XLOC_031712 (mRNA) -

Overview


Name	XLOC_031712
Unique Name	XLOC_031712
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000057_pilon:631014..635956-
coding sequence from alignment at sc0000057_pilon:631014..635956-

mRNA from alignment at sc0000057_pilon:631014..635956-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_031712 ID=XLOC_031712|Name=XLOC_031712|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4943bp|location=Sequence derived from alignment at sc0000057_pilon:631014..635956- (Clytia hemisphaerica_ch_hm2_pilon)
AAAAAAAATAGTTTAAGAACCATGATTGTTTTTCAATTTGCTATCTTGTT
TACGATAATCTCTTCGGGACTGGGACGAGTCTTTGTAGTGGATAACACGT
CACAACAGGACAAGGCTGATGGCTCTGTTGGATCACCTTTCAAAACAATC
CAAGATTGTGTCAACGCTCTCAAAACTATTGGAAAGCCAGGTAAATTGAT
AAGACTTTTTTTTCGATCATAATTGTTTGATGGATACAGTTGACATAATT
CGACGTTCTTTTATTCGATACACTACACTCCATTATCCGATACACTATTG
AAAGTCACTTTCAACAAAAAACTCTCATGTTATTATTCAATACGTTCCCT
TAAAGCTTATTGGATGCATATTGGATGAAAATCCAATTCCTTTTGATTGA
GAATCGAATTAGAGACTACTGTAGTAAACATCTGCAGGCTACCTTATCGG
GGAAAACTTCGTCGGGGAAAAGTGACGAAATTTTGGACAGGTGACGAATA
TTTTCCCCGACGAAAATTTTCCCCGGCCTTAATGCATTTACCAACTACCA
GCAAGTGACGAATTTTTCCCCGACGAAAATTTCCCCGACGAAAATTTTCC
CCGACGGAGTTTTCCCCGATAAAGTATTTCACTTTAACGCGCCATTATTT
TGACAAATATTAGAATACATTACGATACATTTTGTACTTTAGAATTATCG
TCTAGAATTGGATCAAATTTTAGAATTTTTTTCCATAAAGTTTTGAAAAA
GGCGGGAGATATGAAAAATCTTTTGCCGTCAATGAAACCAGTCAGAACTT
GTGTTCTTTATCATTGTGAACTAAATGTATAAAAACCTCTTCAACCAATC
ATCATAGAAAAGCAGAGCAGAATTCAAATATACCAACAATTTGTACATTG
TAATATTTTCAAACTAACCACTTTTGCCGTTTAAAACTCGAAAGTACCGA
GTTTATGGATGTGTGTTTTTAAGCGATGGAGACGGTAAGGTTCTAATTTT
ACTAAATCCTGACCAACTGAGGACGACGGTAAATCAGCACCGTCCTCGAT
TTTGCAGGGCAGAACTGCGGGTTATTCCAAATCGCTTCAGTCACTTTACC
GTCCTCAAAAGCGCAAATACATAAACTCGCTAGTGATATCGCTTCAAACA
CGAGGAATATTTTTCCAACTTAGAGAACTTTTTCAAACAATCTTAGTTGA
GTAGAGCTCAAATCTCAGGTTTCAATGAAATTGATTGTTATGAATTGAAT
TTCATCCCAGGAGATGAATGCCAGATTCGTGCTGGACAGTACCACGAAAA
TGTGAAGATTGACAATCTTCAAGGTACACCAAACCAACCGTTTATGATCC
GTGGATATGGAGACGAACGTCCAAAAATTGACGGAACAATTCCCATATTT
CCGGCAATCGATCCGGAGACGGGTGACCGTTATGATTGGAAAACTTTGAG
TGAGGATTCGAAAATCTATAAGTAAGTTATGTCTGGTTCCTAATATATAC
CGAGTTGTCCATATATTTGTAGTGTAAATATTTCGATCACAGACTTGACG
CAATGAACTCGAATCCCAATCATTTCTAGGTAAGGTGTTAGGGGAGACTC
