XLOC_032977 (mRNA) -

Overview


Name	XLOC_032977
Unique Name	XLOC_032977
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000078_pilon:120816..126265+
coding sequence from alignment at sc0000078_pilon:120816..126265+

mRNA from alignment at sc0000078_pilon:120816..126265+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_032977 ID=XLOC_032977|Name=XLOC_032977|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5450bp|location=Sequence derived from alignment at sc0000078_pilon:120816..126265+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTCACTCCTGGATGTCGTGTCCACCGTAAGTATTTTTTGCACACCA
CCTGTCTAAACCAGTTTCGCATTTGAGCTTGATTCCTTTGGCTGCCATTA
TTTCAATTCGCAACCTGATTCCGATATTTTGACTCACTGGAATGATAGAT
CAGGCAGGGGGTGTTTATACCTGTGGATAgatctatgaaaaaaaatttca
actatAACTGGACTTGCTTTGCTTTATGCCATATCATATACTTGCATTTG
AAGTTTATACTTCTCATTCTTAAACAatcttttaaaggttttcacGGGGT
CTACACTCAGCTGAAGCAGCTATCTATGAACTTAGTGGGACATAGGAAGC
AATGGGGCTCGGTACCGGGAACCCATGGTTTTAACTGGCACTTAGAACAC
TTGATCGAAGCTGCTCTTTATTATTCGCAAATTAATAAATCTTCAAATTA
ACTTATtcataatgggcttttccaaaggaatcgtgcaccccctgttgaag
aggtccatttccgttccaagggggtaaggtttgaattGCAGTAGAATTCC
ATAAGGTTAGaagaaaatccgtcaaaaataagcggaattccaaggggata
atgattgaaaatttgtaaaaattcgaaattccagaggggtatgatcctat
aattgcctggaattccaagggggtaggtcacaaaaggttggacctcctca
acagggggtgcacggtttttttctggaaaagcccaatcaaaGAATGAACT
CCCGTAATACAGGACCGGATCTAAGAGGAtccaaaatttacaaaagagAG
TCTCCATTTCCTTATAAGGATTTATTTTACACTTTGTCATGAATTTTGAG
CCATCCTCCTTTCTTAGACCCATCACTCAAACATCCAAgggttttaaatt
ttcgagttttcTAAAATTCAACTTCACTCAATCCATTCAACAGGTCATTC
AATCCATCGATTGGACGTGGTGGCATCATTGGTGCCGTCTGTGAAGCTGA
ATGGGGAACCAGTAAGCATATTTTAATCTAGAAGCCGGTGAATTATGACT
GAGTCCCTCAGGGCAATTGATTTGAAACGCCCCAAAATAAGACCTTCAAA
ATGGAACACTTGCAGTGCAGAGAAGAATTAGCCAaaattgagtaaatttg
ggtgaaaaatcGACCCATACGCTGtattttcttggaaatttttgtAGCAA
AAATGCTAACACTTCGTTTTACTTCAATATTCTTAAAGTGAACTTTCTCT
CATTTCAACCATTATAGTGTACTTTGCGATGCCTGTAAAACGCAACAATT
ATAGATTTTCTTAACCTAATTCATTTAATAGCTCCGGTGACAGAGGTCGA
AGCTGGTGATCGATTGAAAGTCGGATGGGTTTCCAACAACCACGGTGGTG
GTTACGCAAGAATCTCTTTAGTACCATGGGGCCAAAGGAAAAGTGCACAA
