XLOC_033517 (mRNA) -

Overview


Name	XLOC_033517
Unique Name	XLOC_033517
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000267_pilon:158555..165135-
coding sequence from alignment at sc0000267_pilon:158555..165135-

mRNA from alignment at sc0000267_pilon:158555..165135-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_033517 ID=XLOC_033517|Name=XLOC_033517|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6581bp|location=Sequence derived from alignment at sc0000267_pilon:158555..165135- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGCCAATCAATACCATACAGAAATTCAATCTCATATGAAAGCGAAAG
GAAGGAGCGTGAAAAGGAAGTCATGAGACAAATCAAAGAAAAGATCATTG
CATCACGACAGGTAAGCAAGTTTTACATTTTTACGAGAATTTTGATTAAA
AGGAGGGCGGTCCATTTTGGGACACGATTGGCCAAGGGTTCAGTAGCCTA
GACGAGAGATGTGCATAATTTCTGTAGAGAAGCAGATTGACGCTGTAATT
ATCGTTTCATACACAAATTTTGCGTCCCTCTTGTCTACGCTACTGGGGTT
GAAAACATTTACTTAGCCTTAAAGCTAAACACATATACTCCACTGTTTGT
GCAGAGTTCAAGCACTGATCACTAGCAAGAGTAAGCCACCATATTTCAAA
AGAGTTCATCATTCTATGATTAATTAGATTTGATTTTCTAAAATGTTATC
TTTTGAAGTATTTGATGTTTTTTGGAAAAGGTAGATAATAAGGGTCAACA
ATTTCTTCCACAGCTAAATACTTCGCAGCTTTAATTTGACTTGGATAAGA
CAGAAAAGAACAGTATAAGATAAAGAAAACTGGTTAAACTATATAGTAAG
GCAGTCATTCTGAATACAACATATTTTGTTAGGAAATTGCACTCATTGCA
ACACGAATATAACTTTTGTGGTCAGAGCGCCATGGAAACTAGTCAACTGA
GAAAAAACGGGTATAGTGTTGTTTCGAAAGGCTTATAACGCCAGCCCCCT
ATAAATAGGACTAATAGCAATAATTAAAGACAGTGACCTGATTTTAGCAA
TAAATTCATACATGTCACATGTTTCATTCAGAAAGTTATTCACTCCCTCG
ATTAAGATTGACAAGATGCGCCACCAATAAAATTATTGAAAAAATAAAAC
TTGGAAGAGACTTCATCAATTAAAATATTGACCCAATCGAAATGATTTCG
CATCCCTATTTGCAGCCTTATAAATCGAGTGGGAGTTAGTGACTCGGAAT
ATGGGACAACAAGTTGATATTCTCATAAAAAAGTGGTTAAGAACAATAAT
CTATCAAACGAAAAAATATTTTTTGATAAATTTATATTATATCACTCTCC
TAAGATCCGCAATTTGCGATCCTATGTTATTGCTTTTTTTTTTTTTTGAT
TGTGCAGATAACTATCGTACGAATTTATCCTTACTCAACTAAAAAGAGCT
CACTATCACTTTCGAAATTCCTATTGGCAATATATGGTGTAACCATAGAT
GTAGAAAATTTATGTTGATAAAAATTTGGCTGATGATCCATACGACTTGG
CATGAAACTTGTACCAATATCTATATTACCAATAAAGTTATATTCTCAAC
CAAACGTAAACAGCTCTGACTCAGAAGACCTAGAATTGTGATGAAGAGGA
TATAAAGAATATAAATATCTCAATAAAATCCATTTGACGAATTTGAGTCT
CTATTGTTTTAGCTCTGGAGTATTACTCTAACGGGATGGCTATTCCCTTA
TAATACACCCCTGTCTCACAGACCCGGTGGGACAATTAGACAAAGTCCGA
AATTTTTAATCTCTAAGCGGCCTTTTTTTGGGACCCAAAATAGGTTGTCC
ATTTTAATTTTAATTTTGCTACATATTAAGAATGATGATATTCGAACGAT
TAACTGAGTAAAAGTTTGATCTCATTTAGGTCATGACAATTTTGCTTTTT
TATGTTGATATTTCGTCAATACTTTGTTTTGGTTCCAAATCCAAATCCAA
ATCTATGGTTGAGCAGAAAAAACTGTGAGGTTGATCTGTGATGGCTCCAC
TTTTAGACCTCAGGTTTTTCTTCAAGACTAGGATAACTAGTTACTAGGGA