TCTATACCTTTACTTGGTTCCTAACATTGAAAGAATTGATGAATGTTGAA
TCTTTTAATAAAATGCTGAATGAAGCCCTAGTGGCACAGGGCAATATACA
TTCTATAAGTATATACTATATTTTCAGAACGAAAATCAATCAAGACATTT
GGCAACTCTTTGTAAACAACCAAATGATGACCAATGCAAGATGGCCTAAC
GCTAAATGGTCAGATCGCTCCATCTTCAAAGGTTCGTTATGGGCCAAACT
TGACAACGCGTCAAAGAAAGGTTATATGGTGAACAAAGGACGAAGCCTGG
CGCAAACGAACATAAATATGACGAACGCAGTAGCCGTATTGAACATTGGT
AGTTTCAACACCTTTGTGGCTAAAGTTGAAGATCATCAGGCTGGTCAGAA
TTGGTTTAACTACAAGGATACGTTTAACAATGACAAATTCAAACCATCTA
TCAGTAAATATTTCATTGAAGATAAATTAGAGCTTTTAGACACCCCAGAA
GAATGGTTTTATAATCAGGAAACCAAAACACTATATGTGTGGATGCCAAA
CGGAGATTCACCAAGAGATCATGAATTGCGTGGTAAGGTTCAAACATATG
CTATGGAAATTACCAATACTCATAACTTGGTTCTCAAAAACCTAGATTTT
TTTGCCACCGCAATCTCAGCCATCAGCAGTCGTTCAGAAAATATTGATGG
TGTGAAATTTGATTCACTCATCTTCAACTATCCGACCTACTCTAAACGAA
TGTTAGGTGATATCTCACTAATAAAACTTATCAGGGCCTTGGGAAGATCT
AGGCGAAACTATGGAAGTTTCGTCTTTTTCAATAACACGTTTTATGGCTC
TGACGGAGCGACCCTAGATGTTAACGGCTTTAACGTTACCTACGACAACA
ACCTTTGGGAATACAATGACTGGACCGGTGCCAATATGCTCACATTCAAC
GGCGGAGAAGGGCCGATCAATACTTACGCGCGAAATGAAGTGTACTATAG
AAACACATTCCGGTAAGTTTTGTTTACAGAGTAACAAGCTTGTAGTTTTG
CGAAAACCAGCATCACTGCCACCAGATTCACAATTTACTTTACAACTCGC
ACTTTTAATTAGTAACTCGCACTTTTAATTTATAACTCGCACTATAAATT
TGCAACTCATGCTTCTGATGTCTTATCAAACAATTTTCAACTCACAACTC
GCGATTTTATTTTATTTTATTTTCGATTTTAAATGCAACTAGTAACTCGT
AAAAAGTAGCACGCAACTCGCATATCTAATATCAACCGATTTTAAATGCA
ACTCGTAACTCGTAAAAAGTAGCACGCAACTCGCATATCTAATATCAACT
CGTAACTCACAAGACCAACTCGCAACTTGTATAGTATCCAATTCATAGTG
TAGCCCGTAGATATCGGATAAATCAGACACGTTTTGCGGACGTTAAAAAT
TCAAAAAATGATGGAAGTTTCCACCTAGAAAAGCAACTATTAATTTAAAA
AGTTCAACATATACCAACCGTTATCTCTTTCCAGGTACAACGATGCAAGT
ACATCCATTCAACCTGGTTTGAATCCTCGCATCATATTAAATCACGTTGG
GGGACCATACAAAATGATGGCGCCGGTATTCATTTAATGAGGGGACAACA
GATGAATGCTCAATTGAGATATAACTGGGTAAGATTTTAAGTTAAGAATC
AAAGCCATCAGACGATATCATTTAGCGGCTAGTCGGCTAGAATCTGTGGG
ATATTTTATTGGACGCAACAGCGTGGGGTTAGATTGAATATTAGATCCAT
ATTTCCGGTAGGAATGCCTTATATGCAGAAACTTAATTGAAGTAAAGTTG
TAACAGATTTCTTCAGTTCAATTAGCGAGGTTAAGCAAGTGTTTATTTAG
ACCGTTCAATGCGATATCTGAGGCCTGTACATAAAATTTCACTTGCATGG
TTTGCTTTGGCAAGTTATGTACAGGCCTACGGTATCGCACTTTATGGTCA
AATTAAACCCGTGCTTAACCTCGCTATTACAAAGATTCGCCGTCATGTTT
TTTTTCATTCAATCATCAGGTACACAATACTCCAAAATATGCTCTTCGTT
TTGACGGTCAACCACCGCGTATTGGTCGAAATGGAACAATGTCGCATAAT