GCCTACAAAGATAACGTGATGAAATTTGCTTGTTATGGACATGACGAAAG
ACCAGGCAAATTTCAATACGGAGATTGTAAACATCCATGTAATGGAAGAC
CTGGCTGTGAATACCAAGCTGGTAGGCTCTAGTTACACTTCTAACTGGTA
TAAGTCCCGGAAGGGATCAGTTAGACAGATTTGGTATTGGAACAGGCCAC
TGGTCagatcatagtataagaaagccgtgGCTTTCTTATACCATGGTCAA
ATTAACTCtgttaggctctgaagatatctggaaGGAtcccaaatttaatt
tttaagatgtgtatctgacagggtcgatttTTTAGTTATTTTCGAACAAT
TTTCAGGGTAAAATTTACCAagcattcatatctgacagggatCACTTTTC
AAAATCCAGTGGCACGTCTGCCGTCAAGGACAGTGCCCCCTCTGGGATAA
CGTTCTTCATAATTTTGGTGAACCTCGAATTAAAGTCACGGTGTGCCTGT
CGGGTTTTCTCTTCTATCCATTTTCAGTCTGAAATTGATACCCCAAACAA
ACTACTTGTCTTATACAAAAGATGGAATTCATTAATTCATTGATTTTCAG
AAACCATTCAAAAAGCCCCAGAATATACCTCCGAATGATTTAGATTAGCT
ATAAAGTTGAAGAAATACATTAAGCAGAAGCAAGAATCTAATTCGAAAAT
CCCTTAGCTATTGCCTtaaccaaagatttattatacactggataaacgac
tcataaaacgatggagagcgaccattgtattttcattgtttcagaaaaca
attgatgttctagctttgtccgcaaaggacaactgtcatggcggctcgaa
tatgtctgatttttaaaaatgtttatcagtcttatttttaaaaagttctc
tagctctttttctttgtacatttgcagaacaaaaagtttgaaagtaaggc
tagcattccgagctggatacatttgtgaaatataatgtgagaaaaacatc
actagacaagaaattcagacaaagtgcttatagtgacacgaaattttcaa
ttggaaatatctttccaagactgtccccagaagagctgaaattaacatac
ataagacttgagtgtcttggctcctctgtggtatgaaaatcctttggagg
cacgtggtggcaaagtggtttttttgaggttgaagtttgaaaatttccgg
tgtcaacatttaagtttcttttacacaacacgtcttttgcatctttctca
cagcttgaaacgtcataacggcttataattagcaattaagtgaaagaatc
tgactctcacatgAAGGTTTTAAGTCTCTCTTGGGAATTGGATGaatgat
tttcgataagaaatgcaataaaaatgcttcgaaaaatcatttattgaggg
aaggagagtgaacaataatatcattactgcggacatagctagtacacgag
aaatcggcaaaaatctgttacttgtatatccagtgtataataaatccttg
ccttaactttttgaagaagaaaaacccAATGAAATTACAAAACAACATAA
AGATTTTTCCTACTATAAACATTGCATTGCATAAGTTTCACTAATCCAAT
ATtagcaagaaaaagaaaaaggattGTGAAATCGATAAGCTAAGCTTGat
tatctttttatcaaaacttAATGCCTGAGCTCAACATATTAAGCAAGAAG
CCATCTATGACGTACGGAATCTAtgcacagatctgtaaagcccgaagggc
tagatttgcggcttgtatcgaaaagtgaagcctatgtttggaaggatttc
ctaccaaagtcacgtgactaaaaaatgcaatttcaccggtttgagagatg
tgaaatagagtttgccgcctactttttttgatctcgcgctccgaaaacaa
ttaaaatgctagatcctatccatcggcacgaaatttaaaaagtcaaattt
ttgcttcacttttttttgctggagaaagcttaaagttgcctatctagtcc