AGTTAAAAAATGTCGATGATAAATTTTTAAAAAGCCGATTTCTTTTCTGA
TTCCTCTATTGAAATACAAAGCATGACATAACAGTGACATAACAGTAACA
TAAAAGCTTGTAGCTTGAAAGTTAGACCATAATTTTGATACTATTGGAAA
TATATATTTCCATATTCTCTCGAAAAATATTCGGTCTAGGCCCCCCAACG
TGGTCAAGAGCTATGGCTATAGTTAAAAACTTTGGTATTTTGACCTCACT
TGACGCATATAATTGTTTCTTTAAGACTTTTAAAGTTAAAGGGTTTAATG
GCTGAGGGTATTGTTTTTCCGATAGGACTGAAATTCCAATCAAATCATCA
GGAGGATACCCTACCTAGCAGGTCATTTTTTAGACGGGGTGTATTTTCAA
GTTAACTTAAAAAACATTATTAGTAGAAATGTATCATTTTCATCTTCCAA
AAAAAGTAGAGATTCAGGCCTGGAAAAAAGTCTTAATTACGCATGCTTAC
ATAACAGTGAGTCTCTTTAATGTTAACAACATATTGTCAAGAGAATTAGT
GGTCACCATAAAATCACATTACGATGATTAAAAATTAATCACCAAATTAA
ACATGGCGAACGACATGAAACATTTTTTAATGTTGTCTGCCTAATTACAT
CAGCTGTCCCACGTTTTGCCAAAAAGTATTTTGCGTGTATTGAAAGAATC
GAACGACGGGGCTTTTCTCCAGTCAAAGCATTGAGGTAGGTTCGTCTTAC
AAATCCTGTCATTGTAACACGCATGCGTAATTTGTCGTCCTTTCAAACCA
CATCGTGTCATAAACAAAGCAGAATGAATTTGTAGGGGTGATGCAAGAAC
TTATGGTCGGGGTTGTTGACGGCAAAATATGAAATTTGTCGTTCTTTTTT
GTCATTCTTTATGAAATTTGTCGTCCTTTTTGTCTATTTTTAGCGATGCA
GGATAGACCACCTCATAGAGGACTTTAAAAATAGTATTTGTTAAAATATA
AATAATTCATAAAAATCCTAATTATTGATTTTCCCTAAGTCTCATTTTTC
CACGTTCACAATAAATAATGAAGAACCCATAGATAAGAAAATCACTGATT
TTTCAAAATAGGGAGGAAAGTGGGCGTGGTTATGTCTTGCTATGACAATG
ATAGGGAGTCTAAAGAAAAGTCACTGTTCTTTTGAGTAGCCCATTTTACC
CAAATATAATTAATATTCCGGCTTTAAAAACTGATTTTTATAGCAATAGA
CATATAATAATTTATAGAGAAAGGGCTGGAAAACAGTGATATACAATAAA
TCTTTATTTTTCGAAAATTGTTTGATAAGTTGATGTTTTGGAAACCGGTT
GTCCTTTGAGGACTCGACTCTGTTCGAATTTCAAGTCGAGATTGTTACAC
TGATATTATTTGTTTAGTCAAAATCTCAATATTATGTAATAAAATATACG
TTTCCATGAGCAGAAGATATTACGAACCCATTACTTTTAGGGGTCTCAAA
AAGATTTTGGTGAAAAGAGAAAAAATCGAAAAAATCAATTTTCATGGAAG
TAGAATATTTGGAATCACATAATTTTCACTATTCAACAAAGCTGATTTTT
ATTGGAATTGAGATTTTGTTACAAACAGTGATATTAGTACATCATTTAAA
GCACTGATTTAGGCTTATATCAAAAGAGCAACAAAACGACACTTTTTTTC
TTGTACTATCTATACTTAGTGATATTTGCTAATCTTCTTTGTGACTTGAT
AAAATGATCTGCTCACGCATCCCAGCTGGCACAAAACGTTGTTTCAACGT
TTAATTAACGTTATATTGACGTTATGAACATTAGATAAACGTTGAAACAA
CGTTGTGTGCTAGCTGGGATATTATGAAAAGTTCTTCGTTAATTATTTAA
AAGATTCATATAACCCAGACGGCACACACGTCAAAGCAACGTCCATGTGA
CATTCACAACGTCCAAATAACGTTATTTTAACGTTAAAACAACGTTGTGT
TCCAGTTGGGAATAATTTTGAATTTTTATGGTAATTTGAGAGAAAGCTGG
ATCTGATATTTGGTGAACATTTGTAGGATAGATATATAAGAAGTGGCTTT
AAAAAGCTTGGGAATTCCAGACTATGACTGAAAGCTTGAAAAATGGATTT
CTTCAATAGGAAGCGAAAGTTATCATTTGGTAATAATAAATCAAAACAAT
CTGAAAATAAAGACAAGGTAAAGAGATAAGTTGGTGACTGGGGCGGTGAA
AAGGGGTGGTGGGTGGGCGGCGATATACAAGGCGGGTGAGAGGGTGGAAC
TGTATACACTGAAAAGCAGGCAAAAGGGTGCGGTGGGCCGATACGTCCAT