GTTGCTTTTCAATCAAACGGAATCATGGTCAAAGGTATTTTCTATACATT
TATTAAATTCATGTAAATGAGGTAAATTATAGAAGAAATGTTTTCAATCA
AGAAAATCTATTTGAAATATTCAAAAGGGGATAAGTATAAACCATTTGTA
ATCAATGTGTTCATAGAATGATATCTAATCCCCAGTCCATGGTGTCGGTA
ACAAAGAATTCTAAGCTCTCGTCTAGACTGCCCACTTTTCGCCCTGCCAA
TACTATTTGTGAACTAAAGTGGGTAGAAAGTTGGTTGTCTAGAAAGTCAA
CGCATTGCCCTCTTTTGACGTCAATACAATGACTTTTTTCAATCTTTTTG
AAAAGAAGATTTTAAAATGCCAATTTTATGCTTAATTTTTGTATGCTCTA
ACAATTAGAATAAACAGGACAGAAAGTCGGCCGTCTAAACTAGTAGAGTT
TATAAACTCATTAGTCAATTTTAATCACTCTTTCAGGCGACAGTCATTTG
GTAGAGAACAACTTGGCTTTCCAGAAATACAATGAAAATGACGATGACAA
ACAGGGCACCGGATGTTCCCTGTGTATCCTCAAATTCGTTCGGGCAAACC
CTGGTCAAATCAACAACAACTCAGTAGTCATCAACAATATAGCAGACAGG
GCGAATGGCGGAATTAACGTATGGAAGAGACCAAATGTCTTCCCAGTACC
AGGGCGTATCGTTAAAAATAATGAATTCAATGCGAAAATTGCTGAACAAA
TTATGGATCATAATAATTTCGATTTTAGGCCAGTCAAAGGTTCTCGAGCT
GCTGTCAACGGAATAGGCCCGTACCGCTACGAAGAACGAATGACTGAATA
TTGGATTCCCGGGCGCAAGTTATACAAAACATCCACCCCAGTCCCACAAA
ACGGCTCGGTTACCGTTAAAGCGGCTCGCCGTGACGCCGTCATGTTTCTG
CAAGCTTGGGACTGCCGTACGCATATTATTTATTTTGGATCAAACAAAAG
AGCCGTTGAAAATGCTCGAGATGTCGACGATATCAATTACCTTGGAACTC
TTGAGAATGGTTCCAACGTTTTTTATCTCCCTAATAAATTGTCCAAATTA
GCCACCTACTTTTGGCGTGTGGACGCTATGACAGACACAGGTATAGTTTA
TAAAGGAGATGTATGGAATTTTACAACAAAAGGCGACTTGTAA

Coding sequence (CDS) from alignment at sc0000057_pilon:631014..635956-

>XLOC_031712 ID=XLOC_031712|Name=XLOC_031712|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4532bp|location=Sequence derived from alignment at sc0000057_pilon:631014..635956- (Clytia hemisphaerica_ch_hm2_pilon)
AAAAAAAATAGTTTAAGAACCATGATTGTTTTTCAATTTGCTATCTTGTT
TACGATAATCTCTTCGGGACTGGGACGAGTCTTTGTAGTGGATAACACGT
CACAACAGGACAAGGCTGATGGCTCTGTTGGATCACCTTTCAAAACAATC
CAAGATTGTGTCAACGCTCTCAAAACTATTGGAAAGCCAGAAAAAAAATA
GTTTAAGAACCATGATTGTTTTTCAATTTGCTATCTTGTTTACGATAATC
TCTTCGGGACTGGGACGAGTCTTTGTAGTGGATAACACGTCACAACAGGA
CAAGGCTGATGGCTCTGTTGGATCACCTTTCAAAACAATCCAAGATTGTG
TCAACGCTCTCAAAACTATTGGAAAGCCAGGAGATGAATGCCAGATTCGT
GCTGGACAGTACCACGAAAATGTGAAGATTGACAATCTTCAAGGTACACC
AAACCAACCGTTTATGATCCGTGGATATGGAGACGAACGTCCAAAAATTG
ACGGAACAATTCCCATATTTCCGGCAATCGATCCGGAGACGGGTGACCGT
TATGATTGGAAAACTTTGAGTGAGGATTCGAAAATCTATAAGAGATGAAT
GCCAGATTCGTGCTGGACAGTACCACGAAAATGTGAAGATTGACAATCTT
