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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000115_pilon:414244..416777+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038646 ID=XLOC_038646|Name=XLOC_038646|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2534bp|location=Sequence derived from alignment at sc0000115_pilon:414244..416777+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAATGTATACCAGACAGGTTATACTTTTGCTTATCAACATACATTTT
GGAGAACTACCAGGAGAAACCAGGCGATTTGGTGATTAATTTAGATGAGG
TCTATCAACACGCTAAAGTTCGAAAACATTTTGGGCCTCCCTCCTTGAAG
ATAGTTTGGAAACATTGTGATGAAATCGATTCAAAATTGAAGAAGTTCAA
ACGGATTATTTTCATTACCAATAACCTGTAAGTAAATATTACTATAAATG
CTGTTAAATACAAATAGTATTTTTCATGCACTTTTTTCTACCTAGGGGGC
TTGGCCATTACATATTGCCTCGTTCCACCCCCGATAGAGCACAGCGTGCT
TAATAAAGTAATCTTTCAACTTTGAATTTGGTGAATCTGGGAGTTCTTGT
GTTTAAAATCATACTGCAATTTTACGAAATATATCAACCTCAAAGTATAA
CCAGGACGGAAATCCCAGTTCTAATTCTTTATACTAGGCAGATCGAAACA
TTCTTCTTCTACACCAGTGACCATATTACTTCCAATTATAAGTTTTATTT
TGCACCGTTTAGTTTTTACAAGTCTTTCAAAACAACATGTAACCGGATCC
AATTGTTAAATAACCTTTGCTATTCTTTGTTACAGCAATGACAATCTTCA
TATCGAGCAGCGAACACTGTCCGCGTTCCTGATGGCCGCTTACGCCATTT
TGCGTTTAGAATGGAACGCTGAGAAAGTGAACACGACACTTCTGTCTGCC
ATTCCAGCACGTCTGGCGTTCTTCAGAGATTATCATGGTGAGAGCTCATA
TAAATTGAACATCATGGATTGTCTACAAGGTATTCATACAGGTAAGTCGA
TAAAAAGAATAGCAAAATGTATTGCAAATTCCAAAGAATCCAGGCATTTT
TGGTCCAATTTACAACCCAATAtgcaaaagtcaaaatatttaaaaccgTT
GAAACTTTGAATTTCGGTTGGCTGTTATTTCcttagaaaatgatttttta
actcATTGTCTCATTTGTAACTTCACTTTTCTGACCATAAGAATTTTTGC
AAGACCTAATTTGTGGGCCCCTCTCAGAAATCTCCAAATCCTCtctactt
tcgaaccaatcacagGCGGTTATGCCCCATCAATGACGCTACTGATTCTA
AGAATTGTTAAAGACCTGCTAAAAGTAAACATTGCATCTTGAATTTCTAG
GTTGTATCGTTAATCGTTGGTTCACCAATCTACatcaaacaaaatttcca
atCTCTACAAATTCACATCTTGATATGAATTGGATAATTCCTGGCATCTT
ATTGGCTTTCAAAGATCCAACATTGAATCGTACTAAAGAAACACGTAGTG
TCTCTAAAGCTTACATTAAAGAACTAAAACGATGTGGGATCAAGGTTATC
ATTAGGCTTAATAGCAGCGACCATACAGCCAATTATGAATATTACGGGAA
ATCATACCACCCTTCAGATTTCAAACGTGAACAATTCTACCATTATGATA
TCCCGTTTCGGGATGTTGGTACCCCGACCACCGCCCAAGCGCATCAATTC
GTCAGCTTATGCGAGCGTTACGGTTCAGGTATCGCGGTCCATTGTCACGC
AGGTCTTGGCCGTACGGCAACCATGATCGGATCTTATATGTTGAAACATT
TCAACTTCAATGCACGTGCTGTGTGTGGATGGCTTAAAGTTTGTCGCCGT
GGTTCTGTTATGGGTCCACAGCATTTCTTCCTTGACAAGTATCAAGCAGA
ACTGGAAAATATCAAACGGAACATGGTGGTTGAAGGAGAGAAACTAGGCT
GTGAAACACCGACAAAGCAAGTGTCTCAGCAACCGATCACTGCCGCAATT
AAAACTGAACTTACACGTTCTCCTCGAAAGAATAACATTATCCATATCGC
ACCGGTCAATCCTCGGCAGTTGATGATCCGCCCAgaacaaacaatgaaaa
