XLOC_031730 (mRNA) -

Overview


Name	XLOC_031730
Unique Name	XLOC_031730
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000057_pilon:1296889..1300110-
coding sequence from alignment at sc0000057_pilon:1296889..1300110-

mRNA from alignment at sc0000057_pilon:1296889..1300110-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_031730 ID=XLOC_031730|Name=XLOC_031730|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3222bp|location=Sequence derived from alignment at sc0000057_pilon:1296889..1300110- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTCATGTTGGAAAATTATGTTGTCCTTTCACCAAGAGGAAACGGGAA
GCCATTCTTCTCACTTATATCTTCAAGACCTGTCCAGCAAATTTCACAAA
GCGAACGATTACAAGTTAATAAATTGATATGCCACGTGCAAGATGCTTTA
CTGGAGTTTCAGGACGCTACAATGAAATTAAACTTTTTAAAAACTAAACA
CCATATGGTTACTTCAGACCGTGATCAAGTTTTACAGCTCATGTACGGAA
TTTCACAACAATTCACCTCCATCAAATTAAACATTCGGACGATGTTATCG
AGTCTGGTTCGAAACGGTTATTCAGTATGTGATGGTATTCAATTTCAAAA
TGTCACAGATATGGATAATTTAATGTTACAAAAATACTTAACGAACGGTC
CCCAACGGATTACTTTGAACCCAAACACTTTACAACTTCAGGAGGGTAGA
GATCAACAAATGCAGATTGACCAACAGCTCCCGTCACCACCCACAGTTAT
GTCAAACCATCAACCAAGATATAATCATGCGGCACCATCTTCGCCACCAA
ATGTTCAAAATCAAACTTCTTTCCACCAAGAGCGAGCCAATAGTCATCAC
CCACTCCCCAATTCATACGGTGAACAATCTCAAGTCTCGCCAACTCAACA
AACATTCACAAACCAATCAAATGTCCAACACAAAACCTCTTCAAATCCCC
TCGAAAACAACCAACAAGCTTCTCATTCAAACTATCCAAACGGAGTGCCC
CAACAAATTCAACAACAGCCAACATCATCGTTAGAGCATCAACTGAACTT
CCATCAATACAAACCCAACCAAAATGACGGAATCTCACATATCAATAACG
AGAGTCGCAAAGCTGAAAACGAACTTGAGAATCAACCAAAAGGTAAAGAT
GAATGCCGGACAGCATGCGATTCTCAACCACCAAGAAACAATCACCAAGA
ACAAGATTCTCGACCAGCATCTACAGAAAGTTCGACCAGTACTTTCTCTA
CAGAAGATTTGGACGAGTTTGATAGATTAGTGGAAGACTATGTCGCGAAA
AATATCGATAAACTTTTGAGGTATGATGACCCAGATTACATTCAAATCAA
AAAAGAGAAACTTGAAAATGAAAATAACGAACACTCATGCTGTAGTTATG
AACAGCAACAAACTGCAAATTCACATTCTCCAACATCGATCTTACCAGAA
CTGCGAAACACCCAACATCCAGAAGATCCAACCACTACAAAAATACCCCC
ACAAATACCATCCTCGCCATCGACAGCTGTACCCGAAAGAGAATCAACTT
CACCACCCGAATCTTCCAACAACCAACAGCTTCCATATCAAAACCAGATA
