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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000117_pilon:296910..302186+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038816 ID=XLOC_038816|Name=XLOC_038816|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5277bp|location=Sequence derived from alignment at sc0000117_pilon:296910..302186+ (Clytia hemisphaerica_ch_hm2_pilon)
atggTATTACTCAAAATCCTGAAACCAATTCAAACACCACTGTTATGGCG
TAATTTACAAATACAAAATGGTACTTTAGCTGTGGTGACAACCTGCTTGT
TATGTCAACAGCAGAAACGTTATGCAGGCCATTCGAAATGGGCCAAcatc
aaattcaagaaaatgcacaaaGATAATGCAAGGGCCAAAGTTTTCGGACA
ATTATCACGTGAGATCATACAAGCTGTTAAAGGTAAGGTAGTAAATATTC
TTCATTTGACGAAAACTAGGCAAATAGTACTGGGTACTTGGTGCTGGTTT
CGAGTAACGATATGAGGTAGAATCTGGTCATTTTGTGTCtcgttttaaga
aaacttttacttgTTTCGAGTAACGATATGAAGTAGAAGCTGGTCATTTT
GTGTCTCTTTTTAAGAAACTTTTACTTGTTTCGAGTAACGATATGAAGTA
GAATCTGGTCATTTTGTGtctcTttttaagaaaatttttacttgtTTCGA
GTAACGATATGAAGTAGAATCTGGTCATTTTGTGtctctttttaagaaaa
cttttacttgTTTCGAGTAACGATATGAAGTAGAATCTGGTCATTTTGTG
TCtcgttttaagaaaactttttactTGTTTCGAGTAACGATATGAAGTAG
AATCTGGTCATTTGTGTCTCGTTTAagaaacttttacttttttaagaaaa
ttttacttgttTCGAGTAACGATATGAGATAGAATCTGGTCATTTTGTGT
CtcgttttaagaaaacttttacttgTTTCGAGTAACGATATGAAGTAGAA
TCTGGTCATTTTGTGtctctttttaagaaaacttttacttgTTTCGAGTA
ACGATATGAAGTAGAATCTGGTCATTTTGTGtctctttttaagaaaattt
ttacttgtTTCGAGTAACGATTTGAGATAGAATCTGGTCATTTTGTGTCt
cgttttaagaaaacttttacttgTTTCGAGTAACGATATGAAGTAAAATC
TGGTCATTTTGTGTCtcattttaagaaaacttttacttgTTTCGAGTAAC
GATATGAAGTAGAATCTGGTCATTTTGTGTCtcgttttaagaaaactttt
acttgTTTCGAGTAACGATATGAAGTAAAATCTTCTCATTTTGTGTCTCg
tttaagaaaacttttacttgTTTCGAGTAACGATTTGAGATAGAATCTGG
TCATTTTGTGTCtcgttttaagaaaatttttacttgtTTCGAGTAACGAT
ATGAAGTaaaatcttgtcattttgtGTCtcgttttaagaaaatttttact
tgtTTCGAGTAACGATATGAAGTAGAATCTGGCCATTTTGTGTCtcgttt
taagaaaacttttacttgTTTCGAGTAACGATATGAAGTAAAATCTTCTC
ATTTTGTGTCtcgttttaagaaaacttttacttgTTTCGAGTAACGATTT
GAGATAGAATCTGGTCATTTTGTGTCtcgttttaagaaaatttttacttg
tCTCGAGTAACGATATGAAGTAAAATCTGGCCATTTTGTGTCtcgtttta
agaaaacttttacttgTTTCGAGTAACGATTTGAGATAGAATCTGGTCAT
TTTGTGTCtcgttttaagaaaatttttacttgtCTCGAGTAACGATATGA