aatacaaacttgacacaacaaatacacaaccagaaaaagcagaaaatATT
CGAAGTAAAGTTGtcgtttcaaaaacaaaaccaactTCAAGCGAGAAACA
AATCGTAGCCCCTTCACGACCGTATTCTACAAAGCCATGCCTCATTAAAT
CATCTAAGAGTATTTTGCATCCTAAACTGACCAAATCAAGAGAGTCAGCT
ACAGTGATTGCTGGTGCTAAATCATCAAAAACTCAAGTAACCAGAGAATT
AACCAAATCTGTTCGAAAGTCTGCACGCCATGACGGCCCGCCAGCGCCTC
GGTTACGTTACACAACAACACCAAATAGAAAATCACAGACCaagatcgaa
ccagtcaaatcTCAACTAAGCGAACTTGGAACCATGTTAAAAAAGTATCG
AAAGAATGGCTCTCAAGAAGCAATGGGCCGTAAACAGTCGAGTAAAACTG
TTATTCATCACGGTGGCAAGCGTGCAACACCACGGTGGCATAATAACATC
CCTTCGGACGGTTTCATGTCTCAAAATAAAGGTCGAATTTACGGCCTGAT
CAACACCGTctactcaaaacaaaataaaaactaa Coding sequence (CDS) from alignment at sc0000115_pilon:414244..416777+ >XLOC_038646 ID=XLOC_038646|Name=XLOC_038646|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3534bp|location=Sequence derived from alignment at sc0000115_pilon:414244..416777+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAATGTATACCAGACAGGTTATACTTTTGCTTATCAACATACATTTT
GGAGAACTACCAGGAGAAACCAGGCGATTTGGTGATTAATTTAGATGAGG
TCTATCAACACGCTAAAGTTCGAAAACATTTTGGGCCTCCCTCCTTGAAG
ATAGTTTGGAAACATTGTGATGAAATCGATTCAAAATTGAAGAAGTTCAA
ACGGATTATTTTCATTACCAATAACCTATGGAATGTATACCAGACAGGTT
ATACTTTTGCTTATCAACATACATTTTGGAGAACTACCAGGAGAAACCAG
GCGATTTGGTGATTAATTTAGATGAGGTCTATCAACACGCTAAAGTTCGA
AAACATTTTGGGCCTCCCTCCTTGAAGATAGTTTGGAAACATTGTGATGA
AATCGATTCAAAATTGAAGAAGTTCAAACGGATTATTTTCATTACCAATA
ACCTCAATGACAATCTTCATATCGAGCAGCGAACACTGTCCGCGTTCCTG
ATGGCCGCTTACGCCATTTTGCGTTTAGAATGGAACGCTGAGAAAGTGAA
CACGACACTTCTGTCTGCCATTCCAGCACGTCTGGCGTTCTTCAGAGATT
ATCATGGTGAGAGCTCATATAAATTGAACATCATGGATTGTCTACAAGGT
ATTCATACAGCAATGACAATCTTCATATCGAGCAGCGAACACTGTCCGCG
TTCCTGATGGCCGCTTACGCCATTTTGCGTTTAGAATGGAACGCTGAGAA
AGTGAACACGACACTTCTGTCTGCCATTCCAGCACGTCTGGCGTTCTTCA
GAGATTATCATGGTGAGAGCTCATATAAATTGAACATCATGGATTGTCTA
CAAGGTATTCATACAGGTTGTATCGTTAATCGTTGGTTCACCAATCTACa
tcaaacaaaatttccaatCTCTACAAATTCACATCTTGATATGAATTGGA
TAATTCCTGGCATCTTATTGGCTTTCAAAGATCCAACATTGAATCGTACT
AAAGAAACACGTAGTGTCTCTAAAGCTTACATTAAAGAACTAAAACGATG
TGGGATCAAGGTTATCATTAGGCTTAATAGCAGCGACCATACAGCCAATT
ATGAATATTACGGGAAATCATACCACCCTTCAGATTTCAAACGTGAACAA
TTCTACCATTATGATATCCCGTTTCGGGATGTTGGTACCCCGACCACCGC
CCAAGCGCATCAATTCGTCAGCTTATGCGAGCGTTACGGTTCAGGTATCG
CGGTCCATTGTCACGCAGGTCTTGGCCGTACGGCAACCATGATCGGATCT
TATATGTTGAAACATTTCAACTTCAATGCACGTGCTGTGTGTGGATGGCT
TAAAGTTTGTCGCCGTGGTTCTGTTATGGGTCCACAGCATTTCTTCCTTG
ACAAGTATCAAGCAGAACTGGAAAATATCAAACGGAACATGGTGGTTGAA