CCTTCAATACCTTCAAAATTGGCAGCAAAATCACAATCTCCAAGAGTGAT
TCCAAATTATCAAGGAAAATTTTCGACCTCTACTGTTTTCGAGTTTCCTC
CAAGGATGCCAGCATTACCTCAATATTCCCCCAAACCTACCAAATCATCA
CCAAAGACTATCGATTCTCCAAGCTCCTTAAAGAGACTTTCTAAACCTGA
ATCGTCCACAATCAAATACATCGCAAAAGAATCTCCAAAACCAACCAGTA
AGCCTGAAAATAAACCTTCCAAAACCCAATTGAATGAAGACGAACCAAAT
GAACAGAAAACCAATAAAACTTCACCGAATGCTTCTGTTAAACAGGAAAT
CGTATCAAAAGTTCGCTCGACATTCCTTTCACATCTCGTCAAATCGAAAG
TTCCTCAATCAACAAAAGCAATCAAGTCCGAAATTGCACCAAAGCCAGAT
TCGTCAACTTCATCGGAACCTGATTCTGAACGCAACGACGCTATTAAAAC
AACCCCATCTAAAAACGATACACAAGAACAACTTAACCGTTCCATCCATC
CGACATCCAAGCATGAAAAACGTAAACCCAAGGTAGAAAAGAATCATTCT
TCACCAGTCTCCAAACCACCGAGTAGCGACGAAGACGTTACCATCACCAA
AGTCCGGTACATGGCTCGCCGGACTCCATCAAATTGCGTCACCAAAGAAC
TTCGATCATTTCAAGCGATCAAGAAAGAAGTCAAAGATGACGTCATCCTT
GAGAAAAATGATGTCATTGACGATAAAACTAATGGGAAATCAGCGAGCAA
TATCGTTGATGGTCAGAAGTCTATAAATGTAGAGAAAAAGGAGAAAGCTC
CCAAGCTTAGCTCGTCAAAAGAGGAAACTTCTGTTTCATCTGAGACTACT
GCAGGCAAGGAAGCTAAATCTCCAAAACGAATCAATTCTTCAAAATCGGA
GAATTCTATGAAAAATAAACGAAAATCAACTGATGATAATGTTGATAAAG
ATTCAAGCGAAAAGAAGAAGAAAGTTGCCACGACCTCTGAGGAGATTTAT
AAAAAACCTAGAGATGAGATTAAACATTCTGAAAAGCCTGTTGGTGACAA
ACCTGGTGAAAGATCAGTTGATTACCAAAAGGAGAAATTAAACAAGAGAA
AGGATATTAAAACATCACCTCAACGACGAATGACAGATGGCGAAAAAATG
AATTTCTATAATGTTGTTCTTCAAAGAAAGAAAGCAAAACAGAAGCAAAA
AGAAAAAGAAGCCAAACGAAAACTCTCAATTGATACGAAGCACAAGTTGA
AAGAGATACCTCTTTTAGCTTCTCCTGAGTATCAGAAGTCATCAATGGGG
AGCTTGATACAACCATGCTCTGTCAAGGTGCAAAGACTTTCGAAAGATAA
ACTCGTTCCTGAGATGGAGTTCTTCAAATTGGGTCAGAGGGGTGACGAAA
AGACTAATACAAAGACTACTGCTAAAAATATGAAACCTAATAACACAATC
ACCAAACTTGGAAACAAGGCTTTTAACGAATCTTCAAGGTTAAATGACAA
ACCAAAACCTAGAGATTCGAAGCCTTCGTTTTCAAACAGAATTGAAACAT
CGAGTTCAAAAAGAACTCAAAACCTACTCCCGGCCGGTAGACCGTCAACA
ACAAAAAAGACTCGTGTAGACCAGTCTTCTACAGAAACTAACAACAACAT
TGCGACCACTAATAATAATAATAATCAAGAAAATAAAACTATCAAACGGT
ACATGGCTAAACGCTCGTCACCCCCGACAAAATCAGCACCCAGACCCCTT
GAAACATCATCCAAGACTTTCGATAAGAATTTTCTTAGCGTTTTTAATAC
TGTATTTGAAAAGAATGAGTGA

