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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000143_pilon:570835..575225+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038214 ID=XLOC_038214|Name=XLOC_038214|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4391bp|location=Sequence derived from alignment at sc0000143_pilon:570835..575225+ (Clytia hemisphaerica_ch_hm2_pilon)
atggccgtcaaaaatttttcttgcaCTGTggtgttttttatctttttaac
cATAATTTCATCTTACTTTACTGTTAATGGAAATGAAATCAATCTTGGGA
ATCtagcagaaatattttcaaccttAGCTGGAGGAGAAGGTTGTGTATTT
CGGTGTCCAAAAGGTAGGTAGTGATTATATTTCATTGCTCATAtcatctt
cttttcttttgatttattgttttttgtcaacatttttgcttgtcattttc
ctgttttgttcacttttggtttgaaagcaaaattatttatttattgaatt
taactTGGGAATGCCAAATTTACAATAAATGAGCCAATTTGTGTAGGGTT
GTTATGATAAGCTATCTCATTTTGTACCGTACAGTAACCACGGCCGTGAA
GTCTGGTATAACTTttcttgcatcagtggagggaaacttgcatagccctc
aaatgaatgatctGACTGGACATTagaatacaaagttaaatcaaaacaaa
ccagatTTACAAAAAGTTTGCGGTCGGTAACCGTCAGATCTAACTGATGT
CATGCATAATATCATGTTTTTAATGTCATTATTAAAATTGAGGTTAcacg
gtgaaggcttcttcataaagacaaAAGActccatagacctttttttaaag
aggcaaccctgttgaataattatgtagtccagcataaaaacaatgatata
gccatgcataattactgtttcatgcatattataataattatgattggcta
tatcattgttttttttgctggactacataattattcaacagggtggcctc
atcaaaaaaaggtctatttttcggatccgttatgcgggaatagtgtcagc
acctgcaggcgacctggtaggaaTAGAaatagggttgggtatgggtgtgg
ttacgttatcagattggctaggaattgggttattatcagttagggttagg
gttggagttcgaaacaagcacttttttgagattttctcttaatacagtct
ggtctgcagtttgtacaatataaatagccgtcagaggcatgaatccgtgg
cgcagtggataaggcaatgggtttcaaaatatcggaactttgcatttagt
ggatgttcgaatcccaccggtggcgatttgtcggtaagtcattcagtaag
ttagaaaacatagaaaataactcataaagaaccagaaagtcagaaaaact
atgaacaagagactggaaagtacgaaataagtccagatctgtctttcgtc
tttgtgaagaagccacgaccagGTTACATGTCTAACAAGCAGCCATCGAG
AAACGTCTAGATTCCTgccatcttgaaatttatgaTCTCGCATGAATTTT
TACTATCCAACCACCCTTTTTCAGGCTAACTCTTTCTTAAGCTCTAAAAC
AGTATCTAATAACATAAAAACCAGAatatatgattcttcaatgagAATCA
AAACTATATATACACtatgcacttacaaacatcatgtcagatctaacaaa
attaataacggcactgtcatcattgttgacaataaaacaaaggattttct
gtcaagagccttgtaaacattccaataaCTTCCATTgaaattaaaactat
ttttagcgAGGTCTGAGGATTGAGCCAAGAACGTCTGGGAGCTCCCGTGc
cggtgaaaaactttaatccttcaatcattttctcaagcgaagagtacgca
aagcgattctagctttatgcTAGTGCCGTGGATCAttgctctattcacat
atatACTGAATtcgaaagatcttctatgtggcgtttttttgcaaacttca
aaagactgatttttgtcccgcttttgcggaactttagcttaagtgcttgc
gtgcatcatagggtacaaagtccagatatgtgtttcccgtaatttttgta
tgaagagttaggtctatactgtcttTTACTCACCTGCGATTCTGTCTGTG
GCGGCGAGTAACTCGCCAAAAATACTTGCACAGAaaatatgagattctaa
aatggttGAGTAGGGCAATGAGCGGaactgcgtagttcatttgcaATTTG
CCccgaaattttgctgctttgaatGGTGAGGCATTTGATGGcaatgcaag
tttccctccctTCCActgcactgatgcaagttaccgaCTTCACAGTGAGT
GTTtcttttctgagagatacaaataccTAGTATTTTAAATGTTATTAACT
TATTAATTTAAAAGTACATGATAGATTGTACCCTGACCAATcagatttta
gatattttttttggGTCGacaattagaaaaatatttcatggtTTTGCATC
ATTATTTTTAGGCTCACCAAAGAGAAATCCAGGCCACAAACCAACAAGTA
ATGGGTGTGGCTCTTATGGGGTTAAGGTATTCATATTGTTTTCTTTATCG
TTGGACTTTAATTATCATCAAGAAAGGCTTCGAAAGAATTGCCTAAGAAT
ACTTTAAATTGTTTAACACAAACGGTTCGGAAGCGCTCTAACTttggttg
gaagggtagagttttaactctgagttttaacattagtcAAGACTTACgag
cttaggatctgaggatccaaaagttcaaaaattttcaatagggcttagaa
taaaataataaaataaaatttaacaaCTAGCCCAAAAgcaactttctcgc
ccgaactttgaATTGATAAAAACAAGGAATTacccaaaattctcaatata
ttttgactaaGATTGTAGGAGCTCACTtctcaaaaaaaaggaaagatccC
TTAAATTTACTTGCTTACATAATATTCcgttcatttttttataagaacaa
actatataggagcataaggcttcgatcgccaaaaattttaaagaacaagt
