|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000078_pilon:149623..155662+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_032979 ID=XLOC_032979|Name=XLOC_032979|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6040bp|location=Sequence derived from alignment at sc0000078_pilon:149623..155662+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAACCTGAAACAGTCACTATGGTCAGAGGTGGAAGCAGTTTATTAGT
GAGAGGTATGTATAGGGGTTGTATTTTGGGGGATGTTTTGCTGGGGGCAG
Atgttagcaactccagaagatttttcaaattttaatttgtttttcaaaat
ctatcctatcttgtagagctttgaaaaggaaagaaaatgaggggtcatag
gcctccagaggataagtggttgtaaagatattcaaattttagtgtcaaaa
atttgactaaaaatgtcaaaaaaaaggttaggttaggatccagactccac
ctcaatttgcaaaagttgctagcaaaattacaccgtgaatggtcctaaat
ccagtcagggcctccttggtcttttataatatttagttcggatagaataa
aaacatacctgatcaacacaaccaaaccttttgtcttgcgtttactcctt
cgcaacaactttcgtttttgtttatgtaggttttaaaatccacaagtccA
GACGATCtctctcaatcgaacagaatcgacgatcgaaccagtcgaaccaa
atcgaacgcaatcgacagattgaaattcgattgtcgaacgcaatagacct
tttcgcctttccatccgccatcttgaattgtatgcaaaaatagaggaaca
aaaaagccgtggttggatttaattagttggaaaatatgcaaaacatatgc
aattttacacaaagattaaaaatacAATCAAAGCATCTTATagagaaata
ttataatcattagaacaataaaagatggaatttcttaatccaaaaagaaa
tatttacagaacaacaaaagccttttagaaatttgttcttaaagacattg
catattgtgTTTTCCtgtcattaaaaaattccaccaagacggagtacaca
catcaaactttcaaaacacgcaaactgaaagcatgattatgacgtcacac
attcagaGGGTTCAgaacaatgttttgatttgatcgtctgacggttctat
tcccaggagaataatttaccgtcagccgaataaggatatttttgtacctt
cgcggatgatttttcagcttgagtttatgtctattgttatggttttttga
agtgcttgttctaagagatgagcgaatttgattatttctagttttcaaaa
gaagcaaatctaatctttcttctacaagattacactttaatataatgcca
attatgcatgtaagttttatattaatactttctttttgcacatgttttgc
atactttctaagggaatttcaccacggcaatttggccaccataatttttg
catacaattcaatatggcggatggaaaggcgaaaaggtctatcaaatctc
aatcgaacgtcaaaattatgggtaatattcgattggttcgattgttgttt
gactggttcgattgtcgttCGACTGCATTCGATTGTTCGGGTgacacgtg
cgtttggtttgggaacgcgaaacacgaacacgaactacccatgtctatAG
ACccgtttcaatgttttgatttttcgcgTTTGTATGCGCATGTGCCAAAA
TAGTTACGGTTTTTCAGAGGCAGAAAACACGAAGCGCTCACTGGAAAAAg
gcagttttgattttatttttcaaaatctcttcATCAGAATTTCATGATAT
TTTATAGTATAAGAATCCTATACAGTTCTTAgataacatactaaaatttc
tattcaaaattccttctagatcctGAGAAAATTGACATAAACTGCGTGCC
TCCAGCTAATGTTGTTGTCTTTTTTGCCTCTGTAAGTCGGGCCGTTTTGC
GGGTCGTAAGGAGCAGATGTAAACATGTGACGTCACATGAAACGGGTCta
tacttttcaatatatctccagaactactgtaacagattttttgaaattct
gcaaaaaggtctaagttcctgaatagttttactatgttctgtgaaaaaat
cataaccatcagtagcaactccagaaaatttttcaaatttcaattttttt
tcaaaacctatcctatcttgtaaagctttaaaaaaggaagaaaatgaggg
gtcataggtctcagaggataagtggttgtaaagatattcaaattttagtg
tcaaaaatttgactaaatgtcaaaaaaaaggttaggaaaatagcttggaa
aaattcgaaaaatgtgtcaaaaaagaaaaaaaagaaattttccagtcatg
cttcttcaattttgcatatctcttttttctagtgtagctagagacctgaa
