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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000312_pilon:5615..13215+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_024655 ID=XLOC_024655|Name=XLOC_024655|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7601bp|location=Sequence derived from alignment at sc0000312_pilon:5615..13215+ (Clytia hemisphaerica_ch_hm2_pilon)
CGTAAAGAGTACAAAACGTACACACTAAAACGACAGTTGATCTCTTCATA
TAATATCTTCTTATGTGAAGAAAAGATTTACCATCTGGTCTGTAAATCTC
TCGGAAAAGAATGCTACAAACACAAGAAGTATGATGTTTATTTTCTCAAT
GTTTTCTATAGAGCGTACAAATTTCTTTTAGGATTTGTTCCTGGGTCTTC
CATGGCACAAAGCATTGTGTTTATTTTCAAAGTGGTAGATCCAAGCTAGC
GGTTTTCATAGAAAAGGCTTATACACGCAGCCGAGGGAGGCTCCCCCGAG
CGGGTAGGGGTGCTGAGGTAAAGCAGGCTACGAGTGTACGTGCAAGCTGT
AAGGACACCTTTTTAGACCTTTGTTTCGTTCGACGAGCGAGTGttttttt
CAAAGTCACACtgtatataaacaaaaaaaatgaaacgcATGTGCTcttcg
aacttttttcttcctccttctttttgttttgattttaaaaaaagtctagt
cacaacattctttaaaatttcgaatgtttttatcttCATTCGAACGTTTT
GAAGAGATTCGAATGttatgaaaaacatttgaacGTCAGTATTTcttcat
ttatttattatttatttattatttgatGAACAGTTATCAGATGTTTCAAT
GAATAAAATATTCTTCGATGAATAAAATTGCACTTGATAATTCGAAAAAT
TACATTAGACCAACTCACTTCAGAAACATCCCGCACGTTGGTCTATCTGA
TCTGGCTTTCTGAATATTGACATTAAAAAACAGCCATACTCTACAGTAGC
ATTCATTTCTTTTTGGAATGACCAAagttgtcttctttttttcttgaaca
gGGAGCCTGTACCAGTTATGTAGTCATTCATTTTTGGAATGACCaaaatg
ttcttcttttttcttaacaGGGGCCTGTACAGggcattttctttttgaat
gaccaaaattgtcttctttttttcttgaacagGAGCCGTACCAGTTATGT
AGTCATTTCTTTTTTGGAATGACcaaattgtcttctttttttcttgacaG
GAGCCTGTACCAGTCCATGACCaaaattgtcttctttttttctggaCAGG
GAGCCTGTACAGTTATGTAGTCATTTCGTTTGGAATGACCAAttggtctt
ctttttttctttgtaccCATTTCTTTTTGGAACCAAAATTGTCTGGAACA
GGGAGCCTGTActttttttcttatgtgtaattttccttttttggatgacc
aattgtcttctttttttcttgaacagGGAGCCTGTACCAGTTATGTAGTC
ATTTCTTTTTGGAATGACCaaaattgtcttctttttttcttggacAGGGA
GCCTGTACCAGTTATGTAGTCATTTCTTTTTGGAATGACCaaaattgtct
tctttttttcttgaacagGGAGCCTGTACCAGTTATGTAGTCATTTCTTT
TTGGAATGACCaaaattgtcttctttttttcttggacAGGGAGCCTGTAC
CAGTTATGTAGTCATTCATTTTTGGAATGACCaaaattgtcttctttttt
tcttgaacagGGAGCCTGTACCAGTTATGTAGTCATTTCTTTTTGGAATA
CAAagtttgtcttctttttttcttgacaGGGAGCTGTACAGTATGTGGCA
