XLOC_035431 (mRNA) -

Overview
NameXLOC_035431
Unique NameXLOC_035431
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000503_pilon:115000..124526+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035431 ID=XLOC_035431|Name=XLOC_035431|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9527bp|location=Sequence derived from alignment at sc0000503_pilon:115000..124526+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTGCTAACTCAgaggaaatcttttctgaagaGACTTTACCGGTTGCC GATTGATTGGCTTGAAGAGAGCACAACTggtatggaattttttttgtttc ccgttcgtaatacacgttttctttataagaacaaacatttttaaactttc ggatgttcttataagtaTTTTCACCAATTTGCAAGTATCCTTTctcctaa gaaatcaggtggtTTAGAGGCcgtaaagctttaaaatgtttttaagttGC TCTTATATTTTAGTCATGctagccttatgttcttatacagtttgctctta taagaaagatgaaaattccaagcacttttttgtGGACGTTATACGcccaa aatactcaattttgaattgagtcTCAAAACTCAAtagtgaaaaatttcgt gtcaaatatttcaaaaagataaagatagTGAGCAAAATCAGAATgtcatt caattcaattcaattcaattcgaTACTTTCCtttttttCGCAAATAGCat gcttactctcgggtacctaatagccggggggtttggaataagcagggggg ctggaaaaaatctcgaaaatcaataagcgggggggttggaataaaaatgt cctgggtggaaaattttcgaaaaagaggctaatacagcagaattagggca aaagagagaactttcaaaaaaaatttcccgaaaatcaataaacggggggg ttggaataagaatgtcctgggtggaaaattttcgaaaaattagtTAGCGG ccccccccctcccggctattaggtacccgagagtaatacCTGAAAATAAA CCCTTCATAAGTGGCCTAGAGGGGGGTTTGAAAAGATTTTAGCGCCTACA GCGCGTATCAACCACCCACAATGGTTACTCTGAAGgccaaaactcaattt ctaagtCAAAAAACGGCAAGTGaccaaagtgcttggaattttgctTGCTG AGTTGACTCTTTCTAATTCGAGCTACAAGGGATCAATTGTCTTCGAATTG GAGAATTACGGGTAGTATTTTAcaccactttccagctgagagGACCAacg ttttagttcgaattacagtcagctctctctctaattcgaacatttctgta attcgaatctttctataattcgaaataaGATATTGGCcctttcagctaga aattagtataaaatactttttgtaatttgaatgtttcactaattcgaaga aaatctttAGTCCCTTGATGAAAATTAGCTTTTCTGTTCATTAGACGGAA GGTCGTTCCAGAGAAATCGGCAGTCCGCCGTACATtttgtcctgatatga aatatgtgtctgatatgaaacttatgcaaaaataaaacctttaaaagtat aatattctttcaatttttcaggactTGCTGATTCAATTTTGGTTAATAGC AAATTCACGGCTCAAATATTTCGTGATACCTTTACTTCGCTTTCACATAT CGAACCTGTTGTTTTGTACCCAAGCCTCAATTTCGACGCCTTCAAGAAAG AAATTCCTTCCCATGTTCGCGAACGTATATTAAAAGATCAAATACCTAGT GGCAGATCTCATTTCTTCTTATCCATCAATCGCTACGAACGAAAGAAGAA TTTAGGACTTGCACTCAATGCATTTAAAGCAGTGAAGGACAAGTGCACTA CAAGTCAGTGGGGCAGTGTTCATCTTATTATGGCAGGTACAAGTCATTCA TATTAATTATACCCTACAGCTGGAATTTTCGGCTATCTTCTTTAGTTTGC TGTTGCAAAAGTCAAATATGACTGCTCCTTTATTTCGAACcttatttttc aagaaattttatcaAGAAATCCTGttcagttgacgctctctaattcgacg ttctattatttgatacgctccattattcgataattttGAAATCCACTGCC AACATGAAAGTCATAATTGACGCTCTACttttcgataagctcccttattc gatgaaaatctgaCTCTCTTTGagaatcgaattagagagcggcAACTGTT TATAACTGTATAATTGTACATGTTTTATACTCTATAATAGAATATTTTGT