XLOC_030899 (mRNA) -

Overview
NameXLOC_030899
Unique NameXLOC_030899
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000063_pilon:1638884..1645134+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030899 ID=XLOC_030899|Name=XLOC_030899|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6251bp|location=Sequence derived from alignment at sc0000063_pilon:1638884..1645134+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGAATTACACCTTCTTTTTCTACCGACCACtaaaggccgctacccactc agcattttatggtcggcgaacaaggcgcacggcttgggcgctttggtcgc tgaacgcttttctcattccactgatccaaaataaaggggagatatgctgc atattttttcttttttctattgttgatatttttgcaCACGGTACAAGAGA GTTAAATGTCTCGTCTGATTGGCtacttaaaaaagaacaatagggaaGCT GCACAGCTTggcgaaaaaagttgaaaagtttcaactcttgttgcgctcaa agcgacaacctttgaaggcttgatttatgtaatttatgcaataatcaagc cgtgcgccttgttcgccgaccataaaatgctgagtgggtagcggccttaa GACCTACTAAGTATTGTAGGCCTTACGTTGGTAGCAAACTTGATTGGTCC ACGGTCATGATATATTACGAGCATGAGTATAGGAAGGAAGCATTCAGGGA GCTTGGGAATTTTACTGCAAGACGTCTTGAGAATTACGTGATAATTCCTG AAATAGGTGTGGCAGGGCATGTCTCGCGAATTTATGACCTTTCCAATGAA ACTCCGTTCAAGGCGTTTCCTGCTGGTGAAATTCCAATACTGTATCAGTT AGATAATGGGTATGTTGTTTTCGAGTTTGGAGATGGCATTACTGCAAGAG AGGTCGATGAATTTCCAGAATTATGGAGATTTTCAGAGGAAAGTTCGGCA CTCGGAACTGTACCGATCATTGAAGGACATTTGGTGAGCCAGATGTTGAA CCTAAAGTTAGCTTCTACAAATGAGAATGAGCAGATTTGTGAGCTACAAG CTGAGCAGGAAAAACTGTACACAAGGATTCTTCAACATTTCCCCTCAACG GCAAACTTATGGGTCAAACGTGGAAGAAATGTGGTAGCAAAACCACTGGG TGATGCTATGGTATTAAAGGAATGTGATCTTGTCCAGAATTTTACAACAG TTTGGTCACGTCGAGTAAATAAAACGTGCTACTTACATTGTGCTTTGCAA CGTCCCGGCTCCTAAGAAATTGAAGGGTTTATGGACTTGACTAACAGGCA GGGGCTGACGTCGAGTCCGAAAATTCGATGTTCGGAGCGAAACAACCTTA CCTATAGTGTCGACGATCTCGAGGGAACATTCAAGGTCGATGCGCTTGGA AATACTGAAAGGGTTTCCCAACCACTGAATTCTCTCTATGATACTTATAG TTTCCAAGAAATAAAAGACATTGTTGGAGACCATCTAAACATCATTCTGA AAGAAAGGCCAAGCTTTCCCCCTGTTGTCATACAGGATATTGTCACCAAA TCATACGAGGTAATGAACGAAATTGGATGGGCATATGAGGACGTAAAGCC TAAAGACAAGCACCAAGTTGGAATTTTTGCTGCCGTCGCCCATGAACTGG GAGAGATTTTGTCTAGCTTCGGTCCTTCCAGAGTTATCTCGTCCTTGGAT GACGCCATAAAGGGAACAGTGGAAGGTGTAGGACACGCTGGTTCAGACTT GGTTGAAGCAATAGGAAACGCAGTGTCTGAGACCATCGATTCAACTGGAA GCGCGGCGAATCAAGTTGAAAGTTGATTCGCAGAAGTGATCAAGGCATGG TGGTCCATTATTCTTGAAGGTGGACTTTTGGTCTTGTTGATTGCCATATT