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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000086_pilon:216147..220129- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_039286 ID=XLOC_039286|Name=XLOC_039286|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3983bp|location=Sequence derived from alignment at sc0000086_pilon:216147..220129- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAATATTTGAAGCTTCAATTTGCAAAGTTGGATTTTCAAAACCCTAA
GCATTTAGCTTTAGTGGCATCTGGGAGTATCACGCTTGGATATGTTCTTT
ACAAAACAATACAAACTTTTCAATCACAAAGTTTCAAGCAAACAAAAATT
AGAGGTATGTTCATGATGCTTTTGTCAATGACTTAATGATTTCAAAAATT
TCAATTTCCATTGTTGTTGACCACTGACCTTTATATATCCCTTGACCAAG
CAATATCCGCTATCTTTGATTGGAGTTTTTTTGGAATTGGTACCCGAGAA
GAAGCCATTGCAATGTTAAAAGTTAACGTCTGACGCCGCTACATCATCAA
AAGAATTCGAGTAAAAGTAGACCTAGTGCTCTCGATGCATTTACACCGCT
ATCAAGTAGTGCCGCCATTAGGGTACCACTTTTCAAAAAACTCCGATCAA
AGATTTTTCTTGGCTGGGATTGAGAAGCTTGGTCCAGGGTATATAAAGGT
CAGTGTTGTTGACCCCTTTTTGTGGTAACTTTAACTCGTCAAATGATTAA
TTTGATATTTGATGATGCTATGATTTATTTATCACATTTTACAGCTCTTT
TTGTTTGTATCGAAAGAGATTCCAGACTTCCAAGATTCCAAGACTGTATT
TATTTTCTCATATTCTAAGCATTATGTGATATTTTATTATTTGCAGCAAA
CCTGATTGAGCTTTTACAAGCTTTTAATGAAGATAATATTGAAAAAGAAG
ACCTGATTATAACTTTGAAAACGCTGTGTGATCAATCAGCATTCACTGAA
ATTCAGGTACTTATTAAACGTTTTGCCCAATCAAAGCTGTGGAATATTTG
TGTATGCATATATTTAAGGAACAAATTGGGAAAAATTTGGAAAATATTTT
GCTCTAAACAGCCTTATGAAATGTCAGTCTTACTTAAGTTTACATAAGAC
GTGTTTTTAAAATTATAAATTTTATCAAAGGATTTATATTTTGTTGCTTT
GTTTTTTGGCATTACCATATAAGTTATTTTTTCTGATCAGAGCACTCAAA
ATCTTGTCTTTGGGCTGCAAGTAGCCAGAAGAAGCAGCATCATGGTGAAA
CCTCATCCTTCATATGTTTCAGGAGAAGATTCGTAGCCTTGGATACTTAC
CCAAGATTATTCAAGTCATCAAGTACCCTGATTTGGATGTCCAATGCCAA
GTTGCTTTGTTGATTAATAACTTGGCAATGAATGTTCAAAATCAAACTGT
ACTAAAGGTTTGCTTTGATATTTATTCTTTTCCATTTGTAACATTTATTA
ATTTAAAGATGTTTTTGTTCCCCTGTCGATCATCGTCTAGTTGTCTCTTT
TCTTTCGTTTTTACTCGGTGGTATGGTATCATATATTCATTTCATGGTGA
AAATGAATCATTTGTATTTGTGACTAATGATCTATAATCAGTGAACATCA
TTCCTCCGACCAATGTAAAATCGTTGGAGTTCAGCATAATCTGTTACATT
TCTAATTCATTGAACTTTACTCAATCTACCCTATGCTGTATATGCAAGAG
AATTCTGCATATTAGAAGAATGGGTTTTTAAATTCCCAGCTAGATAGACC
TTTTCATAAATTTCGTCACGAACATCACTTGCCTCGTATTCAAACAATTA
TCATGGTGATTATGTCTTTTTAGACATTAAAATGATTTTTTATGAATAGG
AAGCAGTTTTAATAAAATCCTCTGGGAGTTAATCACCATGGCGATCATTT
CAAAACGAAGCAAGTGATGTTCGTAACGTAATTTATAAAAACGTCTATTG
ATGTTCATATTTTTGCTTTCTTTCTTCAGGACAGTATACCGCAACTTATT
CAAATTTTATGCAAAAATGTCATCAAAGATGAAACTATTAAACTTTTCAC
TGCTGTGTTGTGTGCTTTGACCAATCTGACTGCATTGGACGAAAGTCATT