CAAGGTACACCAAACCAACCGTTTATGATCCGTGGATATGGAGACGAACG
TCCAAAAATTGACGGAACAATTCCCATATTTCCGGCAATCGATCCGGAGA
CGGGTGACCGTTATGATTGGAAAACTTTGAGTGAGGATTCGAAAATCTAT
AAAACGAAAATCAATCAAGACATTTGGCAACTCTTTGTAAACAACCAAAT
GATGACCAATGCAAGATGGCCTAACGCTAAATGGTCAGATCGCTCCATCT
TCAAAGGTTCGTTATGGGCCAAACTTGACAACGCGTCAAAGAAAGGTTAT
ATGGTGAACAAAGGACGAAGCCTGGCGCAAACGAACATAAATATGACGAA
CGCAGTAGCCGTATTGAACATTGGTAGTTTCAACACCTTTGTGGCTAAAG
TTGAAGATCATCAGGCTGGTCAGAATTGGTTTAACTACAAGGATACGTTT
AACAATGACAAATTCAAACCATCTATCAGTAAATATTTCATTGAAGATAA
ATTAGAGCTTTTAGACACCCCAGAAGAATGGTTTTATAATCAGGAAACCA
AAACACTATATGTGTGGATGCCAAACGGAGATTCACCAAGAGATCATGAA
TTGCGTGGTAAGGTTCAAACATATGCTATGGAAATTACCAATACTCATAA
CTTGGTTCTCAAAAACCTAGATTTTTTTGCCACCGCAATCTCAGCCATCA
GCAGTCGTTCAGAAAATATTGATGGTGTGAAATTTGATTCACTCATCTTC
AACTATCCGACCTACTCTAAACGAATGTTAGGTGATATCTCACTAATAAA
ACTTATCAGGGCCTTGGGAAGATCTAGGCGAAACTATGGAAGTTTCGTCT
TTTTCAATAACACGTTTTATGGCTCTGACGGAGCGACCCTAGATGTTAAC
GGCTTTAACGTTACCTACGACAACAACCTTTGGGAATACAATGACTGGAC
CGGTGCCAATATGCTCACATTCAACGGCGGAGAAGGGCCGATCAATACTT
ACGCGCGAAATGAAGTGTACTATAGAAACACATTCCGAACGAAAATCAAT
CAAGACATTTGGCAACTCTTTGTAAACAACCAAATGATGACCAATGCAAG
ATGGCCTAACGCTAAATGGTCAGATCGCTCCATCTTCAAAGGTTCGTTAT
GGGCCAAACTTGACAACGCGTCAAAGAAAGGTTATATGGTGAACAAAGGA
CGAAGCCTGGCGCAAACGAACATAAATATGACGAACGCAGTAGCCGTATT
GAACATTGGTAGTTTCAACACCTTTGTGGCTAAAGTTGAAGATCATCAGG
CTGGTCAGAATTGGTTTAACTACAAGGATACGTTTAACAATGACAAATTC
AAACCATCTATCAGTAAATATTTCATTGAAGATAAATTAGAGCTTTTAGA
CACCCCAGAAGAATGGTTTTATAATCAGGAAACCAAAACACTATATGTGT
GGATGCCAAACGGAGATTCACCAAGAGATCATGAATTGCGTGGTAAGGTT
CAAACATATGCTATGGAAATTACCAATACTCATAACTTGGTTCTCAAAAA
CCTAGATTTTTTTGCCACCGCAATCTCAGCCATCAGCAGTCGTTCAGAAA
ATATTGATGGTGTGAAATTTGATTCACTCATCTTCAACTATCCGACCTAC
TCTAAACGAATGTTAGGTGATATCTCACTAATAAAACTTATCAGGGCCTT
GGGAAGATCTAGGCGAAACTATGGAAGTTTCGTCTTTTTCAATAACACGT
TTTATGGCTCTGACGGAGCGACCCTAGATGTTAACGGCTTTAACGTTACC
TACGACAACAACCTTTGGGAATACAATGACTGGACCGGTGCCAATATGCT
CACATTCAACGGCGGAGAAGGGCCGATCAATACTTACGCGCGAAATGAAG
TGTACTATAGAAACACATTCCGTTATCTCTTTCCAGGTACAACGATGCAA
GTACATCCATTCAACCTGGTTTGAATCCTCGCATCATATTAAATCACGTT
GGGGGACCATACAAAATGATGGCGCCGGTATTCATTTAATGAGGGGACAA
CAGATGAATGCTCAATTGAGATATAACTGGTTATCTCTTTCCAGGTACAA
CGATGCAAGTACATCCATTCAACCTGGTTTGAATCCTCGCATCATATTAA