TTTTTTGGAATGACcaaattgtcttctttttttcttgaacagGAGCCTGT
ACCAGTTATGTagtatttctttttttggaatgaccaaaattgtctctttt
tttcttgaacagGGAGCCTGTACCAGTTATGTAGTCATTTCTTTTTGGAA
TGACCaaaattgtcttctttttttcttggacAGGGAGCCTGTACCAGTTA
TGTAGTCATTTCTTTTTGGAATGACCaaaattgtcttctttttttcttgg
acAGGGAGCCTGTACAGTTTTagtcagtcattttcttttggaatgaccaa
aattggtttcttttttttcttgaacaggGAGCCTGTACCAGTTATGTAGT
CATTTCTTTTTGGAATGACCaaaattgtcttctttttttcttggacAGGG
AGCCTGTACCAGTtatgtaataataataataataataataataacgaaTG
TTTTAAGTGGCTGGCTCCGAAGAATTCTAGAGCTTTTAGACAGCTCAAGA
ATTGTTTCCACGAAGGGCCACTACGAACAGAACAAGAACAGTAACAAAAA
GGAACaggaaaattggattttaaatAATTGGAGAATTAGGTGAAGAAATG
TTTTCTTGCTCTACTCTTGAAAGACACAATCGATTCAGCATCACGGCATT
CCTGGTAGGTATTCCAGATAGGAATGTAGAGCTTGCGTAGTCATTCATTT
TTGGAATGACCAAagttgtcttctttttttcttgaacagGGAGCCTGTAC
CAGTTATGTAGTCATTCATTTTTGGAATGACCaaaattgtcttctttttt
tcttgaacagGGAGCCTGTACCAGTTATGTAGTCATTTCTTTTTGGAATG
ACCaaaattgtcttcttttttcttgaCAGGGAGCCTGTACCAGTTATGTA
GTCATTTCTTTTTGGAATGaccaaaattgtcttttttttcttgaacaggG
AGCCTGTACCAGTTATGTATTCttttttttGAGACCaaaattgtcttctt
tttcttggaCAGGAGCCTTGGACGAGCTGTACCAGTTATGTAGTCATTTC
TTTTTGAATGccaaattgtcttttttttcttgacaGGGACCTGTACCATT
ATGTAGTCATTTCTTTTTTGGAATGACCAAAGGTCTCtttttttCTGAAG
GAGCCTGTACCAGTTATGTAGTCATTTCTTTTTGAATGAccaaaattctt
cttttttttctggcAGGGAGCCGTACCAGTATGTAGTCATCATTTTTGAT
ATGACCaaaattgtcttctttttttcttgaacagGGAGCCGTCCCAGTTA
TGTAGCATTTCTTTGGAATGACCaaaattgtcttcttttttcttgaacag
GGAGCCTGTTTAGTAGTCATTTCTTTTGGAATGACcaaattgtcttcttt
tttcggACAGGGAGCCTGTACCAGTTATGTAGTCATTTTTTGGAAtgacc
aaaatttcttcttttttcttgaggGAGCCTGTACCAGTTATGTAGTCATT
TCTTTTGGAATGacaaattgtctttttttttcttgacagGGAGCCTGTAC
CAGTTATGTAGTCATTCATTTTGAATGACcaaattgtcttcttttttttt
cttgaacaggGAGCCTGTACCAGTTATGTAGCTTCTTTTTGGAATGACAA
AATTGTCTCTTTTTTCTTGAACAGGAGCCTGTACCAGTTATGTATCATTT
CTTTTTGAATGACCaaaattgtcttctttttctGGACAGGGAGGCCTGTA
CCAGTTATGTTCATTTCTTTTTGGAATGACcaaatgtcttctttttttct
ggaCAGGAGCCTGTACCAGTTATGTGTCTTCATTTTGGATGACcaaattg
tcttcttttttcttgaacagGGAGCCTGTACAGTTATGTAGTCATTTCTT
TTGAATGACcaaattgtcttctttttttcttggacAGGGAGCCTGTACCA
GTTATGTAGTCATTTCTTTTTGGAATGACCaaaattgtcttctttttttc
ttggacAGGGAGCCTGTACCAGTTATGTAGTCATTTCTTTTTGGAATGAC