AGTAAAATCTGGTCATTTTGTGTCTCTTTTTAAGAAACTTTTACTTGTTT
CGAGTAACGATATGAAGTAGAATCTGGTCATTTTGTGtctctttttaaga
aaacttttacttgTTTCGAGTAACGTGTCTCATTTTgtgtttttaagaaa
acttttacttgTTTCGAGTAACGATTTGAGATAGAATCTTGTCATTTTGT
GTCtcgttttaagaaaatttttacttgtTTCGAGTAACGATATGAAGTAG
AATCTGGTCATTTTGTGTCtcgttttaagaaaatttttacttgtCTCGAG
TAACGATATGAAGTAGAATCTGGTCATTTTGTGtctctttttaagaaaac
ttttactAGTTTCAAAGCTCTATCAAAGCTCTCAtaaattttatcttttg
ttGTAGAATGGGCCGTAAATTGTTCTCTAAAAGATTTCACACTCTTGAAA
CTTCGTACTCAATATTCCTTTCTTGTGAGTTATCTCTGTTAACCATAATC
ATTTTTCGACAAATCTGATCCGAAAAGTTCCATCTGTTTTGAGCTTGTCC
AGAGGTTGTATTTAGCAGAGAACACCAAATCGAAGTGATATAACAAAACA
CGATATGTTCTCCAAATTTTCGGGCAGTgaagttaaattttattttgttt
tcaatatttaCAGAGAAAGGTGCTGATCCAGTTTACAATGCGAAGTTAGA
GGGTCTGGTGTTGAAAGCAAGATCCTCAAGCATGCCAAAAGAACGCATcg
aaaattcaatcaaaaatgcTTTAAGGGTAATATATCTTTTCATGGTTTGT
CAGGAGAATCTTCAAGGTTTTATCGAGATCCTCTATCTCGAGTTCGAAAG
GGACCGAAAATTGGTTCGAACTTTCGAGATATAGAGAGGAATTTAACCTA
TAACAATGTTTAAGCAACTGGCCTTCTTCAATTAAGATATTCCACTCGAA
ATTACATCTCCATCTTTCCCAGAGCTCTGACGAGAAAGCCACGCAATCGC
TATTTCAAGCAAGGGGACCCATGAAATGTGGTCTTATGATCGACGTCTTG
GCGCCAAATGTCATTCGAAcgaaaaacgaaatcaaaacaatccTAAAGAA
GAACGAGTAGGTATCCGTTTTCTTGAACAGGGAGTGGTCAAGCACGTGAT
TGCTACCGTAGTTGTAAACAAAATCAGCCGACTGCacgaaaatatgtttt
tttgtttaaagtaCACGACACCAACTCTCAATTTGACACCACGCATCGAT
TACAATTATGTGCCGtatcaaaataaaagactttgcgtagaaattaaaaa
ttgtaaCAAATCTACAGCCTTGTGAATTACTTGCGTGTATTGTATTTGAC
CTATAATGTGTAGACAGGGAAAGTTGCCTTTTTTATGATTACTAAACCAC
CTGTACCCATAAGATggcagaaaaagattttctgacACCGCCTCCAACAA
GCATCAGTAATACCAAAATACCCAACCAATCGTTCcctctttattttatt
tcagtGCGACATTCATTTCTGACGGGTCTGTTGCCTTCATGTTCGATCAC
AAAGGTACGATTAATTATCAATATTCCTAATTCACCATCTGTTTTAATTT
GACCTGATCTCTACAAtctctattgtttaaaaatataacAACGAGATTGG
ATTCATCCTTAAAATGTCGTCAAAACTGTTTTCGGTTTCTATCTATGACA
GTATGGATATTTTTCGTTTCGGAGAAGTACTCACTCGAAATCGTAATATT
TTAgctttggaaaaagaaaaataagtttgGGCTTTTCTGTAGGTTCTGTC
TTCTTAGCGTTCCGGACGGATAATTTTTATCGGATCGCAAAAAGTTGcct
aatttatttcatttatttcatcCTAAAACACGACTGACCGGTTATCATCC
GTTAGAGTCAGGGTTGGAGCTTGAGATTATTTCGGTATTTAGTCCTTTTG
AATTGCGGAATGTGTTGAGCTACGACGGTATCAAAACTTAAAAGATTtta
gaaaatgagaaataaagtCTCAGACAGGCATAAAGCCGACCATGCTGCCG
TTAAAAATTATGCTGAAAAACCTTAAATTTGCCTGGGAAGAGTTTAAAGC
