XLOC_029542 (mRNA) -

Overview
NameXLOC_029542
Unique NameXLOC_029542
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000366_pilon:200483..204647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029542 ID=XLOC_029542|Name=XLOC_029542|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4165bp|location=Sequence derived from alignment at sc0000366_pilon:200483..204647- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCTAAAAAACCAAGTGAAAAATCAAAATCTACTGATGGTGGAACTAC
TTCTGGAAATGAAACACTAACTGTTACTTACGAGCAGTTGAGAACTCTGG
TTAACGATGTTGTTGAAAAAGACTTTGGCCCACAAATCATGAAAAGCACC
AAAGACACAGTGAAAGCTGCTTCTGTGCAATCTGCTGAGAATCATTCGAC
CAATCTGGCTAAGCTCAAAAAGAAACTCGAAAGAAAGAGAGCCAACGACA
ACATCGTACTCAAGAAAACCGGCCATCAAGATCAATTTGCTCATAATACA
GCAGTCTTGGAAACGATTGAGGATACCCTCGAATTCATGGAAGAGACGGA
TGTTGATGGGATGAAAGAAGCTTTAAATAAAGGTAAGAGATTACTAGAGA
CTCGTATTCAACATATTAGAATCGCCGACACACACGGGTGGCTTACTGTC
AACGAATTTAAGACAAGCGATCTTACCTCCGGAGACGTGGAAGAAAAAAG
GCTTAAGAGGGCTATTAAAAACGCAGAGCAAGTTAAACAACGTATTTATA
AAAAGCCAAGAATAGAGGAACCTAATAGAGAATACTCCAAGGCAATCAAA
TCTAGAACTGAACAAAGGAGCCGTATGGATGAGGTGGTATGTTATTCATG
CAAAAGAGTAGGACACTACGTCAGCCACTGTCCTTTTCCTGCATCTTCGT
CACCTTTGGCCTACTCGACAAAATTAATGTCCTCATCAACAGCAACAAAA
AGTTCATCGTCCAATTCAAATTCTAAATCGTCAAGGGATGGAAAATAACT
TTAACAAAAAATATAAAATTTCAGAACATTCTTTTTCAACTTTTGAAATA
CAGTAGCTATTTTACATTGCGTTAGTTTTTAAAAATTGATTACAATTTTG
TCTTGTTGTAATTAGATTAGTATTGATCTGAGCTCATAATATAAATGATC
TAACTTCTCTCCTTCGTTTCGCTAAATTACCTCAATTATATATAAATTGT
TTTGATTCCTCCACTTTGATTTATACAGAAAACGTTTCGTTTTACTTAAT
TAATTTTCTTTGAAAGACTGTTAAGCCATTTGTGCTTTCTTTTCATTGCA
TCACATTTTCGTTTGATACCACTACAGACCGATTTTGGGAATTCGAACAA
TCTGCTGAAAGTATCTCCGTCGCCGGAAAGATTCAAAAATTTTCAGAATT
TTGGGAAAAAGACTTGAAAGCATCCAACTTCGCCTTGAATATCGTACACG
AAGGATACAAAATACCTTTCGAGTCAGAACCACCAAAATTTTTCGCAAAA
AACAACGCTTCCAGTCTAAAAAATCGAACTTTCGTTACGGATAGTATCAC
ACAACTTTTAAAGGACGATTGCATCAAAAAAGTCGACGAACCGCCTCATT
GTGTTAATCCTTTGACTGTTGCAGAAGGAAACTCAAAACTAAGACTCGTT
CTGGACCTTAGACACGTCAACAGATATATCAAGCCAAAAAAGTTCAAGTA
CGAAAACTTAAAACAGGTTTCAGAACTCACGAACAAAAACGACTTTTTAA
TTACTTTCGATCTTAAGAGTGGGTATCATCACGTTCCAATCAATCCAGAT
TTTCAAACTTTTTTGGGATTCGCCTGGGACATCGACGGCAAAAGACAGTA
TTTCGTATTCAAAGTCTTACCATTTGGGCTCAATATAGCATGCCTAGTGT
TTACAAAGCTTATGCGACAGCTTGTTAAAAGATGGCGCTCTATGGGAATC
AAATGTGCAATGTATCTCGATGATGGTATAATTGGGAATAATTCTTATAA
TTCCCTGATTACAATGAGAGATCTAGTGCTAAACGACCTACAATCTGCAG
GGCTGACCGTTAACTTTACAAAGTCGAGTCTAGTACCCGGGCGTACAAAA
ACTTGGTTGGGTTTTGAAATAAATACAGTCGATATGAACTTTGAAGTGCC