taagaatattttaaggctttgcagactctaaaacacccaatttcatagga
aaatgaacaagaacactcaaaaaatggcgaaaataagaacatgttaagaa
cattttaggcttaaaactcaaaaagttaagaacattccaaggcttcaaaa
tttttggatgttcttataaaaaaacgtaataTTCCATTCAtttttttCCA
GTTTGACACATCACAATACCCTGGGTTCGAAGGTTGTTGCAATACTCACG
ATGAATGTTATGACACGTGTAATAACGAGAGAGAAGATTGCGACAAACAA
TTCCAAGAATGTTTAAAAGATTCGTGCCTTTTCCATACAGTGAAAGGTGG
TGTCGAGAAAAAACTTAGCAGAAAGAAACTTAAAGACTGTGAAGGTTGGT
AGTAAAACCTAAAAGAGTacacagttgacgctctcttattcgactttcaa
ggggaattggattttcatcgaataagggagcgtcgtttatgagagttttt
tctgttgacggggactttaaatttcatcgaataagggagtctatcgaata
gtagaacgtcgaaatAGAAAGTGTAAACTGTATTTCTtggactacacgtt
tttttatataagaacataaggcttcgatggccaaaatattacgaacaagt
taagaacattttaaggctttgcggactctaaaacacctttTAGAGTTAAA
GACACTAACCTTTAAATACCCtggaaataaataaatgaatgcAAATTTGT
CACGCTTCCATGATTTAGTAATGATATTGTTTTACTAATTATCATAATAA
TATCAAacatgttttgtataagaacacaTTCCGTTAAtgccatacacgtt
ttttataagaacaaactataaaagaccataagcttcgatggccaaaatgt
taagaaaaagttaagaacattttaaggctccgCGGACTTAAAAACAGCTG
ATTTTCCAtaggaaaataaacaaaaatacataaaatttagggaaaatggg
ccatgttaagaacatttttaggcttgaaactcaaaaagttaagaacatct
gaaggctttaaaagttttggatgttcttgtgaaaaaatgtgtaattttCA
AGGCTTGGTGGCTGATACTTTTGACAATTGGCtctgtttacaaaaattct
aaatttttaatACTAACATACGCCGAAATTTGTAGTCTGTTTGGGGTTGT
TCAAGAACACTACTTTTAATTCCTATACTAATGTTTTGGAggcaaacatt
cgatttgctTAAGAGGGATCGCTTCTACAGATTCGAAtgttgcttccata
atggtagaAATTACGCAAGTTAACTAAAGATGAAAAACTCTTTACTTGAA
AGTTATTTGTGCAAATCAGTCTCAAGTCATACTGTTTGTTTCTAATTTTA
GGAATTGCAGACGTGATGTATGCTGGTACATTAGGACTTGGATGTGGGTC
ATATTTAGAAGCTCAACGAAATGCGTGTCTCTGTGATGGAAAAACTTTAT
CTAAAAAGCAGATGCAGAAAATACAACAGAACGAGCTGTAG Coding sequence (CDS) from alignment at sc0000143_pilon:570835..575225+ >XLOC_038214 ID=XLOC_038214|Name=XLOC_038214|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1122bp|location=Sequence derived from alignment at sc0000143_pilon:570835..575225+ (Clytia hemisphaerica_ch_hm2_pilon)
atggccgtcaaaaatttttcttgcaCTGTggtgttttttatctttttaac
cATAATTTCATCTTACTTTACTGTTAATGGAAATGAAATCAATCTTGGGA
ATCtagcagaaatattttcaaccttAGCTGGAGGAGAAGGTTGTGTATTT
CGGTGTCCAAAAGatggccgtcaaaaatttttcttgcaCTGTggtgtttt
ttatctttttaaccATAATTTCATCTTACTTTACTGTTAATGGAAATGAA
ATCAATCTTGGGAATCtagcagaaatattttcaaccttAGCTGGAGGAGA
AGGTTGTGTATTTCGGTGTCCAAAAGGCTCACCAAAGAGAAATCCAGGCC
ACAAACCAACAAGTAATGGGTGTGGCTCTTATGGGGTTAAGGCTCACCAA
AGAGAAATCCAGGCCACAAACCAACAAGTAATGGGTGTGGCTCTTATGGG
GTTAAGTTTGACACATCACAATACCCTGGGTTCGAAGGTTGTTGCAATAC
TCACGATGAATGTTATGACACGTGTAATAACGAGAGAGAAGATTGCGACA
AACAATTCCAAGAATGTTTAAAAGATTCGTGCCTTTTCCATACAGTGAAA
GGTGGTGTCGAGAAAAAACTTAGCAGAAAGAAACTTAAAGACTGTGAAGT
TTGACACATCACAATACCCTGGGTTCGAAGGTTGTTGCAATACTCACGAT
GAATGTTATGACACGTGTAATAACGAGAGAGAAGATTGCGACAAACAATT
CCAAGAATGTTTAAAAGATTCGTGCCTTTTCCATACAGTGAAAGGTGGTG
TCGAGAAAAAACTTAGCAGAAAGAAACTTAAAGACTGTGAAGGAATTGCA
GACGTGATGTATGCTGGTACATTAGGACTTGGATGTGGGTCATATTTAGA
AGCTCAACGAAATGCGTGTCTCTGTGATGGAAAAACTTTATCTAAAAAGC
AGATGCAGAAAATACAACAGAACGAGCTGTAGGAATTGCAGACGTGATGT
ATGCTGGTACATTAGGACTTGGATGTGGGTCATATTTAGAAGCTCAACGA
AATGCGTGTCTCTGTGATGGAAAAACTTTATCTAAAAAGCAGATGCAGAA
AATACAACAGAACGAGCTGTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143_pilon | genome | sc0000143_pilon:570835..575225 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 430-567:4254 |
| Aaloc | 235-426:3052 |
| Aaloc | 172-234:2314 |
| Aaloc | 46-168:40 |
| Aaloc | 1-39:1 |
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