TTCTCCGTAATTCTTAGCTTACAGTTTCATTCATAAGTTTGAGAACCGAt cctaaaggccggtctccacttgggCGCGTCGCGATCACACTTtctcgagc aaagcttccacgctattggtcaaaagaaaaatgaagcaattccattggcg cgatctgacgtagcgcgcgctacatttttatgacctAATCtctttttcca agcaaaaagtattgaagccaaaaggtgcggttgcagcgcgcgcaagtgga gaccgaccCTAATACTTATGTATTCTTATTGTTCTTTAACCTTTGTTCCT TTTAGGAGGCTACGATGAACGTGTTATCGAAAACAAGGAATATTACTTAG AGCTCCAATCGTTAGCTTTGAATCTCGGCATTAAAGAGCACATCACTTTC CTACGCTCTTTCTCTGATGATGAGAAACTAGCTCTGTTGGAGTTAGCCAC TTGTCTATTATACACCCCTTCGAATGAACACTTTGGTATTGTTCCTATTG AATCAATGTTCATGATGTGTCCAGTGATTGCATGCAATAGTGGCGGCCCA TTGGAAACGGTTAAAGACGAGGTAAGGATCATTGAGTTTAAGGCCCGAGC GGCTAGAGTAGAGTTTCTAACTTTTcctaggcaagaaaaagtgaagccat ctatttcccattcaaaacgcgcctagaacgcgccgtagTCATGATGACGG ATTGtttctagcggttcctttgtttttgaggactgcatctagcgatagat tttagtttcaatccgcgggcgttctggatgggaaataagttgtttcattt cccattcaggagtctcgagtctttAAATAGTCTCGAGAATAAATTTCCTG ATATCTTTGGGTACTTGTTTTTTAATAAGTCGGTGtttttttAGAATGTA CCAAATTGTCTTTGTCTTTTCCGTTTGAGTATCTCCTGTTTAAGGCAACC ATTCTTAATGAAAACCTTTACATgagtatttcaatttattttgagaaaaa gagaaaatatgaaatattacGAtttttttAGTCCGGCTTTAATTGGATGA GTTGAACAGCTACAATTTAAGGACAAAATTAGGAGTAATCTAGGATGAAA GCTTTCTTATGTGCGGATGGATGAAAAATTCCACAGTCAATTACTCCTCA TCTATGAAAGATTCCGTCTTGAAATTATACTCTCAAATAGTGTACCATAT AAGTTATTAGAAAATGTAAGCAAAATGATGAAAGGAGTAGAAAAGGATGG gatattccaaaaatattgataaaaaacggATTGTCGAAAAGAATGCTTTA TAAACTAATGGATATTATTTTGAGGATGAAAATTACACGAGTGTAATAGT AAAGAGTGTATCTTTCAGAAAATAGCAATATATTTACCGAAAGAGTGACA TAGGatgaaatattccactttttatGTCACCCGAAATCGAATATTGTGGA ATTCTTCATCCTTTTCTACtccttaaatttaaatttgaaaatttatggtA TCAACAAAATAGATTTCCgaagataattttaaaaaattgctatagtaaaa atcagaaaatcttgattttctggAATATTTCATCCCAAATTACCCCGAAA TCTATATCATTGGAATCCTCATGGAAAAATAAGTCCTTTCTGAAATAAGG TCCCAAAATTCCTAACGTCAAAAAAGATATCGCGAAAAAGATGATTTTAA AGATCTCTCAAAAGTCCATCAGgtacattctaaaaaaaacacCGACAAAA GCATATTATTTATGGAAAACAGACTCGCTTATGCATAAGCTattatattt tggaatcaaGCTCAAATTATGCTTTTGATATGCTTAATTTTCCGACAAAA ATTGGTTcattaaaaatagaaaagaaaaattaacctTTCCAACCAAGTAC AAAACCCGGAACATTGACCAATGACCAAAGCTCACTGACATGCTAAAGGT ATGCTTATTTTTCACGAAATCCAGGGATTAATAAGCTTATGAGAATGAAA CATGTATTTCAAGATTATGGTAtagcgtacacgttttttataagatcaaa cTGTAtaggaacataaggcttcaagagccaaaatattaaaaatatgctaa gaactttttaaggcttttttgactctaaaacttttagatttttaggaaat cacacaaaaatactcacaaaacggTGAAAAAGTACGTAAAGAATAAAGGC ATAAATAGGTtttgttgttcttataaaaaacgtatagtGTTTTTGTATTT aagtagtaagtctgcgaccgcagtcggaggcgacccgaaggctcctcttt cgatagctttcTACTCGagggtaggggagggcgccactctttctccttgg attgctccacttacccttgatccgtctctttaattgctgagcatcaagca gagaagcatcaagtaccattttgagaatctttggtatgacccgactgAGG GTTGAActcacaaccttgcgaaccgtagccggatgatctaccactgcact