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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000299_pilon:213454..219161+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_034942 ID=XLOC_034942|Name=XLOC_034942|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5708bp|location=Sequence derived from alignment at sc0000299_pilon:213454..219161+ (Clytia hemisphaerica_ch_hm2_pilon)
tggcagcctggacacttcaaaaaaggtcggatttggccgaaatttggcac
acttgttccttgggtgaatatctgggggtgtttttttcattttttgaaaa
ttttgattttgatttttgaaaggctcttaggacgaggacactattctaac
gcacataaaaaaatgaaaaaattaagataaaaacacccccaggtattaac
ccaaggaacaagtgtaccaaatttcagccaaaacggacaaagtatatttg
ctacctaatactaaatatttgaaatgttacaattgggccttctaataacg
ggaaaatctgaagttgagcccagtgcggtgcgcacgttcgactatatcTA
AATGTTACTCGAATTTCAAGCTATGAaattcatttttgcaatttttacag
GCTGGAAACTGACGTCTCTGCCAAAAAGAAACGAGAACGCTATCAAACTA
CAAAAGAAAAGACTGTTCCAACTGTTCGAACTGCTGTCGTTGATCAAAGT
ATGTGTACTGTCTGTGCTACGCAGAAGTACAACAGCCGAGATCCGAAACG
ACTAGCCACGTAAGTATATAACCACAAGCCACACACGGTGATCTGTGCTT
TTTGAAATTCGTCATTCTTCCGCCAAGAGATTTTTAGAATAAAGACGAAA
TAACGGATTTTTTCCAGTTGGAATAATACTTCAGTTCTCTAATAGTAATG
GGGATAAAACTTGGTTGGACTTCTGTAACCACCCTGGTATATAAAGAAAG
GTTTCTAATTACTGCACCTCttgctttttgttttaaaacgatTCTAGact
tcttttgaaaagaaaacttcaagtgGGTGAAAGGTTTCGCACTTAGGCTA
AAAAATTGCTACCCCTAGCCACGTGTTCATTGAAACACTTCATATTTCAT
CATGTTTCTTTGGTTATAGATACAAAAACACATACATCAGCTACCTAAGC
ACTGGTCGCAGCAAGAAGCATAAAGCTGACTATATGGTATGTCAACTTCA
TAGTATTGCATTTTAAAAAACGTTACAATGTACTTGCGTATTAAAGTAGA
TATGATGAACACAAgataaatctgtttttttttaaatcattctaCGAAAG
CATTCTATTTTATGATTCAAAGAAAATTGGCAATCCGCACATGATACATG
TAActtcgctgatttcaaatattgtttttaggttttcaTAACTTTCTTGA
AGCAAAAGTTACAACCCTTCAAAGTGGGTccattttggccatttttgtca
atttgtGGCCATTTTTAGCCTACTTTGAAGGGTTGTAACTTTTCTCTAAG
AAAgaaaacatatttgaaatcagcgaagTTTCAATTTCCAGAAAAGTATA
AATTcataatcttcatttttctatctttcattttcgaattttttgaaaGG
ATTTGAAGTCTTAAAATCATCCGCCTAacattatcttttcaacggagGTA
TTGCTTTTAgagcaatgtatcaaaatgtttttttggaacAGCCTTTAGGT
GTTTCTAAATTTTGGTTATCAGTCACCtaatttttatttgtatttccCAT
CAGTCTTTTCCCTACCCTAATGATTTATGATTGAGGTTTTTGCTATTatg
atttgaattatttttctttgtcagAGGGACGAGATCGAGCGAGGGCACGG
TTACGTCGAGTGCGTTGTCAACTATATCGAATATTTGGTTGGTTTGGAGC
AATCAACCTCCAAGATGTCTTCTTCTGAAGGCCTTCAAGAGATCTTTCAA