ACACCCTGCGCAATAACCTTGATCCTTCTCTTTATATTTTTGAGAAGAAC
GATATCAAATGCTTGGTCGTCAAAATGCTAAGTTAAGTGACAATACACTT
TTTCGACCGTAGTCGCGCGGTCAGGCGCGTACCACTTTATTGTTAAATTT
ATACCACCCTAAACTCGATCCAATCCTTTTTTCTACACTTTTTTCTATTG
TATTTAGGTGCGAAAAAAGACTGGGACGGTTTTAGGGTGGTAAAACGTAC
AAAAAATGCCAATTGGCAGCTACGGCCGAAAAGGTGTACAGTGGAACCTC
TAATTAGCGGACACCATCGAGGAAATGGGTTAGTGTCCGCTAATTAAAGT
CTATTCATGATAAGTGTGCACTCTTTTTTCTTTTACCTATAACTTTTGAA
GGAATTCTTCAATCTTTATAAATTTGGTATCATTGAAAAGATATTGAAAT
AACAATTTGGAATAAAAAAATCTTTAAAAAATTCTAAAACTGAAGATGGA
GATGAAGAAGAAAAAAATGAAGATCTTGTAGAAAGGTACTATAACTTTCA
TTTTCACTGGAGAGATTTTTTGATCTTAGGAGATCATCACTGTGAAGAAA
TTTCATTAAAATATTTATTCAATATAAAGCTATGATACAAAGTTAATAAG
TGATTGACCCCAAAAAACAGCAAAAAACTGCAGAAAACAGCGTTTTTAGA
CGTCAATCAGCCTATAACTTTGTTTGATATCTTTTGACTGAATGATTATT
TTTCAGATTTTTTTTCACAGTGATGACGTTCGATGATCAAGGATTAACTT
CAATGAAAATGATAGTTATAGCACTTTTCTACAAGATCTTCATTTTTTCT
TCTTCATTTTCATCTTCATTTTTAGAATTTCTTTAAAGATCTTTTTATTT
CAAATTGTTCCACTCAGTAATATCTTTCCAATGATACCAAATTTATAAAG
ATTGAAGAATTCATTCAAAAGTTATAGGTAAAAGAAAAAAGAGTGCACAC
TTATCGTGAATAGACTTTAGAAGTGTCCGCCTTTTAGAAACTTTTGATCT
CGGAGCTCCAATTTTGAAATTAGGCCATCCCAGGGTGTCGAAAGTACAAA
ATTGGGGTCTAAAGTACTTATCTGCAGACACTAGGCCATAGAAGAGCAAG
AGAAAGGTTATTAAAACGCAACAATTTAGTTTTTAACAAATAAAAGAAAA
ATCAGTGATTTTTGATTTCTTTGGCTCACCTAAATTCGTTGAATGGGTCA
AGGGGAAAACTGGAAATTTGTAGAAATAATTTGAATAATAAGACTAATAA
GTGCTTGAAATAGAAATATCTAAAAACATTTCTTCGATTTTGGACGTCTG
TCACCCGTTTGATATTCAATGTCCGCTAATTGGAGAGCTAAAATAGGGAT
TTTGGCCATTTCGTGCGAAAAAATTTGTCCGCAAATCAGAGGGTCCGCTA
ATTGAGTGTCCGCCTTTTAGAAACTTTTTTATGAGGATTTGACTAGGAAA
CGGCCGGGGAAAATGAAATTGTCCACTAATCAGAGGTGACCGCCTTTTAG
AGTGCCCGTTAATTAGAGGTTTTACTGTATATAGTCGACTCAGCAGTTGA
AAACATGTGAAGTGTCATAGTGTTAGTTGATCTGTCAGTTTTAAAAGAAT
TCTTATTAATGAAACATTCTTTTATTATTATTCAGGGTTCAATCACGAAG
GCGCGGGTCGCGGTGTTCGGATGCGGACGAGTCGGAAAAACATCGATCAT
TAAACGATATTTATACGAAGAATTCGATCACAACTACTATGAAACAATCG
AGGACATTCACAAAAAAGTTGTATTCTGTAATAACCAATCGATTGAATTA
ACAGTACTCGACACAGCGGGTAATTATCAATTCCCAGCCATGCGTGAACT
AGCGATAAAACAGAGTAACGGCTTTATACTTGTTTACGCCATTGACAATG
TCCCTTCTTTCGAAGAAGCGATTCGTTTACGAGATATTATTGTATCAGTT
AAAAACAATGAAGATACCCCGATCCTATTAGTCGGTAATAAAACGGATGC
AGGCTTTCGGCGAGTACAAAGAGTCGAGGCTAGTGCCGCAATGAAAGATT
GGGGCTCTAAAGCACAACACATAGAGACATCAGCAAAAAATAATGAAAAT
ATCGATTTACTTTTTAACAGTCTAATAGCAATGATTGACGAACAGAATAA
TGAGCAATTAGAACTATCAACTTTTAAAGACGCAACTCGATATCGGTTCA
GCAGTATGCGACAATCTGTCCGTAACTCGACGAGGCGGGCGTCCGCTAAG
ACTTTATCATTCGTTCGCCGTGAGAAAAGTCAGACGCAACCAATGGTTAA
CGGCAGGAAGACACTACAAAGTATTTCGTAG