CGACATTGCTCCCAAAAATGATTGTTTTTTGTGAGTTACTGACGCAATGT
GAAATTGTTCAAGTGAAGGTGAATTTTGTGTTTTATTAAATTTGTTTTTT
CAGGTATCTAATGCAAAAAAGATTCTTAAAAGGGTCTTAAAAATAAAAAG
CAAAATTTTCACAATCTAAGAGAGGGTTTGAATAAGTGTCAAAACTTCTT
CCGTATCAGACGGATTTCCGTCGCAGCGAAGTTTTTAGAGAGGTCTTCCG
TCTCAAAATTCTGCATAATTTACCAAATTATGTGTTAAATCCATTTTTCC
TCCCAGACAAAAGAATCTTGCTCTTGATCTCTTTTAAAAAAAACTAATTA
TTGGGTTAATTAAAAGCTTTTTAGGAACCTGAACAGACCTGAAAATAGCC
TGGAATTACCTGCAAATAATTCAAGTAACCATCCCATATGACACTACTTC
GTAAAATTTTTCCTGCTGAATTAATTCTTTATTACTCTTCGTAGCTTCAA
GTCTTGAAAATCTTTGTTAACATCTCCACGAACAAGCGAAATTGTGAAAA
TGATTTCGAATTGGCAGCAATGGTATGTATAATTTGTATAGTAGAGAAAT
GGAAGAGAGGCTGATAGAATAAACTTTTAACTTGCCCGACTCCCTAATTG
ATTCAGTACTAAACTTTTTTTATAAGAACGTCCAAAATTTTCATAGCCTT
CAGATTTTCTTAATTTTAATTAATCCTGAAAATGTTTTTGACTTGTTCTA
AACTTGTTCTAAATATTTTGGCCACCAAAGCTATTTGTTCTCAAAATAAA
ATCGGCTGTGTTGTGTACCATACTTTCTGGAAAAGCCTATGCCAGTGGTT
TCTAAAACATTTGCCTTGTATAAAAATACTCGAAGTTGAAAAATTTTTTA
ATGAAACTGGAAACTGAAAAATATGTAGCCGGAACAATATTGGAGTTTGC
ACTGCGCTTATATACTAATGGGTGCCTTCGATGAGGATTCTTTGTGAAAA
CTATTCATTATTTTTTAGATGATTCGATCAGTTGAATGCTTTCTTACAAT
CGGCGAAGAAGAACGATATTTACTTCGTGCAGTGTGTTGTTGTGCAAATG
TTTTAGAAGCTATTCATTCAAGATGGAAACATGATACTTTACCTCACATC
TCACCATCCGAAGTAACCACATATATCATTTATTTACATACTAACTGCTA
ACGGATTTTCCGGGAAAGTGTATCAAGTTTTAAAGTCGACTAGTCCGGGA
TGTTGTTTTCTATTTTACCTTGGTAAGATTTTCGAACGTTTGAATTTCAA
AACATTCGAAACACGCTGTTGACGAACAGAATTGAAAACAAGATGGGGAA
TAGTTAGCTCTAAAACTCGAAACACTTTCTTTTTTATATGGGAAGCCCGA
TCCGGTCAAGGAGCTAGATTCGTTGAAGTAACACACCTTCGCCGCATCAA
CTATGCACTGAAAAATGTTTGAAAATCTCCTTGCTTTCCTGGAGATTGCT
TGTTAACATGGAAAATGAAACTACTTATTTCCCATCCAGAACGCCTGTGC
GTAGTTTTTACACAAACGCCGGATTGAAACTAAAATCTATCGCTAGATTT
CAAAAAATGTAGTCCTCTAAAACAAAGCAACCGTTAGATACAATCCGTCG
TCATTATTACGGCGCGTTCTATGCGCGTTTTGGATGGAAAATCAGTGGCT
TCAACTTCTCTTGCCTGAGAAGGGTTAAAGTTTCGCCTCTAGCCCTTCGG
GGTTGAAACTCAATGGTATGGATCATAATCTTCCCACTTTGAACGTTTTT
TCTTTTAGTTTGTCAACCAAAAACTTCACGATAACCTGATCAAGCTCTCT
ACTCATCCGAACGAGGACATCCATAATCATGCGATGCGTGCGCTACGTGC
CCTACGTCCACCACCTATCGCTACTTCTTCTCCACACCAAGAATACGTAG
TGGATAAGGAAGGATCGAATAACAATGGCAGTTTGATGGGTGCTGTTGAT
AATCTTGATTTGCTGGACGTCCTAAAAATCTGA Coding sequence (CDS) from alignment at sc0000086_pilon:216147..220129- >XLOC_039286 ID=XLOC_039286|Name=XLOC_039286|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2070bp|location=Sequence derived from alignment at sc0000086_pilon:216147..220129- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAATATTTGAAGCTTCAATTTGCAAAGTTGGATTTTCAAAACCCTAA