CaaaattgtcttctttttttttggacaGGGAGTGTACCAGTTATGTAGTC
TTTCTTTTTGGAATGACCaaaattgcttcttttttcttGACAGGAGCCTG
TACCAGTTAGTAGTCATTTCTTTTTGAATGACcaaaatgtcttctttttt
tcttgacaGGGGCCTGTACCAGTTATGTAGTCATTTCTTTTTGGAATGAC
AAAttgtctcttttttttcttggaCGGGAGCCTGTACCAGTTATGTAgtc
attttttttggaatgaCCAAAATTGTCTCTTTTTTCTGGACAGGGGAGCC
TGTACCATTTATGTATCATTTCTTTTTGGAATGACCaaaattgtcttctt
ttttcttgaacagGGAGCCTGTACCAGTTATGTAGTCATTTCTTTTGGAA
TGacaaaattggtcttttttttCTTGGACAGGGACCTGGACCAGTTAGGT
GTCATTTCTTTTGGATGACaaaattgtcttcttttttattgGAAAGGGAG
CCGTACCAGTTATGTAGTCATTTCTTTTTGGAATGACCaaaattgtcttc
tttttttcttggacAGGGAGCCTGTACCAGTTATGTAGTCATTTCTTTTT
GGAATGACCaaaattgtcttcttttttcttgaaGGGAGCCTGTCAGTTTA
TGTAGTCATTTCTTTTTGGAATGACCaaaattgtcttcttttttttcttg
gaCAGGGAGCCTTACCAGTTATGTAGTCATTCTTTGGAAGGACcaaaatg
tcttcttttttttcttggaCAGGGAGCCTGTACCAGTTATGTAGTCATTC
TTTGGATGACCaaaattgtcttcttttttcttgaCAGGGAGCCTGTACCA
GTATTAGTGGAATCAAAAGTTCTTTTTGGAATGACcaaaattgtttcttt
ttttcttggacAGGGTAGCCTGGACCAGTTATGTAGTCATTTCTTTTGGG
AATGAccaaattgtctttttttttcttgacagGGAGCCTGTACCAGTTAT
GTAGTCATTTCTTTTGGAATGACCaattgtcttctttttcttgaacAGGG
AGCCTGTACCAGTTAGTAGtcatttctttttggaaaaaattgtcttcttt
ttcttgaaaGGGAGCCTGTACCAGTTATGTGTCCTTTCTTTTTGGAATGA
CcaaaattgtcttatttttttcttgacaGGGAGCCTGCAGTTTTAGTCTT
CTTTTTGGAATCtttttttCTTGGACAGGGAGCTTGTACCAGTTATGTAG
TCCTTCTTTGGAATGACCaaaattgtcttcttttttcttgaacagGGAGC
CTGTACCAGTTATGTAGTCATTTCTTTTTGGAATGACCAAAATTGTCTTC
TTTTTGTACTTGTAACGGTAGCTGTCCCAGTTTAGGTAGCATTCTTTTGA
TGACcaaattgtcttcttttttcttggACAGGAGCCTGTACCAGTTATGT
AGTCATTTCTTTTTGGAATGACCaaaattgtcttcttttttcttgaacag
GGAGCCTGTACCAGTTATGTAGTCATTTCTTTTTGGAATGACCaaaattg
tcttctttttcttgaacGGGAGCCTGTACCAGTATGTAGTCATTTCTTTT
TGGAATGACCaaaattgtcttcttttttcttgaacagGGAGCCTGTACCA
GTTATGTAGTCATTTCTTTTTGGAATGACCaaaattgtcttcttttttct
tgaacagGGAGCCTGTACAGTATGTAGTCAtttttttGGATGACcaaatt
gtcttcttttttcttgaacagGGAGCCTGTACCAGTTATGTAGTCATTTC
TTTTTGGAATGACCaaaattgtcttctttttttcttggacAGGGAGCCTG
TACCAGTTATGTAGTCATTTCTTTTTGGAATGactaaaattgttttcttt
ttcttggacAGGGAGCCAGTACCAGTTATGTAGTCAATTCTTTTTGGAAT
GaccaaaattgttttctttttttcttggacAGGGAGCCTGTACCAGTTAT
GTAGTCATTTCTTTTTGGAATGaccaaaattgttttctttttttcttgga