Coding sequence (CDS) from alignment at sc0000267_pilon:158555..165135-

>XLOC_033517 ID=XLOC_033517|Name=XLOC_033517|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1614bp|location=Sequence derived from alignment at sc0000267_pilon:158555..165135- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGCCAATCAATACCATACAGAAATTCAATCTCATATGAAAGCGAAAG
GAAGGAGCGTGAAAAGGAAGTCATGAGACAAATCAAAGAAAAGATCATTG
CATCACGACAGATGAGCCAATCAATACCATACAGAAATTCAATCTCATAT
GAAAGCGAAAGGAAGGAGCGTGAAAAGGAAGTCATGAGACAAATCAAAGA
AAAGATCATTGCATCACGACAGGGTTCAATCACGAAGGCGCGGGTCGCGG
TGTTCGGATGCGGACGAGTCGGAAAAACATCGATCATTAAACGATATTTA
TACGAAGAATTCGATCACAACTACTATGAAACAATCGAGGACATTCACAA
AAAAGTTGTATTCTGTAATAACCAATCGATTGAATTAACAGTACTCGACA
CAGCGGGTAATTATCAATTCCCAGCCATGCGTGAACTAGCGATAAAACAG
AGTAACGGCTTTATACTTGTTTACGCCATTGACAATGTCCCTTCTTTCGA
AGAAGCGATTCGTTTACGAGATATTATTGTATCAGTTAAAAACAATGAAG
ATACCCCGATCCTATTAGTCGGTAATAAAACGGATGCAGGCTTTCGGCGA
GTACAAAGAGTCGAGGCTAGTGCCGCAATGAAAGATTGGGGCTCTAAAGC
ACAACACATAGAGACATCAGCAAAAAATAATGAAAATATCGATTTACTTT
TTAACAGTCTAATAGCAATGATTGACGAACAGAATAATGAGCAATTAGAA
CTATCAACTTTTAAAGACGCAACTCGATATCGGTTCAGCAGTATGCGACA
ATCTGTCCGTAACTCGACGAGGCGGGCGTCCGCTAAGACTTTATCATTCG
TTCGCCGTGAGAAAAGTCAGACGCAACCAATGGTTAACGGCAGGAAGACA
CTACAAAGTATTTCGTAGGGTTCAATCACGAAGGCGCGGGTCGCGGTGTT
CGGATGCGGACGAGTCGGAAAAACATCGATCATTAAACGATATTTATACG
AAGAATTCGATCACAACTACTATGAAACAATCGAGGACATTCACAAAAAA
GTTGTATTCTGTAATAACCAATCGATTGAATTAACAGTACTCGACACAGC
GGGTAATTATCAATTCCCAGCCATGCGTGAACTAGCGATAAAACAGAGTA
ACGGCTTTATACTTGTTTACGCCATTGACAATGTCCCTTCTTTCGAAGAA
GCGATTCGTTTACGAGATATTATTGTATCAGTTAAAAACAATGAAGATAC
CCCGATCCTATTAGTCGGTAATAAAACGGATGCAGGCTTTCGGCGAGTAC
AAAGAGTCGAGGCTAGTGCCGCAATGAAAGATTGGGGCTCTAAAGCACAA
CACATAGAGACATCAGCAAAAAATAATGAAAATATCGATTTACTTTTTAA
CAGTCTAATAGCAATGATTGACGAACAGAATAATGAGCAATTAGAACTAT
CAACTTTTAAAGACGCAACTCGATATCGGTTCAGCAGTATGCGACAATCT
GTCCGTAACTCGACGAGGCGGGCGTCCGCTAAGACTTTATCATTCGTTCG
CCGTGAGAAAAGTCAGACGCAACCAATGGTTAACGGCAGGAAGACACTAC
AAAGTATTTCGTAG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_033517	XLOC_033517-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000267_pilon	genome	sc0000267_pilon:158555..165135 -

Properties


Property Name	Value
Aaloc	112-807:697
Aaloc	1-111:6582

You are here

XLOC_033517 (mRNA) -