atttggagggagaattctttgatggtgttagaatattattatataaaaat
atttgtaagatatttagtatatttatcaaaataacgaaagatatatattt
ttttgaaaaaagaagacattgcattgttttatttttgtttttgaagaaaa
gtagcttggaaaaggttgaaatgagtcaaaaaaggtggtaggacccattt
tcaaggggcctcttgAAATGGAGtcgaacaaaaacttatgagtaaagaat
aagtttttctgaaaggagaaaccccaaataaaaagaaaatccatttcggc
agaaataaaaacttttttttgggacattcccatgcaaaagaagcaaaaaa
gtgaaaaaaactacatgaaaatgaaagaactaaaattggcgaatgtgatt
tttgaattcctcgccctttttctgataaacatacaaagtttcagcctcca
aatacattttcctccgtttccagacacatttctTCATCGAtagttgcatt
ttttttttctcccgtcggcaaacaatttgcaaaatgttgcaaaacgttcg
gcattttaccaatttgccgtctagcccgtgtccacagtgttatatgccgc
tggaaagctaagatcacaggctttcatttagtaaaaaccagAACGCTTTA
GCATGTATACATAGAAAAAGgttcgaagggttcaaagttcacggaagaat
gaaacatttggtttgacgtcagcgaaagttgcatgacttctggagtcgct
accatcagtcaaatactcgttcatctatttaagattgaagacaaaaattt
gcgaagaaagataaaccttgagcacaaaaaatgcttttttaaacactttt
ttccaccgaaaaacaaatgacttttacagacttaccttccccaaacattg
aagaagcctcttctaattaaagtaaatgagatagcAACAAAGCAACAGAC
GTGCTTTTcttgccgccattttgttttagaataagaattctagagaattc
cattcggttCCAGCCCCGCGGTCTTTtttatccaatcagatcgcgcgatt
tcactttcgctttctctagtctaataagactgcgggatttgagtcatgtg
acatctctattaaaaaacccgcgcgaattaaaatagaaatacagggggtc
acactactggctacaggaactgaaagcaagcaattaaggccaatatgttt
ggtttttctgaaggacaaaaggtataggaagctttactgaaatagggata
aggctgggacaatctatttaaaagatatggacaaaaaaaaggcacttttt
tgggtgataattaagattttacttagaaactttaattttcttacccccgt
ctcggccccccctgatatgagcaagggaacaaTGTTGGCCATCCCTACTG
acaatttcagatcaaaacaaacaaggaattaattcctgtagctcaaagaa
aattggaaaaagctggtttttgactgtttctgatcctaaagtgctatttt
ttggtaaaagctatgcaatttatgtttggatttatagaaagcttacccat
tcattgtcaatacattttttatttgaaagtaatctcttcatggaataaaa
agatatcttcaaatcttgtagggtcatttttcaaagaaaatttgccaaat
tcgattttcgcatttcgccattttaccctacgcaaacgcacgtggtgaaa
caaggcatgtcccaaatatattttgtgtGACGCGCACCACTTCCCATTAT
TCCTTAActctcatatatagctcaaaagaatcgaATCAACGAGAAGGGTC
AGCTTTTTAACAAagattagtctctctaagggtcggatcctaatcgaacg
caatcgaacacaatcgaacgcaatcaaatctgaaaattgcggtaatattc
gattgagattcgatcacgttcgacaatcgaatttcaatcggtcgattgtg
ttcgatttggttcgactggttcgatcgtcgattatgttttgaaaaagttg
ctaCAAGCCTATTTTGTAGGCGGGTTTGCGCTATGGGCCCGGGGGTCCGG
GGGACCCTTAAAAAGGGTCCCCcatcaaaaatttcactttcttaCCTGTT
TTTAGGATATTTAGCAACTTTTGTATATGGtccataaaaaaattatgtca
taGTCCCTCCCctagatttaggaccactcacggtactgaGTCGCTCTATA
AAGTTTGGGAGGCCAAAAATCAACAGAGTaaaaaaaTCTCCTTTAAAGGg
gcattaaagtagtaaaatgtaaacattgcgcgagccacgtgtcattaaag
agaacaattaaaatcacgtgtccaaaacaaacttgtaaaacaattgaaca
atcaaaattagccatatttggtttgatttttttattttgacatgtgacat
ttgttttgattttgtatccgctgcatacagtttgtttacaaatttcacaa
gtactgttatgtccctttaactaAGGTAAAGATATCTCCTAATGAAGAGA
ACTTCTCTTAGATAGAGTATAATCCCGTCTGTCTGCCCACCCAGTTAGGA
GGGGCTGATCCTATTTTGCAACCAAATGTCCTACAACCAAAAACCCATCA
ACAAAAAGATATCttttgaggttgggaatggGTCCTGCAGAGATGAAAAG