Coding sequence (CDS) from alignment at sc0000057_pilon:1296889..1300110-

>XLOC_031730 ID=XLOC_031730|Name=XLOC_031730|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6444bp|location=Sequence derived from alignment at sc0000057_pilon:1296889..1300110- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTCATGTTGGAAAATTATGTTGTCCTTTCACCAAGAGGAAACGGGAA
GCCATTCTTCTCACTTATATCTTCAAGACCTGTCCAGCAAATTTCACAAA
GCGAACGATTACAAGTTAATAAATTGATATGCCACGTGCAAGATGCTTTA
CTGGAGTTTCAGGACGCTACAATGAAATTAAACTTTTTAAAAACTAAACA
CCATATGGTTACTTCAGACCGTGATCAAGTTTTACAGCTCATGTACGGAA
TTTCACAACAATTCACCTCCATCAAATTAAACATTCGGACGATGTTATCG
AGTCTGGTTCGAAACGGTTATTCAGTATGTGATGGTATTCAATTTCAAAA
TGTCACAGATATGGATAATTTAATGTTACAAAAATACTTAACGAACGGTC
CCCAACGGATTACTTTGAACCCAAACACTTTACAACTTCAGGAGGGTAGA
GATCAACAAATGCAGATTGACCAACAGCTCCCGTCACCACCCACAGTTAT
GTCAAACCATCAACCAAGATATAATCATGCGGCACCATCTTCGCCACCAA
ATGTTCAAAATCAAACTTCTTTCCACCAAGAGCGAGCCAATAGTCATCAC
CCACTCCCCAATTCATACGGTGAACAATCTCAAGTCTCGCCAACTCAACA
AACATTCACAAACCAATCAAATGTCCAACACAAAACCTCTTCAAATCCCC
TCGAAAACAACCAACAAGCTTCTCATTCAAACTATCCAAACGGAGTGCCC
CAACAAATTCAACAACAGCCAACATCATCGTTAGAGCATCAACTGAACTT
CCATCAATACAAACCCAACCAAAATGACGGAATCTCACATATCAATAACG
AGAGTCGCAAAGCTGAAAACGAACTTGAGAATCAACCAAAAGGTAAAGAT
GAATGCCGGACAGCATGCGATTCTCAACCACCAAGAAACAATCACCAAGA
ACAAGATTCTCGACCAGCATCTACAGAAAGTTCGACCAGTACTTTCTCTA
CAGAAGATTTGGACGAGTTTGATAGATTAGTGGAAGACTATGTCGCGAAA
AATATCGATAAACTTTTGAGGTATGATGACCCAGATTACATTCAAATCAA
AAAAGAGAAACTTGAAAATGAAAATAACGAACACTCATGCTGTAGTTATG
AACAGCAACAAACTGCAAATTCACATTCTCCAACATCGATCTTACCAGAA
CTGCGAAACACCCAACATCCAGAAGATCCAACCACTACAAAAATACCCCC
ACAAATACCATCCTCGCCATCGACAGCTGTACCCGAAAGAGAATCAACTT
CACCACCCGAATCTTCCAACAACCAACAGCTTCCATATCAAAACCAGATA
CCTTCAATACCTTCAAAATTGGCAGCAAAATCACAATCTCCAAGAGTGAT
TCCAAATTATCAAGGAAAATTTTCGACCTCTACTGTTTTCGAGTTTCCTC
CAAGGATGCCAGCATTACCTCAATATTCCCCCAAACCTACCAAATCATCA
CCAAAGACTATCGATTCTCCAAGCTCCTTAAAGAGACTTTCTAAACCTGA
ATCGTCCACAATCAAATACATCGCAAAAGAATCTCCAAAACCAACCAGTA
AGCCTGAAAATAAACCTTCCAAAACCCAATTGAATGAAGACGAACCAAAT
GAACAGAAAACCAATAAAACTTCACCGAATGCTTCTGTTAAACAGGAAAT
CGTATCAAAAGTTCGCTCGACATTCCTTTCACATCTCGTCAAATCGAAAG
TTCCTCAATCAACAAAAGCAATCAAGTCCGAAATTGCACCAAAGCCAGAT
TCGTCAACTTCATCGGAACCTGATTCTGAACGCAACGACGCTATTAAAAC
AACCCCATCTAAAAACGATACACAAGAACAACTTAACCGTTCCATCCATC
CGACATCCAAGCATGAAAAACGTAAACCCAAGGTAGAAAAGAATCATTCT
TCACCAGTCTCCAAACCACCGAGTAGCGACGAAGACGTTACCATCACCAA
AGTCCGGTACATGGCTCGCCGGACTCCATCAAATTGCGTCACCAAAGAAC