cAGGGAGCCTGTACCAGTTATATTGTCATTTCTTTTTGGAATGaccaaaa
ttgttttctttttcttggacAGGGAGCCTGTACCAGTTATGTAGTCAATT
CTTTTTGGAATGaccaaattttttcatttttttcttggaCAGGGAGCCTG
TACCAGTCAGGACGGTAAACAAAGATCTGAAGAAGGAGATCGAGAAGTGT
CTTTCGAGCACCATGCTTAGAGTTGGACATGGACCAAGCAGGTAAGTTgt
gatgaaacatttttaacgtTTCTCTTGAAATAATAatacctcgttgaaaa
gatcATATCCGAAAATAGACTTTTGGATTGGTGGATAATTCAAGTCAGTG
GTATATAcggggtgtcccgaaaaaatgtatcgagtcgtaccacttctata
gaaagaaagttatcgtgtgtttcactaaatttgcaatgtttatcaaagtt
tctctttgtgtcatattaattgtcatgagacatcttttatgaataacttt
tacaaaaaataattttcaataactttaacgtcgtgaaaattgtaaagaaa
gttaattaatgactgttgtaaaaacaattattgtgtttgtatatattttc
ttacattttgttaaacacacgcaacaaccttctacttcttttcgggacac
cctgtagtagACTACCGCCGTGCTCAACAGAAAGTGTATAGTGATTATAT
AAATCACTTTTGCCTTTTTCACAGGCgtgatttttttgcaaattcccACG
CGTGTGATATGAGTGTGAATCACAATCACGAAATTTCAACACGCTTTAAC
ACGCGTGTGATTtggtttttcttttggtctAAAAGATCTGAGAAGTGTGA
TCTGGTGTGACCACGTGTTATCATGGAAAGTGACGTCATTGGCTACCATA
GCAACCAATataaaagtttgaaagtttggaaaaaatttaCACCAATCGAA
AGACCACGAAAAACTAAAATGGTGATAATATAAGAGGAACCCGATGACGT
CAAGTGCTTGAAATTTTAAGCCTGGTTTTTGCGGCACAACAGTCTTCACT
GATAACTGTCAATACTTTATCAGAATCTTTTGTTATAGCATGTTTTATGA
TCTGAGTATACAATTCAAAAGTTTACTTTTAATTACCTCAAGcggggaac
taatttttgctttaaacaatctttaatatttttgtttttgttttcgtttt
tgtttcaGTTCCATTTTGGTGGGTCAATTGAATGAGCACAAGGAAAAACA
AATGGTTGAAAATTTGTTGCATGCCATGCGAATCGTCGGTCAGAAGGTAC
CAGGCAAGTGGAACAACATCAAATCTATGTATCTCAAAACATCGACTTCA
GTTGCTCTTCCTTTGTACCAAGCGTCACCCGTTGCAACCCACGATCTTAG
TGACGTCAAAGTCGACGTCGAAGAGAAGCAACGCAAGCGTAAACGTAAAG
CGACGCCGTCCATCAAAAATACCAACCTCGATGAAGTCAAGAGCGATGAT
GAAGGACAACATGAGGACCAGAATGATAAAACGGAAGACGTTGTATTGGA
CGGTGAGAAGGAAAATGAAGTCACTCCATTGGGAAATGAAGACATCGAAG
AAACTAATCCTGCTGTCGAGGAACAGAAGACAGTTGTTGccaaaaacgaa
aaacatcTGAGATCTTCCaaagtcaagaaagcgaaagtcgaagagggaaa
agaagaaggaaaactcgtcaaaaagagaaaggtgaagaaagTTACTACGC
TATCAGAAGAAGAAATCGAGAGTGTTCCGAAAACAAAAAAGACACCCAAG
AAAACACTACCTGCCAAAAAGACTGGCCCAAGGAAAGTCAAATCTAAGTA
G Coding sequence (CDS) from alignment at sc0000312_pilon:5615..13215+ >XLOC_024655 ID=XLOC_024655|Name=XLOC_024655|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1740bp|location=Sequence derived from alignment at sc0000312_pilon:5615..13215+ (Clytia hemisphaerica_ch_hm2_pilon)
