagttttcccgggccttat
ccgcgtcctccctctcaaaaatatcttgtaatatacagTTCTTTGGAACA
GActaaaatggctaggtcgtaaaaaagatgtcacggaaccccaagcttgc
cccccccccctactacatagagaatttttcatcttcatttggTCATTTTA
TACGAAGACGAATTTTCTCATTCCGTTTAAtttacagttgagtctccata
actcgaacacgcaaggGAAATAcagatttgttcgagttaaggaaatttcg
agttatggctTGAGGtatataaggcattgttaactgaagggtcgagtaaa
cttgttcgagttaaggagacattcgagttgtagaggttcgagttaaagag
tatTTTCTACAACGCTTGTCCGAATTCACTCATGTTTATGCCGACATTCA
AGAATTTTTATCTTGACCGTTCGCTTTTACAGTTTCGGAAAATCAGCGTT
AATATTCACGCAgctaataaattgattttttttaatattaacatatttta
attactaattaatttgtttaatttcttgctaattaGCGAAGTAGAATCAT
TCTGAACATGAGTAATTAATTCAAACTGCATGTCCAATCTTTTTAGCTGA
TTTCAAAAGCGACATTTAAATAACTTCAAAAACTGATGTATGGGGACTCC
AACCAATATTTCTTCTCTGTACATTTTGCTTTTTGGATCAGAACTGATTA
CACTCTTCTTTGTTACAttgtacagtagagtctctttaactcgaacctct
ataactcgaatgtctcctttcttcgaacaagttttatggtccacaactag
tctagcaagctagacgactaattcagacatattagaaataaagcaaaaaa
gtaaattttagtcgtctagaaacctttgtgcactaactccaaacaaaaaa
aaagtgtcaatatcgcaattaaaattgtttcccgctcaaaaacaattctt
gaaaacaaaatgtgtgtggatttgtgtgttaaaaatgtttcatttgagtt
gatttcattttgagagtttgttgttgcttaataaattgttttcacGTTTG
TTTTcccgctacgcaagtttctgcgtagctaggcccggtatctataaggc
tggaacaccggattcttccagtcgtttatacaaactaaatcccgtatcat
tatttgtgtttattattagtattatatgcattataaacgactccagtcta
ctccacaactcaaaatttccttaactcgaacaaatttgcgtccCCCCTGC
GTGTTCGAGTTGGTCCTGTCACAagagggcctctaaaccgatcttgtACA
AAAAACCtttttatctttaaggtacagttttatttaattcccaaattttt
tattttcagaaacgGATAGCAAAGTAGATGTTTGCTCATTGGGCGAAGAT
GGCGAAGATGATCGGTCGAGTTTCAGCAGTGAATGTCCAAGCAACACAAG
TGAAAAGGAAAATCATCGTATGGCCACTGAAggtaagaaataaaaaactc
aTCGTCACGTGATCAcgtaaactttttttatctATCACACATCACAAAAA
TCGCTAAGATCTGTCTTTACAAAAATAGCTTAattcacgcatcacgcctc
aaattttttgCCCTATGAAATAATTATGCCAAAATTTTGATCACTCCGTC
AtgccaaaaaaaatcgaatcatGCCATCACACAATAAACAGTCCAAATCA
CGCCATCGTAAGTACAACCTTGTCTCGgtaacttttttaataagaaagtA
CCGCACCTTTGGAAAATGGACCGCTCCTAAACCTTTTTCTCCGATGTATG
AAAAGACCttaaatttgaacattttgaacATTGAAAGCCACCAGCAAAAC
ATTTAGGAAAAAATTGTGGAAAAGAAAGTCGTTAGATCTTGTGGAGATTG
ATAAGATGGCTGAAACGGTGGTTCTCCATATAATTGAATGTTCACTTCAC
TATGTAAAGTATtctgatatttactttttgcttttagTTGAATCGTTGAA
AAATGGAGTATTTGATTCTGTTCCATTCCCTCGCTCCTTCATGGAATTTC
TGAATGATGAAAGAATCACCAAAAGCCTTGAATCCATCGGTGATTACTGC
AAAGAAAAACATCGTGAAGTTACCGAACGAATTAGCCAAGAGTTATCCGA
AAAACCTTTCCTTGCATCATCAGTGAACAACAAACTTCATCCTAACCTAG
CATCTCAGCAACATTTTTACTCCAATAATGTATTACCGAGCATCCAGTCT
ATCCTTCAATTCCGTAACCAtcaacaacatcaacaacagAATCACCAGAA
ACAGCAACCACCATATCCAACAGCTAATTTTGCAAATGCTGCTTTCGGTC
ATCTTCTCAAAGGATTTGAAGCAATTCAACCAGCACCTCATTTCCAGCCA
AACCATCTTCTTAACCATCAAATTGCTAATCTGAATCAATCCTTTGAAGA
TAAACAGCCTTTAGACCGCAATTATCCTTGCAAAATCTGCAGCAAGACAT
TCAAGAGGTCGTCCACATTATCAACCCACATGATGATTCATGCTAACATC
CGACCCTTTGCTTGCACCTTCTGTGGCAAAAGATTTCACCAGAAATCTGA
TATGCGTAAACATACTTACACCCATACAGGGGAAAAGCCTCATCAATGTA
ATTTCTGTGGAAAATCATTCAGCCAGTCGTCAAACCTGATAACACATTGC
CGCAAACATAAAGGATTTAAACCATTCAGATGTAGCATCTGTTTGGAAGA
TTTTCAACAGAAAATTGATCTACGTAAACATATGTatacacatcaaaaca