ATCACGTTGGGGGACCATACAAAATGATGGCGCCGGTATTCATTTAATGA
GGGGACAACAGATGAATGCTCAATTGAGATATAACTGGGTACACAATACT
CCAAAATATGCTCTTCGTTTTGACGGTCAACCACCGCGTATTGGTCGAAA
TGGAACAATGTCGCATAATGTTGCTTTTCAATCAAACGGAATCATGGTCA
AAGGTACACAATACTCCAAAATATGCTCTTCGTTTTGACGGTCAACCACC
GCGTATTGGTCGAAATGGAACAATGTCGCATAATGTTGCTTTTCAATCAA
ACGGAATCATGGTCAAAGGCGACAGTCATTTGGTAGAGAACAACTTGGCT
TTCCAGAAATACAATGAAAATGACGATGACAAACAGGGCACCGGATGTTC
CCTGTGTATCCTCAAATTCGTTCGGGCAAACCCTGGTCAAATCAACAACA
ACTCAGTAGTCATCAACAATATAGCAGACAGGGCGAATGGCGGAATTAAC
GTATGGAAGAGACCAAATGTCTTCCCAGTACCAGGGCGTATCGTTAAAAA
TAATGAATTCAATGCGAAAATTGCTGAACAAATTATGGATCATAATAATT
TCGATTTTAGGCCAGTCAAAGGTTCTCGAGCTGCTGTCAACGGAATAGGC
CCGTACCGCTACGAAGAACGAATGACTGAATATTGGATTCCCGGGCGCAA
GTTATACAAAACATCCACCCCAGTCCCACAAAACGGCTCGGTTACCGTTA
AAGCGGCTCGCCGTGACGCCGTCATGTTTCTGCAAGCTTGGGACTGCCGT
ACGCATATTATTTATTTTGGATCAAACAAAAGAGCCGTTGAAAATGCTCG
AGATGTCGACGATATCAATTACCTTGGAACTCTTGAGAATGGTTCCAACG
TTTTTTATCTCCCTAATAAATTGTCCAAATTAGCCACCTACTTTTGGCGT
GTGGACGCTATGACAGACACAGGTATAGTTTATAAAGGAGATGTATGGAA
TTTTACAACAAAAGGCGACTTGTAAGCGACAGTCATTTGGTAGAGAACAA
CTTGGCTTTCCAGAAATACAATGAAAATGACGATGACAAACAGGGCACCG
GATGTTCCCTGTGTATCCTCAAATTCGTTCGGGCAAACCCTGGTCAAATC
AACAACAACTCAGTAGTCATCAACAATATAGCAGACAGGGCGAATGGCGG
AATTAACGTATGGAAGAGACCAAATGTCTTCCCAGTACCAGGGCGTATCG
TTAAAAATAATGAATTCAATGCGAAAATTGCTGAACAAATTATGGATCAT
AATAATTTCGATTTTAGGCCAGTCAAAGGTTCTCGAGCTGCTGTCAACGG
AATAGGCCCGTACCGCTACGAAGAACGAATGACTGAATATTGGATTCCCG
GGCGCAAGTTATACAAAACATCCACCCCAGTCCCACAAAACGGCTCGGTT
ACCGTTAAAGCGGCTCGCCGTGACGCCGTCATGTTTCTGCAAGCTTGGGA
CTGCCGTACGCATATTATTTATTTTGGATCAAACAAAAGAGCCGTTGAAA
ATGCTCGAGATGTCGACGATATCAATTACCTTGGAACTCTTGAGAATGGT
TCCAACGTTTTTTATCTCCCTAATAAATTGTCCAAATTAGCCACCTACTT
TTGGCGTGTGGACGCTATGACAGACACAGGTATAGTTTATAAAGGAGATG
TATGGAATTTTACAACAAAAGGCGACTTGTAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_031712	XLOC_031712-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000057_pilon	genome	sc0000057_pilon:631014..635956 -

Properties


Property Name	Value
Aaloc	1561-2265:706
Aaloc	1444-1557:1275
Aaloc	1342-1443:1768
Aaloc	1288-1341:1823
Aaloc	403-1284:3216
Aaloc	193-399:3682
Aaloc	1-189:4944

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XLOC_031712 (mRNA) -