AGCATCAAAAATTCAAAAACTTTTGAAATTAATTTCACAAGCATTAGAAA
ACGAATTTCTATCAGCAAGAGAAGTTTCCAGAATCGCAGGCAACCTTATT
TCCATGGCAATCGCAATAGGCCCGCTTGTCTATTTGCTTACAAAACAAAT
GTACAAATTCATAGCTTCAAGTTTCTCTTGGGATAAAAGGCGATTAATAA
ATTTTGACGTTATTCAAGAACTTCAATTTTGGCAAACCAATTTAAAAAAC
GTAAAAGCTTTTAGAATTAAAACCAAACCAGAAATTACGAAGATCATCTT
TTCGGATGCAAGTGGTACCGGCTATGGAGGTTACGTGGTAGAAAAGTTAG
GAAACATCATAGCAAAAGGAAATTTTTGTAAACAAGAAATACAAACTAGC
TCAACTTTTCGTGAACTTCTTGCAGTTAAATATATTTTGATGTCCTTTCC
TAAACTTCTCGAAAACGAAATAATTGAGTGGTTCACGGACAACGATAATA
TTTGTAAAATAATCAGCCGCGGTAGTACAAGACAACACCTACAAAATCTT
GCAATAGAAATTTTCAACCTCTGCTTATCCCACAACGTCGAAATTTACCC
TACTTGGATACCAAGGGACATGAATAAAACAGCAGATTTAATTTCCAAAT
CTATGGACACAGATAATTGGTCTATCGATAATGAGACTTTTAATCACATA
ATCAAAAACTATGGACAAATTACCATAGATCGATTTTCCGATAACCAAAA
CGCTAAGTCAACTGTTTTTAATTCTCGTGAGTATTGTCCAGGAACATCCG
CCGTCAACGCTTTTTCCTGTAATTGGGGAAACAATGAGTTCAACTGGCTT
TGTCCTCCAATATCCCTCGTGGGTAAGACAATTCAGCATCTGAAAAATTG
TAGAGGTAAAGGCATATTACTTGTTCCATTGTGGCCTTCTTCTTACTACT
GGCCATTGCTGACATCGAACGGCAAAGAATTCGAAGTTTTTGTGAAAATG
TTTTTAGTACTCGACCCTTATTATATCAATTATTCTAACACAAAATGTAT
ATTTGACGGATTTGCAGGCTTCTATTCTGTAGCATTATATATCGATATGT
CCCAATAAATATTCAGTATTATTAAATTCCTAGTTATATCTCACTATTAC
CCCATCTAACACACTCATTTTTCATTCTTTTTATGTTGACAAACTTGGTT
ACATTTGCAAGATTTATTACATCACGATCAACGTTACACGTGGTGTGTTT
TATGTGCCAATGCCTCTGTGCAAACACGTCTTTCGCGTCAATGTCTCTGT
ACAAACGTATTTGAGGAGTTCGTTCTCCATCTTGAAGCCCATCGTCTTAC
AGATGGCAAAGTGCAAAGGTACGAAATTAACTATTTTTTTTATTTCATTT
TTCGACAGATCATGCCCCCCCCAAGTTTGAAAGAAAAACTCGCAACAATT
AGGAACGAAAGTTTGAAACAAAAAGCCGAAGGTCTTCCCGTTTTATTAGA
ATCAGCTTACGCCAAATCCACTTTGAGGAAGTACAAACCTGCTTGGGAAA
AATGGGTGTCTTGGGCTGGTCCATTCGACGAGGTAAACTGTTGTCCTGCC
GACCCTTTTTACGTAGCGGTATATCTAAACGATCTTACGAATTCACTTGC
AACCGAAGGAACATTGACCGCAGCTATTCTAGGAATCAGATGGGGGCACT
TAACCTCAGGATTTGAATCTCCGACCGATCATTCCCTTGTTAAATTAGCA
CTAGAAGGAGGTAAGAGAATAATAGCTGAGAAAAATTCTATTGGAGGGAA
AAGACGCAGAAAAGAACCCTTATCATCAGATATTATCAAAAGTCTAGCGG
AAACATACGCCACATCAAGTAATCTTTTGGATATTCGTTTTACCCTAATG
GTTATATTAGGATTTGCAGGTTTTTTCAGAATCAGCGAAATGCTAAGGAT
TCAGACCAAAGATTTAACTTTCGATCAAACGGGCGCAACTATTTTTCTAC
CCATATCGAAAACCGATCAACAACGCCAAGGTAATCTCGTTTTTATCAGT
AGAACAAAATCCAAATCCTGCCCAATCCACTGGCTCCGTAAATATTTATC
ACTTTCCGGGCTGAGATACAAATCAGAAGCTTACTTATTTTGTCGCCTTT
ACAAAACGAAATCTGGTCATAATGCACATGGTCATCTCCCCATATCGTAC
TCCACAGCCTTATCA

Coding sequence (CDS) from alignment at sc0000366_pilon:200483..204647-