ATCACATCAGATAGTCTGAAACTAGTGGAGTAAGTCCTGTTTGTACTTTT
TGTgtctttgatgaaatttttcagtcattttgaaATCTAGATCTTGAATG
ATGAAATGCTATGTTCTTGATATTTATAAATTAACGTAATGAAATGATCA
AACTAAACTTTAGCCGGTTTCAGAAAgactcattttttcattttagtgaT
AGCCCACTATTAATGATTTCCATGTAATTTTAGGTACCTTGTTTCGACTT
ATGGTCGAAAAATTGACCCCCTGATAAATACGTATGACAAAAGGTTTctg
tttttatggtaagttttAATTCGTCTGTGTCTTACtgtatttgaagaaaa
aatgaatgattTAACTTACAAAGAAAGAATCGTTTCGAAGTCATCACTCG
CGTAACAGTTGCGTTTTATTCCAAAACAAAACGAACCAATTAATGCCCAG
AGATGGATTTATTGTTTTGGAACAAACAGGAACTGTAACCGGCTGAAAGT
GTAGCGAGTTCAAAAATATCGCGAAGTAGAATAGAAGCTACTGCGTAAAA
GATACCGCGACGTTACcgtgctttttcttttttagcttgCGGTTGCAATC
CATCCTCAATTTGAAGTTGtataaaatgaagaaagaacaaacaaagaaaa
acagcaaggtacgaaaaatgaaagGGCTTGATGATGTGAACACCAAActc
gaaacgtcaaaaagcaTACCTTACAAAACGGTTTCGTTCAACTATGAACT
ATGAATCTtttccgttttcttgctccgaaccCTTCCAAACCCAATATGAA
CGATTCTTAATTGTAACGGAAACCGTACCGGAGCAATGTAAAACTTTGAC
ATCTGAGATCTATAGTTTTTCTCTTATTTGACACATTTCTAATGTATTTC
ACTTTCACTTCTCTCTTTCAGATTTTGTCAGAGTATTATCGGGTAAGTAA
CTAGCCCTTCAGTTGATTTCAAGGAATAATCGGTAACATTTCTGGTCTAG
GTATAACACCTACAGTCTTGGCCGAAACCGTACCAAAATTTATTTGTTAT
TTCATTTTCTTCCCATTTTGCGATCTAGGTTCTAATTTTTATTGGCGCAA
ATTCGATTAAAATCTCAATCTCGATTTTGAAAAGGCATTAAGCAGAAATA
ATTGTATTGGAGGTTTTCTACGGAGAGCCATAGCCCAGAATAATCACCAT
TGATTATGcgcttttaaaagttttcatttaaaTTGTTGTAAATTGGAAAT
AATAATACCTTCTTTCATCATTTCAGCAATATAAACCAATGAACGCGATT
GGTCGATCACCTTATTCTAAACCAAATCAACGAGGGTAAAAGATCATTCA
ATATCTAACTTTTCCTTTGCTGCGCCTCACTTGTGACAATGTAATCATCA
CAAGTCAAAATACTACCCCTGTTCTTAGAAGGGAAGTTCTTCATCGGGAA
ATTGGTTAATGTTTTCTGCCACAATTccttagaatttcttttcattGCTG
TTGCTTTGAATCCATATTGCATTATGAATAAGAGAGATATACAATGGGAG
CAACAAATTTTTAACTCGACTTTTTCTTCATTACAGCAGCACTGGTACAC
CATCCCCCTCCTCCCCCATTTCTGACCCCTCCCCTGGTGGGAGCGTGGCA
TCTACTGGAAGCGCCGGTAGCAATAGTAGTAGTAATGGGGTCACCATACC
ATGTGATATGCATGAGAAGAGTTATCAATACCTTTCTAATACCAAATATC
TTGTCAACGGGCACAGACTTTGGGATGACTCTGAAAGTTTGACCAATCAA
GTGCAAGGTTTGTTATTTTGGATTAGTACTATATTTTCTTTTACACTATC
GTTTGATACTAATGATACTTAATCTCAAATTGTTCCCTTGTGctctgaat
tttttatttttttggacctaccccggtggaggtcctataaattaaccttt
gtccgtttgtccgttcgttcgttagttattagctttcctcgcgattggct
cgttagttttttctgattttttgcacaaagatgcttaactataaaccctc
gaatgtgacggagcccgattttcaaaaaaaaagatttttgggcaaaattg