AATTTGACAAGGCATTTGTTTGGCAAACTCATAAACTCTAATTTTGTTCT
TCCCTTTTGTCTTCttatttaaatttctttcttttaggaAAGGAAAGATG
CCCTGGAGATGGGATGGAAGATCACACCTTAGCACAACACATCAAAACTG
TCTCAACTTCATACAAAAACGTCAACAAATCCAAAATTCTAAACCCTACA
CCAGCAATTgttaagaaaatcaacttcaatGATTCTCAACAAAACTTAAC
AACGTCTGGATCTGATTCTTCcatttacagtaatatattcACCACGCCTG
ACCAGACACTCTCAGTACCAACCAGCCACGATGAAACGCTTCAAAACTCC
TTTGCTGAGTTGAGTATTACTAATGAAACGTTGAAGACACAGTTAAGTTT
ATATCAACAACACAATGACCAACTGACTGAACAGAAAATGAAGTTATCAC
AACAGCTCGGTATACAAACGCaggtttgttaaaaaaatgttcaatggcca
aaatataaagaactagtttttaagactttgcagactctaaaacacccaat
ttcttaggaagttacacgaaaatactcacaaaatgctgaaaataagaaca
tttgaaggctaaCTAAAATTTTGGACGTTCCAATAAAAAATCGAGTGTTC
CATGATATAATTTGACCGCAATGAATACACAAAAGTATTTGACTTTTCTT
CTCTGCCATATACCACCTGCTATCCAATCAGCTATCCTTTGAAAGTGGCG
TGATGTCAGAAGTAGTACTTGCTGAAGTACTGACAGTTCATTTTTCTATG
CGACAGATTGCGAGTAGGACCGGTTATTCTGCTTCCCAAGCAAATTTCTT
GAAAACCCCATATTATACAATgtataaaaattgtaaaaatttgtcaaaCT
CTCTTAAAGAGCTGTTCAAAATAGTCGTTTTATCTATTTCTCGAGAAAGA
TGTATTATTTGTCTATGGATATTAAATGACATTGATGGCATGTATTGTCT
TTGAGTGTGTACGTTACGTTCTGTAATTAGATTTTGATAACAATTCTTTA
AAAttgtgacaatttttttcttgttagGTTAACAATGAAGTAAAGAGATT
ATTAGTTGCCTCCATTGGTGAAGATTTACAACAAAAGTAA Coding sequence (CDS) from alignment at sc0000078_pilon:149623..155662+ >XLOC_032979 ID=XLOC_032979|Name=XLOC_032979|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0000078_pilon:149623..155662+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAACCTGAAACAGTCACTATGGTCAGAGGTGGAAGCAGTTTATTAGT
GAGAGATGGAACCTGAAACAGTCACTATGGTCAGAGGTGGAAGCAGTTTA
TTAGTGAGAGgaAAGGAAAGATGCCCTGGAGATGGGATGGAAGATCACAC
CTTAGCACAACACATCAAAACTGTCTCAACTTCATACAAAAACGTCAACA
AATCCAAAATTCTAAACCCTACACCAGCAATTgttaagaaaatcaacttc
aatGATTCTCAACAAAACTTAACAACGTCTGGATCTGATTCTTCcattta
cagtaatatattcACCACGCCTGACCAGACACTCTCAGTACCAACCAGCC
ACGATGAAACGCTTCAAAACTCCTTTGCTGAGTTGAGTATTACTAATGAA
ACGTTGAAGACACAGTTAAGTTTATATCAACAACACAATGACCAACTGAC
TGAACAGAAAATGAAGTTATCACAACAGCTCGGTATACAAACGCaggaAA
GGAAAGATGCCCTGGAGATGGGATGGAAGATCACACCTTAGCACAACACA
TCAAAACTGTCTCAACTTCATACAAAAACGTCAACAAATCCAAAATTCTA
AACCCTACACCAGCAATTgttaagaaaatcaacttcaatGATTCTCAACA
AAACTTAACAACGTCTGGATCTGATTCTTCcatttacagtaatatattcA
CCACGCCTGACCAGACACTCTCAGTACCAACCAGCCACGATGAAACGCTT
CAAAACTCCTTTGCTGAGTTGAGTATTACTAATGAAACGTTGAAGACACA
GTTAAGTTTATATCAACAACACAATGACCAACTGACTGAACAGAAAATGA
AGTTATCACAACAGCTCGGTATACAAACGCagGTTAACAATGAAGTAAAG
AGATTATTAGTTGCCTCCATTGGTGAAGATTTACAACAAAAGTAAGTTAA
CAATGAAGTAAAGAGATTATTAGTTGCCTCCATTGGTGAAGATTTACAAC
AAAAGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078_pilon | genome | sc0000078_pilon:149623..155662 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 442-504:5978 |
| Aaloc | 58-441:4990 |
| Aaloc | 1-54:1 |
|