>XLOC_029542 ID=XLOC_029542|Name=XLOC_029542|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2016bp|location=Sequence derived from alignment at sc0000366_pilon:200483..204647- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCTAAAAAACCAAGTGAAAAATCAAAATCTACTGATGGTGGAACTAC
TTCTGGAAATGAAACACTAACTGTTACTTACGAGCAGTTGAGAACTCTGG
TTAACGATGTTGTTGAAAAAGACTTTGGCCCACAAATCATGAAAAGCACC
AAAGACACAGTGAAAGCTGCTTCTGTGCAATCTGCTGAGAATCATTCGAC
CAATCTGGCTAAGCTCAAAAAATGTCTAAAAAACCAAGTGAAAAATCAAA
ATCTACTGATGGTGGAACTACTTCTGGAAATGAAACACTAACTGTTACTT
ACGAGCAGTTGAGAACTCTGGTTAACGATGTTGTTGAAAAAGACTTTGGC
CCACAAATCATGAAAAGCACCAAAGACACAGTGAAAGCTGCTTCTGTGCA
ATCTGCTGAGAATCATTCGACCAATCTGGCTAAGCTCAAAAAGAAAGAAA
AACTCGCAACAATTAGGAACGAAAGTTTGAAACAAAAAGCCGAAGGTCTT
CCCGTTTTATTAGAATCAGCTTACGCCAAATCCACTTTGAGGAAGTACAA
ACCTGCTTGGGAAAAATGGGTGTCTTGGGCTGGTCCATTCGACGAGGTAA
ACTGTTGTCCTGCCGACCCTTTTTACGTAGCGGTATATCTAAACGATCTT
ACGAATTCACTTGCAACCGAAGGAACATTGACCGCAGCTATTCTAGGAAT
CAGATGGGGGCACTTAACCTCAGGATTTGAATCTCCGACCGATCATTCCC
TTGTTAAATTAGCACTAGAAGGAGGTAAGAGAATAATAGCTGAGAAAAAT
TCTATTGGAGGGAAAAGACGCAGAAAAGAACCCTTATCATCAGATATTAT
CAAAAGTCTAGCGGAAACATACGCCACATCAAGTAATCTTTTGGATATTC
GTTTTACCCTAATGGTTATATTAGGATTTGCAGGTTTTTTCAGAATCAGC
GAAATGCTAAGGATTCAGACCAAAGATTTAACTTTCGATCAAACGGGCGC
AACTATTTTTCTACCCATATCGAAAACCGATCAACAACGCCAAGGTAATC
TCGTTTTTATCAGTAGAACAAAATCCAAATCCTGCCCAATCCACTGGCTC
CGTAAATATTTATCACTTTCCGGGCTGAGATACAAATCAGAAGCTTACTT
ATTTTGTCGCCTTTACAAAACGAAATCTGGTCATAATGCACATGGTCATC
TCCCCATATCGTACTCCACAGCCTTATCAGAAAGAAAAACTCGCAACAAT
TAGGAACGAAAGTTTGAAACAAAAAGCCGAAGGTCTTCCCGTTTTATTAG
AATCAGCTTACGCCAAATCCACTTTGAGGAAGTACAAACCTGCTTGGGAA
AAATGGGTGTCTTGGGCTGGTCCATTCGACGAGGTAAACTGTTGTCCTGC
CGACCCTTTTTACGTAGCGGTATATCTAAACGATCTTACGAATTCACTTG
CAACCGAAGGAACATTGACCGCAGCTATTCTAGGAATCAGATGGGGGCAC
TTAACCTCAGGATTTGAATCTCCGACCGATCATTCCCTTGTTAAATTAGC
ACTAGAAGGAGGTAAGAGAATAATAGCTGAGAAAAATTCTATTGGAGGGA
AAAGACGCAGAAAAGAACCCTTATCATCAGATATTATCAAAAGTCTAGCG
GAAACATACGCCACATCAAGTAATCTTTTGGATATTCGTTTTACCCTAAT
GGTTATATTAGGATTTGCAGGTTTTTTCAGAATCAGCGAAATGCTAAGGA
TTCAGACCAAAGATTTAACTTTCGATCAAACGGGCGCAACTATTTTTCTA
CCCATATCGAAAACCGATCAACAACGCCAAGGTAATCTCGTTTTTATCAG
TAGAACAAAATCCAAATCCTGCCCAATCCACTGGCTCCGTAAATATTTAT
CACTTTCCGGGCTGAGATACAAATCAGAAGCTTACTTATTTTGTCGCCTT
TACAAAACGAAATCTGGTCATAATGCACATGGTCATCTCCCCATATCGTA
CTCCACAGCCTTATCA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_029542XLOC_029542-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000366_pilongenomesc0000366_pilon:200483..204647 -
Properties
Property NameValue
Aaloc223-1008:787
Aaloc1-219:4166