acggttcTGTATTTGATTCATCTACTGGACACAATTTACACAATCTTTTC ATCTCAGGTAACTGGATATCTATCTCCTCCAAAAGCTGATGAGTTTGCTT CAAGAATGATGAAATTTGTGAACGACGAAACGCTAAAGAAATCGTTAGGA GCGAACGGACGCGAAAGAGTGCTTCAGCATTTCTCGTTTGAAGCTTTCAC AGGAAACTTAGATGAAACAGTatgttggttgttttttttttgcttccttt ttggacctaccccggtggggtggaggtcctataaattaacccatgttcgt tagttagttagtgtgttaccagcttttctcgagattggctcattagtttt ttctgatttttagcacaaaggtgcatgaccataaaccctcgaatgtgacg gagcccgattttcgaaaaaagaattggggggggggtAaatttgggccaaa aaacggcttaaaatcgggttttttggactttgtgaaaaattggatcatta aatttttctgatttttagcatgaaagtagggtacaatcataggtaaaaga tggctcaagcagattttttgaaaaaaaaatttttgactcaaaaatcgcat ttttatctataagaaccgcttttaataagaatacatcaatgttctaagcc atattattattattatttttattagttttttttaagatgaaaatgtcacg gtagagggTAATGATTTGAgTtttctgtaaacacttattatttttttggc tgaaaaacgaatCtttatctatAagaatcactatttatgaacatagatca atgttattagccaaaTtttttttttattattatcttttctaacagaagaa aatgtcacggtagagtgcgacggtttgagttttctggaaaccttatttat taagctgtgcatttttctgatagtggtttttataaagaaaagcgcttaat agcttttttatttcttttacgtgaaaaaagctgaaaaaggagaaaaattc gtgttaatttcagatcatgcaaatttcaaggccgttgattacttgcctag taatattcgtgtaataaggtactttaggcgtacaaactttcgcgagcaaa aactttcgcgattttcgtgaattttggcccttttcgcgaaagtaaatgtc tttaaaaattctaggaaggaccatttgcgaaagtttatgctcgcgaaaaa ctcttgacaaaatagaaaatctgtaaaacttcaaactttgaataaagtgt aacttttatggcactttttagcctgctaaacgACGAATAAGTCAAgagac aaatgtttcaagccaatccaagaagtattctcaattttacgtcttgattc gcgaaagggtatactcgcgaaaaatattttttctgttaaagtcgcgaaag taaatgtcgtgaatttcgcaatttttttttgtacgCCTGTAGTAGTCTGA GACCAGGTTCACAAGTAACGGTTCCGTTTGGCtgcgaaacgaaatgaagc cattctattggttagaagttaCTTTATTAGCGAGTTACTTCattagtgag tttatgtatttgcgcttTCGAGGACGGcgaagtgactgaagcgatttgga ataactcGCGCAGTTTTAACCcgaaaaatcgaggacggtaattTACCTTC Atcctcagttgatcaggatctagacaaattagaagcttaccgtctccgtc acagATCCATAAACTCGCTTTTTCTTTTCGGatcgaaacggaaccgtagc gtgtgaacatggtctgaaTTACATACCTCTACAAAACCTCAGgtatttga gggggggggggtgaaatcGCTAGTGTATGTCAGCAgcctaatacaccttt tcgaccgcagtcgagcggtgtcacttaattatttaacTATCCGCTAAACT CGATTCaatccttttttggacctaccccggtggggtggaggtcctataaa ttaacccgtgttcgttagttagttagttcgttcgttagttacaaactttt ctcgagattggctcattcaatttttctgattttttgcacaaaggtgcatt actataaaccctcgaatgtgacggagcccgattttcgaaaaaaaaatttt tccggccggtagaaccggaaatgtcccgaaaaaagcggttttttgagatt ttctcgagattttatcattagttttttgcgattttttgcacatagatgca cattagtactgccgaaaaggtgtcgaaaccgtttgccgaaaaaaaatttt ttccgtctgtagaaccggaaatgtgccggaatcgtcgttttttcacattt ccgtcacatttttttcaacttatttaatgtttctctttacagaaaaatgt tctttatgatgatgcccaaaacttagcatcgtttgatttccaaaaatcaT CCTTtaaatccggaactccttaaaaatcgccggaacagccgaaaaccggc gtaaaaaacggttttccttcattttttcaacttatactacctcgacagat