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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000042_pilon:1569108..1574235+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_036471 ID=XLOC_036471|Name=XLOC_036471|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5128bp|location=Sequence derived from alignment at sc0000042_pilon:1569108..1574235+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaataagaaacaacTATTCGAATATTGGTTACAGTTGCCATGGGAACG
CAGTATTTTAACCAATGAGAATTTGTTAAAGCTTCACAAGACAATGAGTG
AAAATGAGGATAAGAAGATAACAACGAAAAATTCATCACCAACCACCAAA
ACTACTCCACCTCCGAAACAGTTGAATAACCCAAAAGGACCACCATATAG
TCACCCTGTTTATAAAAAGATAGCTGCAGCAAATGGTAGAATCAATCGAA
TGTCCAAAAGCCAAGTGGTTGATGCATTGGAATATTTGAAACTAAACCCA
AAGTAAGattaaatcatttttaattGTGAATACGTCCGAAGTGAAATTTC
ACTTGTTTTTCATGCGTGAAAAGTAAGTAGAAATGTATTAAGTGGAACTA
ATAGCTGAAGTGGCTCACTGTCTTGTGGCCCTTAGTGGAAACAATTCCTC
AGTTGTCTAAAAACTGTTGAATTTTTCGAAGCATGTCACGTAAAATATGT
GTAatgttattattatatataattatttttactgtACTTATGTACCTTTC
TCTGAATAGTGGAAGGGGATATAGTCTAGGTGCTCGGGTACTCGTAATGC
GGCAACGCGTAGGGGGAGATTCGTTCGCTAGGTAAGCGTGTCTACTATTT
TACCCATAGGGGAAGTCTTGAAGTGTTACAAAAGCGTTTGAAGAGCCACA
CAAAGAAGCAGCATTTCCTAGAAAACGATTTCACAGAAGAAGAGAAAAAG
TACACGGATTTTTACATTGTGATCGACTTTGAAGCCAcgtgtgaaaaaga
aaatcccAAGGGTTATCAACATGAGATCATAGAATTCCCTGCTGTACTCG
TAGATGCAGATACTCTGGAAGTGGTAAAACTTtaaataattacttttttt
ggtattttcataTATTCTTTGTAGGGGCTAAGTTACATCCGCGTATAGTC
ATTTGATCTTTACACCTTTGATAGTCAGAAAATGTGTGTGCTGTGGTATA
AATTAGGTCTAATGTTCTATAATGATGGCGATCATTTTTTGGTTTGATtc
caaatttttctttcgtCATATAAATATAGGTTCCCAGGTTCTGCTTTAAG
TAAGAAAAGATTTTCCGACCATGCTTGTTATAAACTAGCCTATTCGACAT
CCATCCCAATTTGCGACctttcgggctccaaacatcCAAatgaatttgcg
tcaaaacaaaAGGTTcctttattttcgaaaatcatcaaagtgtaACTCGT
CAAGAAACAACATAATTTTTTCCgttatttgttttttgataAGACAGCCG
CTTATTAACCTAACAGATTGATCAGAGCCAATTACACTGTATGTAATGTT
AATTATTGTTAAGTCTTGGTTGaagaatgggccattccattttatatcca
agcagggggggtggacgaacgtTTCCAGGGGATATAAAAagtatgttttc
atttttccaggggataaAAGGTTACttcaacatttccagggggcaaaaga
ctgattttagttcgtccacactcacttttaagatatgaaaacaatttttc
caagggttctttttcaaattttgacattctCCAGGGGGTATTCACatatt
tcttaaaatctttctttgccTTGTAAAGGTTCGTCTACCGGGGGtatgga
aattttatgaaaCAGCCTAATATTTGACGTTCATGATCTCATCTTATCGT
TTTAGGTATCAGAATTTCACAGTTATTGTCGACCGCTAACCAATccgatt
ttgtcaaaattttgcaGAGATTTGACTGGTATAACGCAGGTAGCATATGA
AAGAATTGATTTatcatggcttggcagcaggttttaggtgccccctaaga
attgagctgacccctaagatttaggtaacccctggttgccaaatatttta
agtgacccctaagccaaacacacgtcaaattttttcgaaaatccttttca
aacaatcaaacaaatacaacagtaagtttagcttattgctaaaaagaata
aatgccctaagaaataGGAGATAAGCTAAGTAAATGCAAaaggattaaag
aatttttacagatgatatattagataccaaatCTTCAGTCTTTTCaatct
agcccccaggtccatctgaaaatatttagatgacccctaacatggttggt
cccccctagccacaggctaaaatcaggtaccaattgctTGCCAGCCATAT
TTATTTATGAATGTTTTTCTCGAAACTGCTATTGGACATCCAAAGAACTA
AAGATATTTTGAAGCTTGTTGTTATCAATCCTACTGTTGCCGTTATTCTT