GGGCTACACAGCGATGACATCATTTgtctaatttttcattttcgacgtca
gaagttttgttcacttgtcgcttgttttttcgctattttttgcgtttttt
ttaaGTGGCTGGCTCCGAAAAACCCTTGAGCTTTTGGACAGTTCaagaat
tgtttccacaaaGAGCCActaaaatcaatcgaagcttaaggaaacggtta
acaaacaCAATAATGACCGTTTCTTTCGGCTTGTACCGAGAAATATTGCT
CTCGTTCaggtacagccctcactaaccggtcatcaTTGTATTAATTAGTA
ATGGTTTTGGCTCATATACAAAATATATGATTGTTTTTGATTCACGAATC
GTTTCACTAATGAGATTAAGACCCCGGTTATCTTTCTCCAACGCCTAAGA
CATTGTGATTGTTTTATTTGCAGGTGTAGTGACGATCAAAGATAAATTGT
CCAAACCTAAGGACGGTCGTGATGACGTTGAAGTGGTGACTGATGAAAAT
GCTATCGATCAAGTATATTGAATTTGATAGTGTACCTTTATTAAATTTTA
CAGTTGAGAGCCTTCGACTTGAAACACGattgttgaaagttttttttcaa
ataagctATTAAAGAAAGGGATTAGTGGTTCAAATCTGTCCTCTATGGAT
AAATGAAAGATGCATCGATACATCGATTTAAGTTCATTCATTGGCTTAAA
GTGTCTTCCAGATTTTTGTGGAGTTGCTTTCACATAGGtgcaaaaaagag
tgcacacttaaaatgaattgaatttctttctttcgtACAGGCGGAAGAGA
TAGCGATCGAAGTAGGTGCAGAAGACGTCCATTTTACGTACAATGAACAG
CTTGATCAACGAGTCATTCAGGTATGAATTCTGCATCCTCTCTACAATAC
ATATTTAATCTCATTGATTGGACAAACCACTGAGCATTGTTTCAGCTCAT
TTGAAATTGAGTGTTTAGTTGAAGTCATTAAATAAACGgaaagcgaccgt
agtgcagtggtagagcatccgactATAGTGCGCCAGGTTGTGGGTTCCTA
CCCCCAgccaggtcataccaaagattcccaaaatggtacttgctGCCTCT
CTGCTTGAAACTCGGCacttaagagaaggatcaagggtaagtggaaagAG
TGGCCCTATCTTCGGAtagatagctatcaaaagagcCTTCTGATCGCATC
CGACTGCGGTaacagacttacttactacaaGCGGAAAGCAAAAGATGGAA
TCTCATCGACTTCTTTCATCTCTCATAGTTCTTATGTCAACCATTGGAGA
TTCAAACCATTCGTAAGGAGATGGAAGAAAATCACCAGCCACTTGAAATC
TTATCAACTGATGTCCAATATCTCGCCAAATCATTGGTTGATCTTGATGA
ACACAATATGACTCAAGCAGATCGATTGATTGAACTGTTAACCAATCACC
CTGATGTTCTCAATGTTTATGATAATATAATTGGGTATCCGAGCTCTACT
AtcaaaattgaccaaattttcaCCTAG Coding sequence (CDS) from alignment at sc0000117_pilon:296910..302186+ >XLOC_038816 ID=XLOC_038816|Name=XLOC_038816|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1896bp|location=Sequence derived from alignment at sc0000117_pilon:296910..302186+ (Clytia hemisphaerica_ch_hm2_pilon)
atggTATTACTCAAAATCCTGAAACCAATTCAAACACCACTGTTATGGCG
TAATTTACAAATACAAAATGGTACTTTAGCTGTGGTGACAACCTGCTTGT
TATGTCAACAGCAGAAACGTTATGCAGGCCATTCGAAATGGGCCAAcatc
aaattcaagaaaatgcacaaaGATAATGCAAGGGCCAAAGTTTTCGGACA