aagattcgATAAGGCTGTAA Coding sequence (CDS) from alignment at sc0000204_pilon:95183..99002+ >XLOC_039994 ID=XLOC_039994|Name=XLOC_039994|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2214bp|location=Sequence derived from alignment at sc0000204_pilon:95183..99002+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCgaaatcatttttattgaaaCGGACAGCCAATTTGAATCAAGATGA
GTTGGTCCAACCACAAGGAGATGCTTTAGCACTTGTAAAAAATGAACAGc
gtgaaaacgaaagcgaaagtgatgatgatgaagaaaacCAATGGAGGATC
GATGCCgaaatcatttttattgaaaCGGACAGCCAATTTGAATCAAGATG
AGTTGGTCCAACCACAAGGAGATGCTTTAGCACTTGTAAAAAATGAACAG
cgtgaaaacgaaagcgaaagtgatgatgatgaagaaaacCAATGGAGGAT
CGaaacgGATAGCAAAGTAGATGTTTGCTCATTGGGCGAAGATGGCGAAG
ATGATCGGTCGAGTTTCAGCAGTGAATGTCCAAGCAACACAAGTGAAAAG
GAAAATCATCGTATGGCCACTGAAgaaacgGATAGCAAAGTAGATGTTTG
CTCATTGGGCGAAGATGGCGAAGATGATCGGTCGAGTTTCAGCAGTGAAT
GTCCAAGCAACACAAGTGAAAAGGAAAATCATCGTATGGCCACTGAAgTT
GAATCGTTGAAAAATGGAGTATTTGATTCTGTTCCATTCCCTCGCTCCTT
CATGGAATTTCTGAATGATGAAAGAATCACCAAAAGCCTTGAATCCATCG
GTGATTACTGCAAAGAAAAACATCGTGAAGTTACCGAACGAATTAGCCAA
GAGTTATCCGAAAAACCTTTCCTTGCATCATCAGTGAACAACAAACTTCA
TCCTAACCTAGCATCTCAGCAACATTTTTACTCCAATAATGTATTACCGA
GCATCCAGTCTATCCTTCAATTCCGTAACCAtcaacaacatcaacaacag
AATCACCAGAAACAGCAACCACCATATCCAACAGCTAATTTTGCAAATGC
TGCTTTCGGTCATCTTCTCAAAGGATTTGAAGCAATTCAACCAGCACCTC
ATTTCCAGCCAAACCATCTTCTTAACCATCAAATTGCTAATCTGAATCAA
TCCTTTGAAGATAAACAGCCTTTAGACCGCAATTATCCTTGCAAAATCTG
CAGCAAGACATTCAAGAGGTCGTCCACATTATCAACCCACATGATGATTC
ATGCTAACATCCGACCCTTTGCTTGCACCTTCTGTGGCAAAAGATTTCAC
CAGAAATCTGATATGCGTAAACATACTTACACCCATACAGGGGAAAAGCC
TCATCAATGTAATTTCTGTGGAAAATCATTCAGCCAGTCGTCAAACCTGA
TAACACATTGCCGCAAACATAAAGGATTTAAACCATTCAGATGTAGCATC
TGTTTGGAAGATTTTCAACAGAAAATTGATCTACGTAAACATATGTatac
acatcaaaacaaagattcgATAAGGCTGTAATTGAATCGTTGAAAAATGG
AGTATTTGATTCTGTTCCATTCCCTCGCTCCTTCATGGAATTTCTGAATG
ATGAAAGAATCACCAAAAGCCTTGAATCCATCGGTGATTACTGCAAAGAA
AAACATCGTGAAGTTACCGAACGAATTAGCCAAGAGTTATCCGAAAAACC
TTTCCTTGCATCATCAGTGAACAACAAACTTCATCCTAACCTAGCATCTC
AGCAACATTTTTACTCCAATAATGTATTACCGAGCATCCAGTCTATCCTT
CAATTCCGTAACCAtcaacaacatcaacaacagAATCACCAGAAACAGCA
ACCACCATATCCAACAGCTAATTTTGCAAATGCTGCTTTCGGTCATCTTC
TCAAAGGATTTGAAGCAATTCAACCAGCACCTCATTTCCAGCCAAACCAT
CTTCTTAACCATCAAATTGCTAATCTGAATCAATCCTTTGAAGATAAACA
GCCTTTAGACCGCAATTATCCTTGCAAAATCTGCAGCAAGACATTCAAGA
GGTCGTCCACATTATCAACCCACATGATGATTCATGCTAACATCCGACCC
TTTGCTTGCACCTTCTGTGGCAAAAGATTTCACCAGAAATCTGATATGCG
TAAACATACTTACACCCATACAGGGGAAAAGCCTCATCAATGTAATTTCT
GTGGAAAATCATTCAGCCAGTCGTCAAACCTGATAACACATTGCCGCAAA
CATAAAGGATTTAAACCATTCAGATGTAGCATCTGTTTGGAAGATTTTCA
ACAGAAAATTGATCTACGTAAACATATGTatacacatcaaaacaaagatt
cgATAAGGCTGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000204_pilon | genome | sc0000204_pilon:95183..99002 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 277-1107:2990 |
| Aaloc | 154-273:2362 |
| Aaloc | 1-150:1 |
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