GCATTTAGCTTTAGTGGCATCTGGGAGTATCACGCTTGGATATGTTCTTT
ACAAAACAATACAAACTTTTCAATCACAAAGTTTCAAGCAAACAAAAATT
AGAGATGGAATATTTGAAGCTTCAATTTGCAAAGTTGGATTTTCAAAACC
CTAAGCATTTAGCTTTAGTGGCATCTGGGAGTATCACGCTTGGATATGTT
CTTTACAAAACAATACAAACTTTTCAATCACAAAGTTTCAAGCAAACAAA
AATTAGAGCAAACCTGATTGAGCTTTTACAAGCTTTTAATGAAGATAATA
TTGAAAAAGAAGACCTGATTATAACTTTGAAAACGCTGTGTGATCAATCA
GCATTCACTGAAATTCAGCAAACCTGATTGAGCTTTTACAAGCTTTTAAT
GAAGATAATATTGAAAAAGAAGACCTGATTATAACTTTGAAAACGCTGTG
TGATCAATCAGCATTCACTGAAATTCAGGAGAAGATTCGTAGCCTTGGAT
ACTTACCCAAGATTATTCAAGTCATCAAGTACCCTGATTTGGATGTCCAA
TGCCAAGTTGCTTTGTTGATTAATAACTTGGCAATGAATGTTCAAAATCA
AACTGTACTAAAGGAGAAGATTCGTAGCCTTGGATACTTACCCAAGATTA
TTCAAGTCATCAAGTACCCTGATTTGGATGTCCAATGCCAAGTTGCTTTG
TTGATTAATAACTTGGCAATGAATGTTCAAAATCAAACTGTACTAAAGGA
CAGTATACCGCAACTTATTCAAATTTTATGCAAAAATGTCATCAAAGATG
AAACTATTAAACTTTTCACTGCTGTGTTGTGTGCTTTGACCAATCTGACT
GCATTGGACGAAAGTCATTCGACATTGCTCCCAAAAATGATTGTTTTTTG
TGAGTTACTGACGCAATGTGAAATTGTTCAAGTGAAGGACAGTATACCGC
AACTTATTCAAATTTTATGCAAAAATGTCATCAAAGATGAAACTATTAAA
CTTTTCACTGCTGTGTTGTGTGCTTTGACCAATCTGACTGCATTGGACGA
AAGTCATTCGACATTGCTCCCAAAAATGATTGTTTTTTGTGAGTTACTGA
CGCAATGTGAAATTGTTCAAGTGAAGCTTCAAGTCTTGAAAATCTTTGTT
AACATCTCCACGAACAAGCGAAATTGTGAAAATGATTTCGAATTGGCAGC
AATGCTTCAAGTCTTGAAAATCTTTGTTAACATCTCCACGAACAAGCGAA
ATTGTGAAAATGATTTCGAATTGGCAGCAATGATGATTCGATCAGTTGAA
TGCTTTCTTACAATCGGCGAAGAAGAACGATATTTACTTCGTGCAGTGTG
TTGTTGTGCAAATGTTTTAGAAGCTATTCATTCAAGATGGAAACATGATA
CTTTACCTCACATCTCACCATCCGAAATGATTCGATCAGTTGAATGCTTT
CTTACAATCGGCGAAGAAGAACGATATTTACTTCGTGCAGTGTGTTGTTG
TGCAAATGTTTTAGAAGCTATTCATTCAAGATGGAAACATGATACTTTAC
CTCACATCTCACCATCCGAATTTGTCAACCAAAAACTTCACGATAACCTG
ATCAAGCTCTCTACTCATCCGAACGAGGACATCCATAATCATGCGATGCG
TGCGCTACGTGCCCTACGTCCACCACCTATCGCTACTTCTTCTCCACACC
AAGAATACGTAGTGGATAAGGAAGGATCGAATAACAATGGCAGTTTGATG
GGTGCTGTTGATAATCTTGATTTGCTGGACGTCCTAAAAATCTGATTTGT
CAACCAAAAACTTCACGATAACCTGATCAAGCTCTCTACTCATCCGAACG
AGGACATCCATAATCATGCGATGCGTGCGCTACGTGCCCTACGTCCACCA
CCTATCGCTACTTCTTCTCCACACCAAGAATACGTAGTGGATAAGGAAGG
ATCGAATAACAATGGCAGTTTGATGGGTGCTGTTGATAATCTTGATTTGC
TGGACGTCCTAAAAATCTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086_pilon | genome | sc0000086_pilon:216147..220129 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 811-1035:226 |
| Aaloc | 667-810:1016 |
| Aaloc | 589-666:1540 |
| Aaloc | 400-588:2155 |
| Aaloc | 265-399:2862 |
| Aaloc | 157-264:3286 |
| Aaloc | 1-153:3984 |
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