ATTATCACGTGAGATCATACAAGCTGTTAAAGatggTATTACTCAAAATC
CTGAAACCAATTCAAACACCACTGTTATGGCGTAATTTACAAATACAAAA
TGGTACTTTAGCTGTGGTGACAACCTGCTTGTTATGTCAACAGCAGAAAC
GTTATGCAGGCCATTCGAAATGGGCCAAcatcaaattcaagaaaatgcac
aaaGATAATGCAAGGGCCAAAGTTTTCGGACAATTATCACGTGAGATCAT
ACAAGCTGTTAAAGAGAAAGGTGCTGATCCAGTTTACAATGCGAAGTTAG
AGGGTCTGGTGTTGAAAGCAAGATCCTCAAGCATGCCAAAAGAACGCATc
gaaaattcaatcaaaaatgcTTTAAGGAGAAAGGTGCTGATCCAGTTTAC
AATGCGAAGTTAGAGGGTCTGGTGTTGAAAGCAAGATCCTCAAGCATGCC
AAAAGAACGCATcgaaaattcaatcaaaaatgcTTTAAGGAGCTCTGACG
AGAAAGCCACGCAATCGCTATTTCAAGCAAGGGGACCCATGAAATGTGGT
CTTATGATCGACGTCTTGGCGCCAAATGTCATTCGAAcgaaaaacgaaat
caaaacaatccTAAAGAAGAACGAAGCTCTGACGAGAAAGCCACGCAATC
GCTATTTCAAGCAAGGGGACCCATGAAATGTGGTCTTATGATCGACGTCT
TGGCGCCAAATGTCATTCGAAcgaaaaacgaaatcaaaacaatccTAAAG
AAGAACGAtGCGACATTCATTTCTGACGGGTCTGTTGCCTTCATGTTCGA
TCACAAAGtGCGACATTCATTTCTGACGGGTCTGTTGCCTTCATGTTCGA
TCACAAAGGTGTAGTGACGATCAAAGATAAATTGTCCAAACCTAAGGACG
GTCGTGATGACGTTGAAGTGGTGACTGATGAAAATGCTATCGATCAAGTG
TAGTGACGATCAAAGATAAATTGTCCAAACCTAAGGACGGTCGTGATGAC
GTTGAAGTGGTGACTGATGAAAATGCTATCGATCAAGCGGAAGAGATAGC
GATCGAAGTAGGTGCAGAAGACGTCCATTTTACGTACAATGAACAGCTTG
ATCAACGAGTCATTCAGGCGGAAGAGATAGCGATCGAAGTAGGTGCAGAA
GACGTCCATTTTACGTACAATGAACAGCTTGATCAACGAGTCATTCAGTT
CTTATGTCAACCATTGGAGATTCAAACCATTCGTAAGGAGATGGAAGAAA
ATCACCAGCCACTTGAAATCTTATCAACTGATGTCCAATATCTCGCCAAA
TCATTGGTTGATCTTGATGAACACAATATGACTCAAGCAGATCGATTGAT
TGAACTGTTAACCAATCACCCTGATGTTCTCAATGTTTATGATAATATAA
TTGGGTATCCGAGCTCTACTAtcaaaattgaccaaattttcaCCTAGTTC
TTATGTCAACCATTGGAGATTCAAACCATTCGTAAGGAGATGGAAGAAAA
TCACCAGCCACTTGAAATCTTATCAACTGATGTCCAATATCTCGCCAAAT
CATTGGTTGATCTTGATGAACACAATATGACTCAAGCAGATCGATTGATT
GAACTGTTAACCAATCACCCTGATGTTCTCAATGTTTATGATAATATAAT
TGGGTATCCGAGCTCTACTAtcaaaattgaccaaattttcaCCTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117_pilon | genome | sc0000117_pilon:296910..302186 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 703-951:5029 |
| Aaloc | 622-702:4541 |
| Aaloc | 568-621:4209 |
| Aaloc | 532-564:4176 |
| Aaloc | 481-528:3156 |
| Aaloc | 346-477:2623 |
| Aaloc | 235-345:2316 |
| Aaloc | 1-231:1 |
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