ggcaaaaaaacggctaaaaaacgggttttttggactttgtgaaaaattag
gtcgttaattttttctgattttttgtatgaaagtagggtaccatcgtagg
taaaagatggtttaagcagatttttgcaagaaaattttgttggctcaaaa
aacgcatgtttatctataagaatcactattaataagcatacatcaatgtt
cttagtcaaattactcaattttttttatgagatagatgttttttttctca
tgagggcttacttttaaagaatatgtgtgtttcgacatgaaattttggtt
gcttggcgtgtttttatagaaaaactggccaaattctaTATATTCTTATA
AGcgcattatcaattacttaggtattagcttttctcgagattggctcttt
cattctttatgattttttgaacaacaaagatgcataactataaaccctcg
aatgtgacggagcccgattttcgaagaaaaaaacttgggggcaaatttgg
gccaaaaaacggctaaaaaatggtttttttggactttgtgaaaaattgga
tcattaattttttctgattttttgcaggaaagtagggtaccatcatacgt
aaaagatggttcaagcagatttttgcaaaaaaattttgttggctcaaaat
acgcatgtttatctataagaatcactattaataagcatacatcaatgttc
ttagtcaaattactcaattttttttatgagatagatgtttttttgctcac
gagggcttacttttaaagaatatgtgtgtttagacatgaaattttggttg
cttagcttgtttttatagaaaaactggccaaattcgatatttttttataa
gcacactatcaattacttaggtattagcttttctcgagattggctctttt
attctttatcattttttgcacaaagatgcataactataaaccctcgaatg
cgacggagctcgatttttggagaaaaaaattttggggtaaatttcagcta
aaaaatggctaaaaaaagggttttttggacttgttttttttctgaatttt
tgcatgaaagtagattaaagatggctcaagcagatttttgtaaaaaaaag
aatttttcagctcaaaaagcgcatatttatctataagaatcactattaat
aagcatacatcaatgttctgaaaattactgaattttttgatgagatatgt
atTTTTGGTCTCGAAGtattgaatatgaaagaatattttcaagagcatga
aattttgctttttaaacgtgttttttttataagaaacaaacgactaattt
tgatagatcgtcactatttgtgttctaaatgattgtttaatggtcacgct
tatgtagatattaattatacattatatatatgtgttaaatgcataaccag
gtaggtccataaaagtatcacttgtttattttttatcaggTTTCATCCAA
AGTTTGTCGAAGAAAGCAGGGATACTCACCATGCAGAGGTACTTggttaa
tttataatttttagggtggtcttcatttttcttttgctttttcttcgtcc
tcaccttttgtttcGATACCCTATATATCTTGATTGTAAGCAATCTTAGA
TCTACACTCACTGTTGTTACCTATCTACCCTCATCTTCGAATTCCTTGCG
AACGATAAACGTGAAATACCTTTGGTACTGAGTTTCGCAGACCTGGATGA
ACCGTCTGAATATCATATTTGCGTGTTTTCAATTCTGAAACGTGTCATAA
ACATattcctttttttcattttcatccagCACGACGCTACATATCGTCGA
TTTCACTCGTCAAGGACTATTAATCATACAAGAATCGAGAAAAGCTGCTG
TCTCCTGa Coding sequence (CDS) from alignment at sc0000299_pilon:213454..219161+ >XLOC_034942 ID=XLOC_034942|Name=XLOC_034942|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1704bp|location=Sequence derived from alignment at sc0000299_pilon:213454..219161+ (Clytia hemisphaerica_ch_hm2_pilon)