GGCCGTTATCTACAAGACTTATGGTCACCGTAAGAATTCGACAACCATCA GTGCCCCGATTTACGAATCTACGAATTAACGAAGTGCACCCCGAGAAGCC TCCAAGACGTTGGTTACGACTATAGACAGTGATAACACTAACATTCGAAA GTTTTAGTTTGGGGACCAAACTTCCCGTAGGTGGAGGTATTGTCATGAGA TGAACTTTTGAATGCCACTAGGCATAAATTCTTATTTCACCTGAGAATAT AAACTcgagaaacagaaaaaaacagGGTCCTTCAAACTACCTCTCAACGA GGAAAATTCTTCCTGTTTGGGAAGATTTATTGTTTGACACTTTAAATGTA CAATTGACAAGTCGTATATGGACTCATATGCGTATATGGATTAAAGGAAG CAGAGAACTCCGCTGAAGCCAACAGCGGAGGCTTAGGTGAAATGGCTGAC TAGAACTTGTACTAAGATTATACTAAtgactttattttgttttacgAATT ACTTGGTTTATGGAAAGAGGTTTTTAAGGCGTTAACTTCCAATTCTTTGT TCCTATTGTGCTTTGACATCTATGATACCTAACCGGTTCTCTTCCAATTA TGGCTTGGGATCCTGAACTAATCCGGGGACAAATATAAATATTGCTGTTG TGGACTTTAGTCGGGAGTTACTTATTGAGCCGTACTCACTGCCCGTGAca ataggcaagaataaacaatcctaaaaactgttaaaatagaACAGAAGCCT AAAACATATTCTATTTTCTTTCAGTATGTCGATTAAATACAAATTTCCTT TAGGATGTTGAACTGTTttgcaacattcatggtgtcattgagttgtccag taaatcattaccgtgaaaagcacagctcaaaatcatatatttacgctgtg ccgacgaatcgagattctattcatcgcgcaatcagcgaagagaaaagtaa ccatgacgaccatccaagatcttggatgagcgtcaaagtcgatattttta ttcccgtcgttgaaaacacaacttacaaaaagtcatcaatgctttgtaaa aagagtcagtgatagagaatcataacattaagtctgtctattatttcgat tcaattaaagtgacatttccataattaaaagtttagtaattactgttata catttggggatcatgtaaaagatttctttcgaaataaactcatttcaact acacttggaggtttctggggaattcgtaaatagtaaactgcatactgata cagtctgctagacattaatatggtaatatttgttcttcatctttgatttt ttctacagtgattagattgacacatgcgcgataaaatttctattatttgt cttcagaggttactattttctttgaaaacttaacctctgatactcagggt agtaaatcatgataggcaagaataaacaatcctaaaaattgttaaaatag aatggaagcctaaaacatattctatttttattcagtatgtcgattggcaa gataaatagaaagcaatcttcgaaaaagcaaacTTCCTTTAGGATGTTGC ACTGTCTTGGGACATTCATGGTGCCATTGACGaggacaaaaaataccagg ggcgccaatttcatagtttgcaccaccaagaaaatttaGCCAGGTTGCTA CTGTCTTTATGCGATCGAATGTGAAGATTTGTACGCTGACATGAACGAGG ATAAGCATCTCTTCAACTTCTCGGATTATCCGAGAAATCATCAATGTTTT tcattacaaaataaaaaacggatTGGTAAAATGAAAGACGAGATGCATGC ATCCCTTATCTTAGAGTTTGTTGGTCTACGCGCTAAGATGTATTCTATCT TGGTCAATAggtcaaaagactttaacgttAAACGAGCAAAACGAGTGAAA AATTGTGTTGTGAAAAAGGAAATTTGTCTTTCCAATTACCGAGACGCTTT ATtgcaaaatattgaatttttacatttaATGAACAATATACGTTCCCATG GTCATGTCACGTTTACTGTACAACAGAACAAGATATGGTTACGTCCATGT GATGATAAAAGATTTATTATATCTGATGGTATAAGCACACGTCCTTATGG