TTCGATCATTTCAAGCGATCAAGAAAGAAGTCAAAGATGACGTCATCCTT
GAGAAAAATGATGTCATTGACGATAAAACTAATGGGAAATCAGCGAGCAA
TATCGTTGATGGTCAGAAGTCTATAAATGTAGAGAAAAAGGAGAAAGCTC
CCAAGCTTAGCTCGTCAAAAGAGGAAACTTCTGTTTCATCTGAGACTACT
GCAGGCAAGGAAGCTAAATCTCCAAAACGAATCAATTCTTCAAAATCGGA
GAATTCTATGAAAAATAAACGAAAATCAACTGATGATAATGTTGATAAAG
ATTCAAGCGAAAAGAAGAAGAAAGTTGCCACGACCTCTGAGGAGATTTAT
AAAAAACCTAGAGATGAGATTAAACATTCTGAAAAGCCTGTTGGTGACAA
ACCTGGTGAAAGATCAGTTGATTACCAAAAGGAGAAATTAAACAAGAGAA
AGGATATTAAAACATCACCTCAACGACGAATGACAGATGGCGAAAAAATG
AATTTCTATAATGTTGTTCTTCAAAGAAAGAAAGCAAAACAGAAGCAAAA
AGAAAAAGAAGCCAAACGAAAACTCTCAATTGATACGAAGCACAAGTTGA
AAGAGATACCTCTTTTAGCTTCTCCTGAGTATCAGAAGTCATCAATGGGG
AGCTTGATACAACCATGCTCTGTCAAGGTGCAAAGACTTTCGAAAGATAA
ACTCGTTCCTGAGATGGAGTTCTTCAAATTGGGTCAGAGGGGTGACGAAA
AGACTAATACAAAGACTACTGCTAAAAATATGAAACCTAATAACACAATC
ACCAAACTTGGAAACAAGGCTTTTAACGAATCTTCAAGGTTAAATGACAA
ACCAAAACCTAGAGATTCGAAGCCTTCGTTTTCAAACAGAATTGAAACAT
CGAGTTCAAAAAGAACTCAAAACCTACTCCCGGCCGGTAGACCGTCAACA
ACAAAAAAGACTCGTGTAGACCAGTCTTCTACAGAAACTAACAACAACAT
TGCGACCACTAATAATAATAATAATCAAGAAAATAAAACTATCAAACGGT
ACATGGCTAAACGCTCGTCACCCCCGACAAAATCAGCACCCAGACCCCTT
GAAACATCATCCAAGACTTTCGATAAGAATTTTCTTAGCGTTTTTAATAC
TGTATTTGAAAAGAATGAGTGAATGTTCATGTTGGAAAATTATGTTGTCC
TTTCACCAAGAGGAAACGGGAAGCCATTCTTCTCACTTATATCTTCAAGA
CCTGTCCAGCAAATTTCACAAAGCGAACGATTACAAGTTAATAAATTGAT
ATGCCACGTGCAAGATGCTTTACTGGAGTTTCAGGACGCTACAATGAAAT
TAAACTTTTTAAAAACTAAACACCATATGGTTACTTCAGACCGTGATCAA
GTTTTACAGCTCATGTACGGAATTTCACAACAATTCACCTCCATCAAATT
AAACATTCGGACGATGTTATCGAGTCTGGTTCGAAACGGTTATTCAGTAT
GTGATGGTATTCAATTTCAAAATGTCACAGATATGGATAATTTAATGTTA
CAAAAATACTTAACGAACGGTCCCCAACGGATTACTTTGAACCCAAACAC
TTTACAACTTCAGGAGGGTAGAGATCAACAAATGCAGATTGACCAACAGC
TCCCGTCACCACCCACAGTTATGTCAAACCATCAACCAAGATATAATCAT
GCGGCACCATCTTCGCCACCAAATGTTCAAAATCAAACTTCTTTCCACCA
AGAGCGAGCCAATAGTCATCACCCACTCCCCAATTCATACGGTGAACAAT
CTCAAGTCTCGCCAACTCAACAAACATTCACAAACCAATCAAATGTCCAA
CACAAAACCTCTTCAAATCCCCTCGAAAACAACCAACAAGCTTCTCATTC
AAACTATCCAAACGGAGTGCCCCAACAAATTCAACAACAGCCAACATCAT
CGTTAGAGCATCAACTGAACTTCCATCAATACAAACCCAACCAAAATGAC
GGAATCTCACATATCAATAACGAGAGTCGCAAAGCTGAAAACGAACTTGA
GAATCAACCAAAAGGTAAAGATGAATGCCGGACAGCATGCGATTCTCAAC
CACCAAGAAACAATCACCAAGAACAAGATTCTCGACCAGCATCTACAGAA
AGTTCGACCAGTACTTTCTCTACAGAAGATTTGGACGAGTTTGATAGATT
AGTGGAAGACTATGTCGCGAAAAATATCGATAAACTTTTGAGGTATGATG
ACCCAGATTACATTCAAATCAAAAAAGAGAAACTTGAAAATGAAAATAAC
GAACACTCATGCTGTAGTTATGAACAGCAACAAACTGCAAATTCACATTC