TATTTCagataaggcgagaccaatttgattagttggtTTACGTGCCCGAC
CTAccctaaaattacaaaaataaaaataaaaataaaattgattttgatag
tacattttttttaattgcctTACAGtctgcaaaattttcaaaatgtggGT
AATTTTTACGAAGCTTTTatgaattttatgttcaattttcatTGTATCTG
TGAATTCGAGCATTTTGTGtccttttattttctgtttcacatttttgtca
tgatgtagtagtttttgctgtgACGAATGCGgttttttaggagattttat
aggtgaaatgctagtttcatttttatttttttcgccgaccgacccaccct
ctttttttgggtagcttggtccgtaaaacaataaattaaattggcctcga
gTCTAGagcacagatatctaagcccgaagggctagatttgcaactttaag
ctttctccagcaaaaaaaagtgaagcaaaaatttgactttttatttcgtg
ccgatggataggatctagcattttaattgttttcggagcgcgagatcaaa
aaacgtaggcggcaaacgctatttcacatctctcaaaccggtgaaattgc
atattttagtcacgtgactctggtaggaaatccttccaaagatgagcttc
actttttgataaaagccgcaaatctagcccttcgggctttacagatatct
gtggtctaGAGGCCAtttcaacgttttttttataagcatgggTAAAGATA
TGCTTATATGCCATGCTTATGCAATGAGGCAAAtgattgcattcaaaaat
agaaccccaaaaagtgaggCTTTCAATCACAGCCACTTTTTAGCCCACAG
CGTTGACATTCTTGTGGCTGCTGTGTAgtacaaaattccataaaataagg
aaattgatgagctttccaaaaatgtggctccctttgaagttgagtgattc
agtcttgaaatataagatggcaaagtgagggcaagttttgtggctgtatg
tcactgtggctcactcaacgggttggcttatatgtgctgtcctgctttaa
gacttcaatattttttaaccgtttttctttaaattgatAGTTTAAGGTCT
TAGATACtaatgggtttaatttgtggctgcagggttttcaatggacttga
aatgtggcttcaatcaaagcatatatgaaaaaatcgtcaactttgagccg
caattctagcccaatgacccaataattttggttccattttttatatttta
tggataaacccttttgctacgagtttcatctgaaaaaaatgatttttact
cattgaacaaatttttggctgctgttttatcaacatagtgtttttcttga
tttgtgccgcaattttggcccattttacaaaaagaaattttcaacctatc
acctttagaaccaatattgtgaagtttcatttgaaaagagttaattttaa
aaaggatattcaaatttcttttttttggctgtttttgaaaacctcacaca
atttttgaatgccatcaaatattttttggctttAGCCTCGATTTACACAT
TCAGCTGGATTTCGTAAACTAAGGCTCAGCATATGTTTTGTCAATGCTTa
agattttttcaagatttgagATTAGATGTGCTTATACTGTAAGTGTTAtg
cttctaaaaaaaaaaacgtgtaaaggcCGTGGCTGAATGCATCATCGTAA
TTCGTTGTTTTCTTCTTCACAGTTGACCGTTGAATCTTCATCGACATTTG
AGACAGTGCTCAATCGTTTTGATAAATGGCTAAAAGATCAAGTCACGCCT
GACCAGAAGTTTGTTATCGTCACTGATGGGTAGGTTCCAAAAAATCCTTC
ATAAATAGCTACCGAAAGAAAGGAATGATGCAAAGGATTATTCAactgtt
tttgttgttgtttttaccgtcgtcatttttggcatcattcgttttgttga
gaagaaaaataaagtttgtgGTTTTTTGAAACGTTTTCATTTAAAGACGG
ATCATTTTTgtcagaaagttttttttggtatgttagtagggggaaatttg
tttgttttttttaggttgctcgatttttttcgtcaaagcacttgttatac
atttttggaaagctaaggggtaggggatcaaaataacttaggtgccaatt
ttttttctgacactttggtgtgattttcggacaaatatgacggtctcagg
caaaaattatagagtcaaaaattaatgaaaaattttagcttgagaaaata
gagacttgttgtatatttttgaaaagctctcgaaaaattaagattagaga
tatattgcaagtataggtgatttctgtatttaactcgagatattaaccct
taaaacagtgtttttcagccagaaacagcttttgtgtccagtttttgcgc
tttaaGAAGCTCAATATCTCAATAAAGCGGTTGAatgtgacgtattgact
gattttccggtttttcaaccaatcagctattgggtccgtgatgtaatgtc
agaagacactGGAATGATGCATATCATAAATAAGGTGTTATTCTCCTTTT
TCAGACCTTGGGATATCGATCGTTTCCTAAAGACGCAATGCAAAATGTCA
AAGATGGAGATACCGCACTACTTTCAGCGCTGGGTAAATGTTCGTAAGCA
TTTCAATAACTTTTATAAAATACATCAAGTGAACGTCGAACAAATGTTAC