ttcgggttttacagatatctgtgaatCTATGTCGTGAGTTTTTCGCAAGC
TAGCGCCCAAATCTCAAGGCTAACTCTGTCTCGTGAAATTTGACCTGTAT
GCTGTAGCTTGGGGAGCGGATCTATACCGCGAAATTCTCCAATCTCACGT
AATAGAAATTGATAAGCATGattaatatgaaaaaaaaacaagcatggaat
caaatactaaaatggctaattgaccaaatttgaccaaaattctaTCATCC
CCTTTTATTTTGATGAAGTCTTCCTTTGAACAGTTTTATAACATAGCGGA
ACATCTTCTTGCCCTTAGAGCATTTTGAATTTAGGTCACATGGGTTTGAA
AAAAGGGAGACAATTAATCATATCACTCTGAATGGTCACTTTCTACTAAC
TGAGACCACGTTACACTCTACGGtaccgtttcgctccgaaaggaaatgaa
gccattatattggttaaattcaagttttacgtcacttctaaccaatagta
TGGCTTCATTTCATTTCGGAGGAAAGCGGAACCGTTACGTGTGAACATCT
GATAAACACGTATTTTAAACCTTACGTAATACACACGTAACATCAATTAT
ATCTTACGCTTTTTCTAACAGACCCAGAAGATGTTGAGCGTTTCGACACC
ACTATTGGGATTCCAACCAACCTTGCTGATGGTTATTATTCACTCCAAGT
CTCAATGTTGGTTGGTAATGGTGGTGTCTATAACAGCTGTGGTAAAATAA
AGGTCACCGGTGGAAACCCTTCTTACAACTGTTGGTCAAGTAACAGACCA
GTGACTAATAAATGTTTAAGATCTGGTGGACCAGCAAGATCAGTTATCGA
ATCAGGTTGGTGTAATTATTTTCCACATGCTTATTATCATGAGAGCAACA
CTTTAGAAAAACATAAGAAAgcctacccagctggcacacaacgttgtttc
aacgtttatctaacgttcacaaggtctatatataacgttagatgaacgtt
aaaacaacgttgtgtgccagctgggtaagcgGTGTGAAAAAGGCCCAGCA
ATGTTTTGTCAGTTTTGTCATATTTTCGAAGCAGAGTTTCCATTTTAACT
TCGTTTTCAACTTGAGTACCCAAGAATTGACATTTCGCTGCGCGCCTTTT
TCTCCTTAATATTACATGAAATCCAAAACatctattttttttgttttatt
tcttatGGTTGTAATATAAAAATAGCTTCTCACATAAATATTTTCTACTT
TTAGGAACGAAACGTGGCGATTTTTGTTACGGTCTTGATGGCTCCATTGG
AACCGTCGATGATAACATTTCAGACGTCCCCATCAATGTGGAATGTGACC
CCCGTGTTGCGTGCAGCCAATCAACAAACACTGCTCTATGTTACCGTGAT
TTCCCTTCAATGGCTAAAATCATGGTGagatattttttcgatttttcgat
tttttgataaAGGATAAAGGAAATTCTAATTTGGTTTTTATATATTATGA
CCCTAATACCCATGTGTCACAAACCCGATAGAACCCCGCAGCTTAACTGG
AAAATTGGGCCAAAATTTCATCCACGTTTGGAAAAAGTACCctataattt
cagccccactgggaaattgactttgattttatcctcatTTGAAGTTCTAT
GTGCAAAATATTGCACATCCAAAACCATCGCCATTGGATATTTTAAagct
tcccagctggcacacaacgttgttttaacgttaatctaacgttatatgga
cgttgtgaacgttagataaacgttgacacaacgttgcgtgccagctgggt
ttggAACAATATTGTTTCTATCCCAATTGTGTGATCTCGATATGATTATT
ATTCTATAGGTGTaggaaaaggttccaccgggatTCTGAGACTGGGGTGT
CCTAATGTTTGAAATTATCTTTATTTTATAGACTGCCTCAAGAAATCCCC
GTCAACCAAATTGTAGATCCTACAACACATTACCCGTCATctccaaataa