tttcatgatttttttgcacaatgatgtaaaatggcaatgcccaaaatgtg acagagccaattttcgaaaagaaatttttcggCCGCTAGatccggaaatg tcccgaaaaaaagcggtttttttgagattttctcattagtttttttgcga ttttttgcacatagatgcacattagtactgccgaaaaggtgtcgaaaacc gtttgtcgaaaaagtttttttccgtctgtagaaccggaaatgtgccggaa atcgtcgttttttttcacatttccgtcacatttttcaacttatttaattg tttctttacagaaaatgttctttatgatgatgcccaaaacttagcaatgt ttgatttccaaaaaatcatcctttgaatcctcCGAActcttaaaaatcgc cggaataggcgaaaaccggcgtaaaacggttttccttcattttttcaact tatactcgacaaattttcatgatttttcgcacaatgatgtaaaatggcaa tgcccaaaatgtgacggagccgagTCTGATTCCTTTAAAACGGAATTTTC CGGGCGGAAATATAATCAATCTgtgaaataatgaaaactgaaaactaaat gttttttttacttcagttttaattttctctgaatgattgattaaagtgtc gatattatttttctttcaccgttaaacatcgatgcgtttcttaattgctt tctccgttccaatagatatataaatcgaaatttaaaattatacattactt ccattaaattctaattattcgttttataaataggtaggtccattaaagta ttacttgttgaTACATTTTTCTactgtctataggtgcgaaaaaaggactg ggacggtttagTTGGATAAAAGCGGGCAAGAAAATGCccgcgtggcaatt ggcggctacggtcgaaaaggtgtattctaaCCTTTTTACAACCCATTCAT CACGCTCTGTATTTGAAAAGAATAATACCTAGTTATTTCGGACACTCTCC atgtcaaaacgaggctaaaacttatctagcacccagatggtgaaattttc atccgacatgcTAAAGCTCTGatggtcgggaaaattttcaacatctggaa ggtttacattacggaattttgcgagactgcgtcaagaattttgcagcggg aggtctggtaacccagccctcgttttcagggaattggcgggtccaaccga aatatttctaGCTTTACGggcaagggctgttgaacccgactgggggcggc acatcaaaggccgactatcattcctctccgatggaaAATTGGCCCGTCGG AATATTAAGACTAAAACCTTTGTTTACGCAGCCACGAGACTTCAAGAATA GTCGGATTTGGCAAAGATTTGTTGCTCTTGTTCCTTTGTTTGGGTGAATA CCTTGGGGTCTTCCTTTTAATCTTACAACAATCTAATCTAATAAACTTAT AACgggattttccagaaaaaaaaatttgaatatgggtgttgaggatataa cattttttggaaatttacccacGGACATGTGACTTTTGACCTGCCGGACA Acaggttttaccccccggacaagcatcagttgaccccactggacattcaa aattactctCAAACAGGGcgaaattacccccaaacagagaaAATTTACCC CCATGCAAGGTAAATTttcactccccccccccccctgacacTATATCATC CACCcgccatgtacggacattttctggaagagcccaatcctagctttttt aagaaaaatggaTCCAAATAATGTTACGGCCAATGGCGGTCAATTGACTT TGATATGATTTGATGtgaacaaataaaaaatccaaaataaaatcagccca attcatgatattcatgatgtaatatTTTATACAGAAGCACCCGAAATAGc ccgggcgtttgccactagttttattTGCAACTTTATCGTACTTTACCCAT AACGCTTTTTCTGAGCACTGATTGGTTCATTCAGGCCAATTACATCataa ttttgagtttcaaccaatcagatcgaTTTGATTGTTAAGGGTAAGTAGGG TAGTTGCAAACACCCACACCTTGTTTTTGctgtttccgtataaaacatta cgtcatgaattcatgatttacatgttttttttatatgagAaCATCCAATA CTTTTCAAGTCTTTGAATGTTCTTTACTTTTTGAGTTTAAGCCTAAACag gttcttaacatgttcttattttcaccattctgtgattattttagtccatt ttcttaagaagtTGAGTGTTTtaagagtccacaaagccttaaaatgttct tatatagtttgttcttataaaaaaagcatgtaattttcatatacttttca GGCCCGCGAACTGGTCAACGAAGAATCAGCTTATGAAACAGGAGTTTCTG ACattattttacgttatggtactttactttatatatttttactatttcta ggtattttctattatattatcattttt