CGTAAAGAGTACAAAACGTACACACTAAAACGACAGTTGATCTCTTCATA
TAATATCTTCTTATGTGAAGAAAAGATTTACCATCTGGTCTGTAAATCTC
TCGGAAAAGAATGCTACAAACACAAGAACGTAAAGAGTACAAAACGTACA
CACTAAAACGACAGTTGATCTCTTCATATAATATCTTCTTATGTGAAGAA
AAGATTTACCATCTGGTCTGTAAATCTCTCGGAAAAGAATGCTACAAACA
CAAGAAGGAGCCTGTACCAGTCAGGACGGTAAACAAAGATCTGAAGAAGG
AGATCGAGAAGTGTCTTTCGAGCACCATGCTTAGAGTTGGACATGGACCA
AGCAGGGAGCCTGTACCAGTCAGGACGGTAAACAAAGATCTGAAGAAGGA
GATCGAGAAGTGTCTTTCGAGCACCATGCTTAGAGTTGGACATGGACCAA
GCAGTTCCATTTTGGTGGGTCAATTGAATGAGCACAAGGAAAAACAAATG
GTTGAAAATTTGTTGCATGCCATGCGAATCGTCGGTCAGAAGGTACCAGG
CAAGTGGAACAACATCAAATCTATGTATCTCAAAACATCGACTTCAGTTG
CTCTTCCTTTGTACCAAGCGTCACCCGTTGCAACCCACGATCTTAGTGAC
GTCAAAGTCGACGTCGAAGAGAAGCAACGCAAGCGTAAACGTAAAGCGAC
GCCGTCCATCAAAAATACCAACCTCGATGAAGTCAAGAGCGATGATGAAG
GACAACATGAGGACCAGAATGATAAAACGGAAGACGTTGTATTGGACGGT
GAGAAGGAAAATGAAGTCACTCCATTGGGAAATGAAGACATCGAAGAAAC
TAATCCTGCTGTCGAGGAACAGAAGACAGTTGTTGccaaaaacgaaaaac
atcTGAGATCTTCCaaagtcaagaaagcgaaagtcgaagagggaaaagaa
gaaggaaaactcgtcaaaaagagaaaggtgaagaaagTTACTACGCTATC
AGAAGAAGAAATCGAGAGTGTTCCGAAAACAAAAAAGACACCCAAGAAAA
CACTACCTGCCAAAAAGACTGGCCCAAGGAAAGTCAAATCTAAGTAGTTC
CATTTTGGTGGGTCAATTGAATGAGCACAAGGAAAAACAAATGGTTGAAA
ATTTGTTGCATGCCATGCGAATCGTCGGTCAGAAGGTACCAGGCAAGTGG
AACAACATCAAATCTATGTATCTCAAAACATCGACTTCAGTTGCTCTTCC
TTTGTACCAAGCGTCACCCGTTGCAACCCACGATCTTAGTGACGTCAAAG
TCGACGTCGAAGAGAAGCAACGCAAGCGTAAACGTAAAGCGACGCCGTCC
ATCAAAAATACCAACCTCGATGAAGTCAAGAGCGATGATGAAGGACAACA
TGAGGACCAGAATGATAAAACGGAAGACGTTGTATTGGACGGTGAGAAGG
AAAATGAAGTCACTCCATTGGGAAATGAAGACATCGAAGAAACTAATCCT
GCTGTCGAGGAACAGAAGACAGTTGTTGccaaaaacgaaaaacatcTGAG
ATCTTCCaaagtcaagaaagcgaaagtcgaagagggaaaagaagaaggaa
aactcgtcaaaaagagaaaggtgaagaaagTTACTACGCTATCAGAAGAA
GAAATCGAGAGTGTTCCGAAAACAAAAAAGACACCCAAGAAAACACTACC
TGCCAAAAAGACTGGCCCAAGGAAAGTCAAATCTAAGTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000312_pilon | genome | sc0000312_pilon:5615..13215 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1159-1254:7506 |
| Aaloc | 610-1155:6960 |
| Aaloc | 511-606:5894 |
| Aaloc | 382-507:1 |
|