Coding sequence (CDS) from alignment at sc0000078_pilon:120816..126265+

>XLOC_032977 ID=XLOC_032977|Name=XLOC_032977|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000078_pilon:120816..126265+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTCACTCCTGGATGTCGTGTCCACCATGGCTCACTCCTGGATGTCG
TGTCCACCGTCATTCAATCCATCGATTGGACGTGGTGGCATCATTGGTGC
CGTCTGTGAAGCTGAATGGGGAACCAGTCATTCAATCCATCGATTGGACG
TGGTGGCATCATTGGTGCCGTCTGTGAAGCTGAATGGGGAACCACTCCGG
TGACAGAGGTCGAAGCTGGTGATCGATTGAAAGTCGGATGGGTTTCCAAC
AACCACGGTGGTGGTTACGCAAGAATCTCTTTAGTACCATGGGGCCAAAG
GAAAAGTGCACAAGCCTACAAAGATAACGTGATGAAATTTGCTTGTTATG
GACATGACGAAAGACCAGGCAAATTTCAATACGGAGATTGTAAACATCCA
TGTAATGGAAGACCTGGCTGTGAATACCAAGCTGCTCCGGTGACAGAGGT
CGAAGCTGGTGATCGATTGAAAGTCGGATGGGTTTCCAACAACCACGGTG
GTGGTTACGCAAGAATCTCTTTAGTACCATGGGGCCAAAGGAAAAGTGCA
CAAGCCTACAAAGATAACGTGATGAAATTTGCTTGTTATGGACATGACGA
AAGACCAGGCAAATTTCAATACGGAGATTGTAAACATCCATGTAATGGAA
GACCTGGCTGTGAATACCAAGCTGACCCAGAAGATGTTGAGCGTTTCGAC
ACCACTATTGGGATTCCAACCAACCTTGCTGATGGTTATTATTCACTCCA
AGTCTCAATGTTGGTTGGTAATGGTGGTGTCTATAACAGCTGTGGTAAAA
TAAAGGTCACCGGTGGAAACCCTTCTTACAACTGTTGGTCAAGTAACAGA
CCAGTGACTAATAAATGTTTAAGATCTGGTGGACCAGCAAGATCAGTTAT
CGAATCAGACCCAGAAGATGTTGAGCGTTTCGACACCACTATTGGGATTC
CAACCAACCTTGCTGATGGTTATTATTCACTCCAAGTCTCAATGTTGGTT
GGTAATGGTGGTGTCTATAACAGCTGTGGTAAAATAAAGGTCACCGGTGG
AAACCCTTCTTACAACTGTTGGTCAAGTAACAGACCAGTGACTAATAAAT
GTTTAAGATCTGGTGGACCAGCAAGATCAGTTATCGAATCAGGAACGAAA
CGTGGCGATTTTTGTTACGGTCTTGATGGCTCCATTGGAACCGTCGATGA
TAACATTTCAGACGTCCCCATCAATGTGGAATGTGACCCCCGTGTTGCGT
GCAGCCAATCAACAAACACTGCTCTATGTTACCGTGATTTCCCTTCAATG
GCTAAAATCATGGAACGAAACGTGGCGATTTTTGTTACGGTCTTGATGGC
TCCATTGGAACCGTCGATGATAACATTTCAGACGTCCCCATCAATGTGGA
ATGTGACCCCCGTGTTGCGTGCAGCCAATCAACAAACACTGCTCTATGTT
ACCGTGATTTCCCTTCAATGGCTAAAATCATGACTGCCTCAAGAAATCCC
CGTCAACCAAATTGTAGATCCTACAACACATTACCCGTCATctccaaata
aACTGCCTCAAGAAATCCCCGTCAACCAAATTGTAGATCCTACAACACAT
TACCCGTCATctccaaataa

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_032977	XLOC_032977-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000078_pilon	genome	sc0000078_pilon:120816..126265 +

Properties


Property Name	Value
Aaloc	742-810:5382
Aaloc	574-741:4707
Aaloc	340-570:4074
Aaloc	100-336:1334
Aaloc	31-96:945
Aaloc	1-27:1

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XLOC_032977 (mRNA) -