AATGCTTAGGAACGGAATTCGTCGGTCGACAGCATAGTGGTATAGACGAT
TCACGAAATATAGCTCGTATTATGATCGAATTGATAAAAGATGGTTGTCA
GGTCATTATCAACGAAACGTTCAGGTAG Coding sequence (CDS) from alignment at sc0000042_pilon:1569108..1574235+ >XLOC_036471 ID=XLOC_036471|Name=XLOC_036471|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1962bp|location=Sequence derived from alignment at sc0000042_pilon:1569108..1574235+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaataagaaacaacTATTCGAATATTGGTTACAGTTGCCATGGGAACG
CAGTATTTTAACCAATGAGAATTTGTTAAAGCTTCACAAGACAATGAGTG
AAAATGAGGATAAGAAGATAACAACGAAAAATTCATCACCAACCACCAAA
ACTACTCCACCTCCGAAACAGTTGAATAACCCAAAAGGACCACCATATAG
TCACCCTGTTTATAAAAAGATAGCTGCAGCAAATGGTAGAATCAATCGAA
TGTCCAAAAGCCAAGTGGTTGATGCATTGGAATATTTGAAACTAAACCCA
AAaaaaataagaaacaacTATTCGAATATTGGTTACAGTTGCCATGGGAA
CGCAGTATTTTAACCAATGAGAATTTGTTAAAGCTTCACAAGACAATGAG
TGAAAATGAGGATAAGAAGATAACAACGAAAAATTCATCACCAACCACCA
AAACTACTCCACCTCCGAAACAGTTGAATAACCCAAAAGGACCACCATAT
AGTCACCCTGTTTATAAAAAGATAGCTGCAGCAAATGGTAGAATCAATCG
AATGTCCAAAAGCCAAGTGGTTGATGCATTGGAATATTTGAAACTAAACC
CAAAGGGAAGTCTTGAAGTGTTACAAAAGCGTTTGAAGAGCCACACAAAG
AAGCAGCATTTCCTAGAAAACGATTTCACAGAAGAAGAGAAAAAGTACAC
GGATTTTTACATTGTGATCGACTTTGAAGCCAcgtgtgaaaaagaaaatc
ccAAGGGTTATCAACATGAGATCATAGAATTCCCTGCTGTACTCGTAGAT
GCAGATACTCTGGAAGTGGGGAAGTCTTGAAGTGTTACAAAAGCGTTTGA
AGAGCCACACAAAGAAGCAGCATTTCCTAGAAAACGATTTCACAGAAGAA
GAGAAAAAGTACACGGATTTTTACATTGTGATCGACTTTGAAGCCAcgtg
tgaaaaagaaaatcccAAGGGTTATCAACATGAGATCATAGAATTCCCTG
CTGTACTCGTAGATGCAGATACTCTGGAAGTGGTATCAGAATTTCACAGT
TATTGTCGACCGCTAACCAATccgattttgtcaaaattttgcaGAGATTT
GACTGGTATAACGCAGGTATCAGAATTTCACAGTTATTGTCGACCGCTAA
CCAATccgattttgtcaaaattttgcaGAGATTTGACTGGTATAACGCAG
TTGACCGTTGAATCTTCATCGACATTTGAGACAGTGCTCAATCGTTTTGA
TAAATGGCTAAAAGATCAAGTCACGCCTGACCAGAAGTTTGTTATCGTCA
CTGATGGTTGACCGTTGAATCTTCATCGACATTTGAGACAGTGCTCAATC
GTTTTGATAAATGGCTAAAAGATCAAGTCACGCCTGACCAGAAGTTTGTT
ATCGTCACTGATGGACCTTGGGATATCGATCGTTTCCTAAAGACGCAATG
CAAAATGTCAAAGATGGAGATACCGCACTACTTTCAGCGCTGGGTAAATG
TTCGTAAGCATTTCAATAACTTTTATAAAATACATCAAGTGAACGTCGAA
CAAATGTTACAATGCTTAGGAACGGAATTCGTCGGTCGACAGCATAGTGG
TATAGACGATTCACGAAATATAGCTCGTATTATGATCGAATTGATAAAAG
ATGGTTGTCAGGTCATTATCAACGAAACGTTCAGGTAGACCTTGGGATAT
CGATCGTTTCCTAAAGACGCAATGCAAAATGTCAAAGATGGAGATACCGC
ACTACTTTCAGCGCTGGGTAAATGTTCGTAAGCATTTCAATAACTTTTAT
AAAATACATCAAGTGAACGTCGAACAAATGTTACAATGCTTAGGAACGGA
ATTCGTCGGTCGACAGCATAGTGGTATAGACGATTCACGAAATATAGCTC
GTATTATGATCGAATTGATAAAAGATGGTTGTCAGGTCATTATCAACGAA
ACGTTCAGGTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000042_pilon | genome | sc0000042_pilon:1569108..1574235 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 709-981:4856 |
| Aaloc | 601-705:4023 |
| Aaloc | 517-600:1706 |
| Aaloc | 304-516:661 |
| Aaloc | 1-300:1 |
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