ACATTACAAAAACACGGAAGAGATGGAAGACAATGTAAATtgatatactt tttattttattttattgcatcttaattatattttaaatattacattcgca tgatacatttattaCACTATTATACTATTTACTTCTTCACCGTAGGGACC ATTGTTTGATTTAAAAGAAATCGACTTTTGAAAAGTCAATAGCTTCTTCA TTCACCATTTCTTTCGTTTTTAATCTCAATCTTTCCACTcctgaaaactc aaattttgaattcaggTATTTTATAATCTTCATGGCTTCTGctggaaata aataaattctattTCTGGACACTCCTTCAGTTATGTAAAATGAGAAACTG AAAATGATACGTTCTCGATTGAATTCTACTTTGACAATAGGACTATCGTT ATCATCGCCATCAACATCCAAATTTAATATATTCTTGTCACGTGATGAAC TGTAGAAAGCCACTAGGCACATATTTGAACGGAATACGAAAAACAAAGAC ACGGAAAGGATCTTTCAAACTGCCTCTGATCGAGGTGGGTTCTCCCTGTT TGGGTAGGTTTATTGTTTGACACCGAAGAATACATGTAAAATGACGCTGA CAAATGCGTGTAGGAGTTAAATGAAGCAGAGACTCCGCTGAGACAACAGC GGAGGGTTATGTTGAAATGGCATTGACAAAATGAAGCAGAGAATTCTGCT GAGCCAAAACCAGAGGGTTATTGTTAAATGTCATTGACATTATTGACTTT ATTGAGACTGAATTGATTACTGATTATTACGAATGAAATTGTGTATTTGA AATGGATGTGGTTATTATTGACATGATTTGGTATGGAAGATAACAAGTTA ATTTGACATTTATTATGGAAGTTGATAAGTGATATCAGTTTCAGCAGGCG TTAGAGATACATCCCATGAACGTACAAAAATCCATGCTAAAAGAATGGAA GTaagttttggttgatttttttaagACCGAACTGTTTGTTTATTACTTTA ATGTCTTGCAAGGAGCTGTAAAACCTATGTAATGTTAGCACCGTTGGACA AACATATTTTGAaccatttcaagaaaaattcgGTCGATCAAACATTGTTG AATGTTGTTGATTAATGTTTGTTTTGACTGGTCAAATAACCATTATCAAC TATTGACTCTTCCCGGTTCAGGAGTTTTGCATAATGGTTTAGAAGCGAGT TATGAAGATTGAGATGTTGCTTATGCGACAATTGATGTCATTGTGTTGAC AAAGTCCCCAGAGGGATTGCGGTTAATCATTTCCAAGCGCACGGAGGACG CAGTTGAATTAAAGCCTGTTGACGTAAGAGCAAAAGATGCAGGACCTTga ttttaatcaaaagaaaaggctggaagatttgataaaaaagaatgaGAACC TTTTTGCCAACTCGGACTTAATGCTTGGCACTACCCACTTGATGGAGTAT GACGTTGATACAGGGGATGCAGTGTCTATACAACTACACCGGCAAAGCGT GCGGAGATTGACAAACAAATGTTGGTTGAAACCCCAATAATAAGATCCTC AAAGAGAAGTAACTTGACGTTCATAGTAGACGACCAAGAAAGGACATTCA AGATTGACGCGGAAGGATTTGTTGAAGAAACTCCAATGCACTTAAGTTCC CTGGACGGTACCCATAGTGATCAGGAGATAAAGGGCAAGGTTGGTGATCA CTTGAGTATCATATTGAAGGAAAAACCAAGCCTCCCTCCAGTCACAATAC AAGATGTGGTTACAAAATCGTACGAGGTGATGAACGAACTTGGATGGGCA TATGAAGATTTGAGGCCGAAAGACAAACACCAAGTTGGGATTTTCGCTGC CATTGCCCATCAGCTAGGAGAGATTTTGTCTAGCTTTGGACCTTCCAGAA TTATCTCGTCATTGGGAGACACCATTAAGGGTACGGTGGAAGGTGTATGA CACGCTGGCTCAGATCTAGTTGGAGCGATAGGAAACGCAGTATCCGAGAC CATTAATTCAACTGGAGATGCGGTGAATCAAGTAGAGAGTTAATTTTTAA GTGTAATCAAGGCATGGTGGCCAATTATTTTTGGAGGTGGACTGTTACTC