GGAGAGAAACTAGGCTGTGAAACACCGACAAAGCAAGTGTCTCAGCAACC
GATCACTGCCGCAATTAAAACTGAACTTACACGTTCTCCTCGAAAGAATA
ACATTATCCATATCGCACCGGTCAATCCTCGGCAGTTGATGATCCGCCCA
gaacaaacaatgaaaaaatacaaacttgacacaacaaatacacaaccaga
aaaagcagaaaatATTCGAAGTAAAGTTGtcgtttcaaaaacaaaaccaa
ctTCAAGCGAGAAACAAATCGTAGCCCCTTCACGACCGTATTCTACAAAG
CCATGCCTCATTAAATCATCTAAGAGTATTTTGCATCCTAAACTGACCAA
ATCAAGAGAGTCAGCTACAGTGATTGCTGGTGCTAAATCATCAAAAACTC
AAGTAACCAGAGAATTAACCAAATCTGTTCGAAAGTCTGCACGCCATGAC
GGCCCGCCAGCGCCTCGGTTACGTTACACAACAACACCAAATAGAAAATC
ACAGACCaagatcgaaccagtcaaatcTCAACTAAGCGAACTTGGAACCA
TGTTAAAAAAGTATCGAAAGAATGGCTCTCAAGAAGCAATGGGCCGTAAA
CAGTCGAGTAAAACTGTTATTCATCACGGTGGCAAGCGTGCAACACCACG
GTGGCATAATAACATCCCTTCGGACGGTTTCATGTCTCAAAATAAAGGTC
GAATTTACGGCCTGATCAACACCGTctactcaaaacaaaataaaaactaa
GTTGTATCGTTAATCGTTGGTTCACCAATCTACatcaaacaaaatttcca
atCTCTACAAATTCACATCTTGATATGAATTGGATAATTCCTGGCATCTT
ATTGGCTTTCAAAGATCCAACATTGAATCGTACTAAAGAAACACGTAGTG
TCTCTAAAGCTTACATTAAAGAACTAAAACGATGTGGGATCAAGGTTATC
ATTAGGCTTAATAGCAGCGACCATACAGCCAATTATGAATATTACGGGAA
ATCATACCACCCTTCAGATTTCAAACGTGAACAATTCTACCATTATGATA
TCCCGTTTCGGGATGTTGGTACCCCGACCACCGCCCAAGCGCATCAATTC
GTCAGCTTATGCGAGCGTTACGGTTCAGGTATCGCGGTCCATTGTCACGC
AGGTCTTGGCCGTACGGCAACCATGATCGGATCTTATATGTTGAAACATT
TCAACTTCAATGCACGTGCTGTGTGTGGATGGCTTAAAGTTTGTCGCCGT
GGTTCTGTTATGGGTCCACAGCATTTCTTCCTTGACAAGTATCAAGCAGA
ACTGGAAAATATCAAACGGAACATGGTGGTTGAAGGAGAGAAACTAGGCT
GTGAAACACCGACAAAGCAAGTGTCTCAGCAACCGATCACTGCCGCAATT
AAAACTGAACTTACACGTTCTCCTCGAAAGAATAACATTATCCATATCGC
ACCGGTCAATCCTCGGCAGTTGATGATCCGCCCAgaacaaacaatgaaaa
aatacaaacttgacacaacaaatacacaaccagaaaaagcagaaaatATT
CGAAGTAAAGTTGtcgtttcaaaaacaaaaccaactTCAAGCGAGAAACA
AATCGTAGCCCCTTCACGACCGTATTCTACAAAGCCATGCCTCATTAAAT
CATCTAAGAGTATTTTGCATCCTAAACTGACCAAATCAAGAGAGTCAGCT
ACAGTGATTGCTGGTGCTAAATCATCAAAAACTCAAGTAACCAGAGAATT
AACCAAATCTGTTCGAAAGTCTGCACGCCATGACGGCCCGCCAGCGCCTC
GGTTACGTTACACAACAACACCAAATAGAAAATCACAGACCaagatcgaa
ccagtcaaatcTCAACTAAGCGAACTTGGAACCATGTTAAAAAAGTATCG
AAAGAATGGCTCTCAAGAAGCAATGGGCCGTAAACAGTCGAGTAAAACTG
TTATTCATCACGGTGGCAAGCGTGCAACACCACGGTGGCATAATAACATC
CCTTCGGACGGTTTCATGTCTCAAAATAAAGGTCGAATTTACGGCCTGAT
CAACACCGTctactcaaaacaaaataaaaactaa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000115_pilon | genome | sc0000115_pilon:414244..416777 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 436-1767:1203 |
| Aaloc | 229-432:637 |
| Aaloc | 1-225:1 |
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