Coding sequence (CDS) from alignment at sc0000503_pilon:115000..124526+

>XLOC_035431 ID=XLOC_035431|Name=XLOC_035431|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1896bp|location=Sequence derived from alignment at sc0000503_pilon:115000..124526+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTGCTAACTCAgaggaaatcttttctgaagaGACTTTACCGGTTGCC
GATTGATTGGCTTGAAGAGAGCACAACTgATGTTGCTAACTCAgaggaaa
tcttttctgaagaGACTTTACCGGTTGCCGATTGATTGGCTTGAAGAGAG
CACAACTggactTGCTGATTCAATTTTGGTTAATAGCAAATTCACGGCTC
AAATATTTCGTGATACCTTTACTTCGCTTTCACATATCGAACCTGTTGTT
TTGTACCCAAGCCTCAATTTCGACGCCTTCAAGAAAGAAATTCCTTCCCA
TGTTCGCGAACGTATATTAAAAGATCAAATACCTAGTGGCAGATCTCATT
TCTTCTTATCCATCAATCGCTACGAACGAAAGAAGAATTTAGGACTTGCA
CTCAATGCATTTAAAGCAGTGAAGGACAAGTGCACTACAAGTCAGTGGGG
CAGTGTTCATCTTATTATGGCAGgactTGCTGATTCAATTTTGGTTAATA
GCAAATTCACGGCTCAAATATTTCGTGATACCTTTACTTCGCTTTCACAT
ATCGAACCTGTTGTTTTGTACCCAAGCCTCAATTTCGACGCCTTCAAGAA
AGAAATTCCTTCCCATGTTCGCGAACGTATATTAAAAGATCAAATACCTA
GTGGCAGATCTCATTTCTTCTTATCCATCAATCGCTACGAACGAAAGAAG
AATTTAGGACTTGCACTCAATGCATTTAAAGCAGTGAAGGACAAGTGCAC
TACAAGTCAGTGGGGCAGTGTTCATCTTATTATGGCAGGAGGCTACGATG
AACGTGTTATCGAAAACAAGGAATATTACTTAGAGCTCCAATCGTTAGCT
TTGAATCTCGGCATTAAAGAGCACATCACTTTCCTACGCTCTTTCTCTGA
TGATGAGAAACTAGCTCTGTTGGAGTTAGCCACTTGTCTATTATACACCC
CTTCGAATGAACACTTTGGTATTGTTCCTATTGAATCAATGTTCATGATG
TGTCCAGTGATTGCATGCAATAGTGGCGGCCCATTGGAAACGGTTAAAGA
CGAGGAGGCTACGATGAACGTGTTATCGAAAACAAGGAATATTACTTAGA
GCTCCAATCGTTAGCTTTGAATCTCGGCATTAAAGAGCACATCACTTTCC
TACGCTCTTTCTCTGATGATGAGAAACTAGCTCTGTTGGAGTTAGCCACT
TGTCTATTATACACCCCTTCGAATGAACACTTTGGTATTGTTCCTATTGA
ATCAATGTTCATGATGTGTCCAGTGATTGCATGCAATAGTGGCGGCCCAT
TGGAAACGGTTAAAGACGAGGTAACTGGATATCTATCTCCTCCAAAAGCT
GATGAGTTTGCTTCAAGAATGATGAAATTTGTGAACGACGAAACGCTAAA
GAAATCGTTAGGAGCGAACGGACGCGAAAGAGTGCTTCAGCATTTCTCGT
TTGAAGCTTTCACAGGAAACTTAGATGAAACAGTAACTGGATATCTATCT
CCTCCAAAAGCTGATGAGTTTGCTTCAAGAATGATGAAATTTGTGAACGA
CGAAACGCTAAAGAAATCGTTAGGAGCGAACGGACGCGAAAGAGTGCTTC
AGCATTTCTCGTTTGAAGCTTTCACAGGAAACTTAGATGAAACAGCCCGC
GAACTGGTCAACGAAGAATCAGCTTATGAAACAGGAGTTTCTGACattat
tttacgttatggtactttactttatatatttttactatttctaggtattt
tctattatattatcatttttGCCCGCGAACTGGTCAACGAAGAATCAGCT
TATGAAACAGGAGTTTCTGACattattttacgttatggtactttacttta
tatatttttactatttctaggtattttctattatattatcattttt
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_035431XLOC_035431-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000503_pilongenomesc0000503_pilon:115000..124526 +
Properties
Property NameValue
Aaloc823-948:9402
Aaloc661-822:4608
Aaloc397-660:2358
Aaloc82-393:1374
Aaloc1-78:1