CTGTTGATTGCCATATTGTCCGATGTCTACAAGAGTTATGGTTACCGTAA AAGATCAACAAGCCGCAACGTTCCAGTTTACGAATCACCAACAGATAGAG CTATTAATTAGAGAATAGAACGCACCATGGGTCATGCCATAATTGCTGCA TTGTCCGAAACAGATAGTAAAGCGACAGAGGAGCGTGCGATTGCTCGTGG TGGTTGGATTCCCACTTATGATCGTCGTCAAGATGTCGTTTCAGTAGCAA CCAACCCATATCAAAACTTGTCGCTCTATGCTGCGATACCAAACCATATG CCTCGAAGAAGGCGAAGTCTCGTAAGATCTAAATCTTGTTAGCGAATCTC T

Coding sequence (CDS) from alignment at sc0000063_pilon:1638884..1645134+

>XLOC_030899 ID=XLOC_030899|Name=XLOC_030899|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3336bp|location=Sequence derived from alignment at sc0000063_pilon:1638884..1645134+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGAATTACACCTTCTTTTTCTACCGACCACtaaaAAGAATTACACCTTC
TTTTTCTACCGACCACtaaaACCTACTAAGTATTGTAGGCCTTACGTTGG
TAGCAAACTTGATTGGTCCACGGTCATGATATATTACGAGCATGAGTATA
GGAAGGAAGCATTCAGGGAGCTTGGGAATTTTACTGCAAGACGTCTTGAG
AATTACGTGATAATTCCTGAAATAGGTGTGGCAGGGCATGTCTCGCGAAT
TTATGACCTTTCCAATGAAACTCCGTTCAAGGCGTTTCCTGCTGGTGAAA
TTCCAATACTGTATCAGTTAGATAATGGGTATGTTGTTTTCGAGTTTGGA
GATGGCATTACTGCAAGAGAGGTCGATGAATTTCCAGAATTATGGAGATT
TTCAGAGGAAAGTTCGGCACTCGGAACTGTACCGATCATTGAAGGACATT
TGGTGAGCCAGATGTTGAACCTAAAGTTAGCTTCTACAAATGAGAATGAG
CAGATTTGTGAGCTACAAGCTGAGCAGGAAAAACTGTACACAAGGATTCT
TCAACATTTCCCCTCAACGGCAAACTTATGGGTCAAACGTGGAAGAAATG
TGGTAGCAAAACCACTGGGTGATGCTATGGTATTAAAGGAATGTGATCTT
GTCCAGAATTTTACAACAGTTTGGTCACGTCGAGTAAATAAAACGTGCTA
CTTACATTGTGCTTTGCAACGTCCCGGCTCCTAAGAAATTGAAGGGTTTA
TGGACTTGACTAACAGGCAGGGGCTGACGTCGAGTCCGAAAATTCGATGT
TCGGAGCGAAACAACCTTACCTATAGTGTCGACGATCTCGAGGGAACATT
CAAGGTCGATGCGCTTGGAAATACTGAAAGGGTTTCCCAACCACTGAATT
CTCTCTATGATACTTATAGTTTCCAAGAAATAAAAGACATTGTTGGAGAC
CATCTAAACATCATTCTGAAAGAAAGGCCAAGCTTTCCCCCTGTTGTCAT
ACAGGATATTGTCACCAAATCATACGAGGTAATGAACGAAATTGGATGGG
CATATGAGGACGTAAAGCCTAAAGACAAGCACCAAGTTGGAATTTTTGCT
GCCGTCGCCCATGAACTGGGAGAGATTTTGTCTAGCTTCGGTCCTTCCAG
AGTTATCTCGTCCTTGGATGACGCCATAAAGGGAACAGTGGAAGGTGTAG
GACACGCTGGTTCAGACTTGGTTGAAGCAATAGGAAACGCAGTGTCTGAG
ACCATCGATTCAACTGGAAGCGCGGCGAATCAAGTTGAAAGTTGATTCGC
AGAAGTGATCAAGGCATGGTGGTCCATTATTCTTGAAGGTGGACTTTTGG
TCTTGTTGATTGCCATATTGGCCGTTATCTACAAGACTTATGGTCACCGT
AAGAATTCGACAACCATCAGTGCCCCGAACCTACTAAGTATTGTAGGCCT
TACGTTGGTAGCAAACTTGATTGGTCCACGGTCATGATATATTACGAGCA