tggcagcctggacacttcaaaaaaggtcggatttggccgaaatttggcac
acttgttccttgggtgaatatctgggggtgtttttttcatttttttggca
gcctggacacttcaaaaaaggtcggatttggccgaaatttggcacacttg
ttccttgggtgaatatctgggggtgtttttttcattttttCAAGAAGCAT
AAAGCTGACTATATGCAAGAAGCATAAAGCTGACTATATGAGGGACGAGA
TCGAGCGAGGGCACGGTTACGTCGAGTGCGTTGTCAACTATATCGAATAT
TTGGTTGGTTTGGAGCAATCAACCTCCAAGATGTCTTCTTCTGAAGGCCT
TCAAGAGATCTTTCAAATCACATCAGATAGTCTGAAACTAGTGGAAGGGA
CGAGATCGAGCGAGGGCACGGTTACGTCGAGTGCGTTGTCAACTATATCG
AATATTTGGTTGGTTTGGAGCAATCAACCTCCAAGATGTCTTCTTCTGAA
GGCCTTCAAGAGATCTTTCAAATCACATCAGATAGTCTGAAACTAGTGGA
GTACCTTGTTTCGACTTATGGTCGAAAAATTGACCCCCTGATAAATACGT
ATGACAAAAGGTTTctgtttttatgGTACCTTGTTTCGACTTATGGTCGA
AAAATTGACCCCCTGATAAATACGTATGACAAAAGGTTTctgtttttatg
cttgCGGTTGCAATCCATCCTCAATTTGAAGTTGtataaaatgaagaaag
aacaaacaaagaaaaacagcaagcttgCGGTTGCAATCCATCCTCAATTT
GAAGTTGtataaaatgaagaaagaacaaacaaagaaaaacagcaagATTT
TGTCAGAGTATTATCGGATTTTGTCAGAGTATTATCGGCAATATAAACCA
ATGAACGCGATTGGTCGATCACCTTATTCTAAACCAAATCAACGAGGCAA
TATAAACCAATGAACGCGATTGGTCGATCACCTTATTCTAAACCAAATCA
ACGAGGCAGCACTGGTACACCATCCCCCTCCTCCCCCATTTCTGACCCCT
CCCCTGGTGGGAGCGTGGCATCTACTGGAAGCGCCGGTAGCAATAGTAGT
AGTAATGGGGTCACCATACCATGTGATATGCATGAGAAGAGTTATCAATA
CCTTTCTAATACCAAATATCTTGTCAACGGGCACAGACTTTGGGATGACT
CTGAAAGTTTGACCAATCAAGTGCAAGCAGCACTGGTACACCATCCCCCT
CCTCCCCCATTTCTGACCCCTCCCCTGGTGGGAGCGTGGCATCTACTGGA
AGCGCCGGTAGCAATAGTAGTAGTAATGGGGTCACCATACCATGTGATAT
GCATGAGAAGAGTTATCAATACCTTTCTAATACCAAATATCTTGTCAACG
GGCACAGACTTTGGGATGACTCTGAAAGTTTGACCAATCAAGTGCAAGgT
TTCATCCAAAGTTTGTCGAAGAAAGCAGGGATACTCACCATGCAGAGgTT
TCATCCAAAGTTTGTCGAAGAAAGCAGGGATACTCACCATGCAGAGCACG
ACGCTACATATCGTCGATTTCACTCGTCAAGGACTATTAATCATACAAGA
ATCGAGAAAAGCTGCTGTCTCCTGaCACGACGCTACATATCGTCGATTTC
ACTCGTCAAGGACTATTAATCATACAAGAATCGAGAAAAGCTGCTGTCTC
CTGa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000299_pilon | genome | sc0000299_pilon:213454..219161 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 775-852:5631 |
| Aaloc | 727-771:5292 |
| Aaloc | 505-723:3338 |
| Aaloc | 445-501:3027 |
| Aaloc | 424-444:2672 |
| Aaloc | 352-423:2337 |
| Aaloc | 277-348:1985 |
| Aaloc | 121-273:1625 |
| Aaloc | 97-120:963 |
| Aaloc | 1-93:1 |
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