TCCAACATCGATCTTACCAGAACTGCGAAACACCCAACATCCAGAAGATC
CAACCACTACAAAAATACCCCCACAAATACCATCCTCGCCATCGACAGCT
GTACCCGAAAGAGAATCAACTTCACCACCCGAATCTTCCAACAACCAACA
GCTTCCATATCAAAACCAGATACCTTCAATACCTTCAAAATTGGCAGCAA
AATCACAATCTCCAAGAGTGATTCCAAATTATCAAGGAAAATTTTCGACC
TCTACTGTTTTCGAGTTTCCTCCAAGGATGCCAGCATTACCTCAATATTC
CCCCAAACCTACCAAATCATCACCAAAGACTATCGATTCTCCAAGCTCCT
TAAAGAGACTTTCTAAACCTGAATCGTCCACAATCAAATACATCGCAAAA
GAATCTCCAAAACCAACCAGTAAGCCTGAAAATAAACCTTCCAAAACCCA
ATTGAATGAAGACGAACCAAATGAACAGAAAACCAATAAAACTTCACCGA
ATGCTTCTGTTAAACAGGAAATCGTATCAAAAGTTCGCTCGACATTCCTT
TCACATCTCGTCAAATCGAAAGTTCCTCAATCAACAAAAGCAATCAAGTC
CGAAATTGCACCAAAGCCAGATTCGTCAACTTCATCGGAACCTGATTCTG
AACGCAACGACGCTATTAAAACAACCCCATCTAAAAACGATACACAAGAA
CAACTTAACCGTTCCATCCATCCGACATCCAAGCATGAAAAACGTAAACC
CAAGGTAGAAAAGAATCATTCTTCACCAGTCTCCAAACCACCGAGTAGCG
ACGAAGACGTTACCATCACCAAAGTCCGGTACATGGCTCGCCGGACTCCA
TCAAATTGCGTCACCAAAGAACTTCGATCATTTCAAGCGATCAAGAAAGA
AGTCAAAGATGACGTCATCCTTGAGAAAAATGATGTCATTGACGATAAAA
CTAATGGGAAATCAGCGAGCAATATCGTTGATGGTCAGAAGTCTATAAAT
GTAGAGAAAAAGGAGAAAGCTCCCAAGCTTAGCTCGTCAAAAGAGGAAAC
TTCTGTTTCATCTGAGACTACTGCAGGCAAGGAAGCTAAATCTCCAAAAC
GAATCAATTCTTCAAAATCGGAGAATTCTATGAAAAATAAACGAAAATCA
ACTGATGATAATGTTGATAAAGATTCAAGCGAAAAGAAGAAGAAAGTTGC
CACGACCTCTGAGGAGATTTATAAAAAACCTAGAGATGAGATTAAACATT
CTGAAAAGCCTGTTGGTGACAAACCTGGTGAAAGATCAGTTGATTACCAA
AAGGAGAAATTAAACAAGAGAAAGGATATTAAAACATCACCTCAACGACG
AATGACAGATGGCGAAAAAATGAATTTCTATAATGTTGTTCTTCAAAGAA
AGAAAGCAAAACAGAAGCAAAAAGAAAAAGAAGCCAAACGAAAACTCTCA
ATTGATACGAAGCACAAGTTGAAAGAGATACCTCTTTTAGCTTCTCCTGA
GTATCAGAAGTCATCAATGGGGAGCTTGATACAACCATGCTCTGTCAAGG
TGCAAAGACTTTCGAAAGATAAACTCGTTCCTGAGATGGAGTTCTTCAAA
TTGGGTCAGAGGGGTGACGAAAAGACTAATACAAAGACTACTGCTAAAAA
TATGAAACCTAATAACACAATCACCAAACTTGGAAACAAGGCTTTTAACG
AATCTTCAAGGTTAAATGACAAACCAAAACCTAGAGATTCGAAGCCTTCG
TTTTCAAACAGAATTGAAACATCGAGTTCAAAAAGAACTCAAAACCTACT
CCCGGCCGGTAGACCGTCAACAACAAAAAAGACTCGTGTAGACCAGTCTT
CTACAGAAACTAACAACAACATTGCGACCACTAATAATAATAATAATCAA
GAAAATAAAACTATCAAACGGTACATGGCTAAACGCTCGTCACCCCCGAC
AAAATCAGCACCCAGACCCCTTGAAACATCATCCAAGACTTTCGATAAGA
ATTTTCTTAGCGTTTTTAATACTGTATTTGAAAAGAATGAGTGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_031730	XLOC_031730-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000057_pilon	genome	sc0000057_pilon:1296889..1300110 -

Properties


Property Name	Value
Aaloc	3061-3225:166
Aaloc	958-3057:2266
Aaloc	793-957:2434
Aaloc	1-789:3223

You are here

XLOC_031730 (mRNA) -