TGAGTATAGGAAGGAAGCATTCAGGGAGCTTGGGAATTTTACTGCAAGAC
GTCTTGAGAATTACGTGATAATTCCTGAAATAGGTGTGGCAGGGCATGTC
TCGCGAATTTATGACCTTTCCAATGAAACTCCGTTCAAGGCGTTTCCTGC
TGGTGAAATTCCAATACTGTATCAGTTAGATAATGGGTATGTTGTTTTCG
AGTTTGGAGATGGCATTACTGCAAGAGAGGTCGATGAATTTCCAGAATTA
TGGAGATTTTCAGAGGAAAGTTCGGCACTCGGAACTGTACCGATCATTGA
AGGACATTTGGTGAGCCAGATGTTGAACCTAAAGTTAGCTTCTACAAATG
AGAATGAGCAGATTTGTGAGCTACAAGCTGAGCAGGAAAAACTGTACACA
AGGATTCTTCAACATTTCCCCTCAACGGCAAACTTATGGGTCAAACGTGG
AAGAAATGTGGTAGCAAAACCACTGGGTGATGCTATGGTATTAAAGGAAT
GTGATCTTGTCCAGAATTTTACAACAGTTTGGTCACGTCGAGTAAATAAA
ACGTGCTACTTACATTGTGCTTTGCAACGTCCCGGCTCCTAAGAAATTGA
AGGGTTTATGGACTTGACTAACAGGCAGGGGCTGACGTCGAGTCCGAAAA
TTCGATGTTCGGAGCGAAACAACCTTACCTATAGTGTCGACGATCTCGAG
GGAACATTCAAGGTCGATGCGCTTGGAAATACTGAAAGGGTTTCCCAACC
ACTGAATTCTCTCTATGATACTTATAGTTTCCAAGAAATAAAAGACATTG
TTGGAGACCATCTAAACATCATTCTGAAAGAAAGGCCAAGCTTTCCCCCT
GTTGTCATACAGGATATTGTCACCAAATCATACGAGGTAATGAACGAAAT
TGGATGGGCATATGAGGACGTAAAGCCTAAAGACAAGCACCAAGTTGGAA
TTTTTGCTGCCGTCGCCCATGAACTGGGAGAGATTTTGTCTAGCTTCGGT
CCTTCCAGAGTTATCTCGTCCTTGGATGACGCCATAAAGGGAACAGTGGA
AGGTGTAGGACACGCTGGTTCAGACTTGGTTGAAGCAATAGGAAACGCAG
TGTCTGAGACCATCGATTCAACTGGAAGCGCGGCGAATCAAGTTGAAAGT
TGATTCGCAGAAGTGATCAAGGCATGGTGGTCCATTATTCTTGAAGGTGG
ACTTTTGGTCTTGTTGATTGCCATATTGGCCGTTATCTACAAGACTTATG
GTCACCGTAAGAATTCGACAACCATCAGTGCCCCGATTTACGAATCACCA
ACAGATAGAGCTATTAATTAGAGAATAGAACGCACCATGGGTCATGCCAT
AATTGCTGCATTGTCCGAAACAGATAGTAAAGCGACAGAGGAGCGTGCGA
TTGCTCGTGGTGGTTGGATTCCCACTTATGATCGTCGTCAAGATGTCGTT
TCAGTAGCAACCAACCCATATCAAAACTTGTCGCTCTATGCTGCGATACC
AAACCATATGCCTCGAAGAAGGCGAAGTCTCGTAAGATCTAAATCTTGTT
AGCGAATCTCTTTTACGAATCACCAACAGATAGAGCTATTAATTAGAGAA
TAGAACGCACCATGGGTCATGCCATAATTGCTGCATTGTCCGAAACAGAT
AGTAAAGCGACAGAGGAGCGTGCGATTGCTCGTGGTGGTTGGATTCCCAC
TTATGATCGTCGTCAAGATGTCGTTTCAGTAGCAACCAACCCATATCAAA
ACTTGTCGCTCTATGCTGCGATACCAAACCATATGCCTCGAAGAAGGCGA
AGTCTCGTAAGATCTAAATCTTGTTAGCGAATCTCT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_030899XLOC_030899-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063_pilongenomesc0000063_pilon:1638884..1645134 +
Properties
Property NameValue
Aaloc1606-1656:6201
Aaloc1396-1605:5979
Aaloc37-1392:403
Aaloc1-33:1