XLOC_016641 (mRNA) -

Overview
NameXLOC_016641
Unique NameXLOC_016641
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000063_pilon:1513294..1520099-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016641 ID=XLOC_016641|Name=XLOC_016641|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6806bp|location=Sequence derived from alignment at sc0000063_pilon:1513294..1520099- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACTTCGTATTCCGTATTTCTTTTGATTGCAACCTTCCTTTTTCACCT
TTCCATCGACAGTCAAGTTAATGGTGAACAACTAAATCCAGCAGGGTAAG
ATACTTCGTGATAATCTTTAGGCTGTATTCTACTGTAGAGTGTTTTTAAC
TCGAATAGGTTTTATGGTCCCTTCTGTTAGTTTATAAATCATCCTCACAT
AATTTGCTTGACTCGAACAAAGTTTTATTTCCCGTGCGTGTTCAGTTGTA
AAGGTGAAAGTTGTCGATTTTACCACGAGTGGAAAAATTGAGTCTCCAAG
GCGTTCCGCCATATGTTGTAAGAATTACCAGAAGTTTTAATGCACGGTGC
AAAGGAAAGATGCTGCATCTTTTTGTTTTTGATAAAATATAGGTCGTGTG
ATCAGTGATTTTTTATTTTTCTCTTTAGGTTGAATGTTTGTGAGAGCCTA
AAGATACAATCTTACTACGGCCAACAAACAAGATCCAGGACTGCATACAG
GGCCACTTATTTCTGCTGCAAGTCTGGCAGCCAAGGAGGATGTGACCAAT
ATTGTTATAGATCAGGGTAATTCGCATGGCCTAAATTTGGTTTTCCTTTT
AATTGAACAGGCAAATATTTAACCATAAATTGGGATGAAGTTGGATGGAG
TTTTTATAAGATACTTCACTAATTAGTCATTTGAAATAATAGAGATGACG
CGTTCTTTAGATAAAGTAACAAAATTGTTTTATTACACGCTAACGACCAA
CCAAATCAAATAAAAGCTTGTAAAAACTCCAGCTTGACCCCATAGATTAG
CGAGATTATGTATCGGAGATATTCTACGGCTACGGTTGCAGGGCTGCCCG
TACGGGTCGTCACCAAAGGCGAGAGGTCGTTGTCTACTTTGCTCTGTATG
GGACAACACCAAAACACCGTATAAGCAAAGTCGACATAATGTCGTACGTC
AAATATCGAACTTGCTTTCACCCGCCATTACTTGCCTTACTCGCCATTTC
TCATTTCTATACAAGCCGCGTATTCAAAAGATGTGCTCATTATTTCATTT
TCCAGCTCATATCCAACATACTACTCAACACCTCAAATATTTTACAGACA
AGTAATGCAATATTCTTGTTGTGAAGGATTCCAACAAGTCGGAAATGAAT
GCCCCGATCGTAAGTTTTTAGAAATATTTCTATCCATCAGTGTCTTAGTG
TATTGAGCATATCGTGGGCTGTAACAAGGAACCCTAAGCTAACCCTAAGG
CATAAAAAGTATTTAATAGCACCGATATTTTAATTTTTTCTGTTAGAAAA
TAGAACAGGGAAGTTTTTTGCAACGGAGACGATTGGATTCTGATGAGTTG
AGGACGATGGTAAATCAGCACTCTTACCGTCCCCGAATTCTTGGGTCAGA
TGAAATGGCTTCTTTAAAATCGCTTCAGTCCATCCTTACAATAACAAATA
CATCAACTCGCTAATCGTATCTGAGCCATGGTCCAATATCGATTCATACA
GACATTATCTCTCTCCCTCAGATTTTTCAAGAGTTAGTCAAAAAATAAAG
AAGATTTATTTTGGCAAGTTTTACAGTTTTTTAAGTTTAGCTTTTGATTG
AAGATTACAATTTAAGTAGGATGTATTGATTTTACTTTGGTCCTTCTGGT
TCGGAAAATTTCGCCGTCCATTTGGTGGCATTTGATCAAAGTAAGCTCTA
GTTTAGACGGCCCACTTTTTGCCCTGCCTATTCTAATTGTGAATTAAAGA
GGGCAGAAAGTGGGCTGTCTAAAGTGATGCATAGCCCTCTTTTGACGTCA
GTGCAATGTCTTCTTCCAAACCTTTCCAAGCAAAGATTTTAACAACCAAC
TTTGTGCCCTCTTTCTGCCTACTCTAACAATTAGAATAGGCAGGGCAGAA
AGTCGGCGGTCTAAACTAGAGCTAAGATACATGACCTCTAGTCATAGTCT
AGTAATCTTAAAAAGCTTTGCTTGAATAATAATAGGTAAGCCTTTGGTTT
TCACTCTTTTGATAAAACTAAAAAACAGTATTATCATTTTTGTATAACAG
TGCAGTAGTTGATAAGAAAATAAACTCATTCAAAGTTCAGAGTGTTATGG
TACGAGGTATAGGATATTGAAAAATCGTAACTGGTGGTTTTATTATGGTT
TTAAGAGAAAACTTATGAAATTGTTGAACGTAATATGCATAGATATGTAT
TACAATTGAAGCAATAAAGTGTTGCTGTGGTGCGGTCCTGATAAACCATA
GCGGATAAAGATCAGTATTGTGGAGAGTTCTTAAGGGTCAAACAAATTAT
AACCTGATAACAGATGGCCATAATTTTCTTACACGCACGGTAAACCTTCT
GAAGGCACTTGAAAACTAACTGTCTGAAGAAAATGACCAATCTTGTCAAG
TGCTGCGATGTCAAAAATCAAACTCTTTTCCTGATACAGCACCCTGTTTC
TAACAACAATCACACAACTCTGCTGTCATTCCCAGGCCCTTGAAACGAGT
GCAGTCCTTAAAAAATCCGAGATCGTTTACTATTCGCACATCCGTTTGGA
GTTTTAGCGTGGTGTGCAGAAAACAATGATTATTAGGATCGATCTGAAAT
AGGAAAAGACTGAGTAAGATATAACGTGATAATTGAATCTTAAAATGTGG
GGTAGGACATTTGATAGATTTTAGAACATCTAATATTGTAACTTACATAA
ATATCTTAACTCAACCATCTTTTAAGGGAAGTGGCACATCTCGTTCTTGT
TTGATAATATATCACGGGAATTGTCATAGTTCGAAAAACTAACCTATGCT
TTCAGAGCATAGAGAAGTCTAACAGAATCTTCAAAGAGACTCATTTGAAA
AGACATGTGCTCAAAACCTTGGTGGGAAAGTTACCCGGGATTGATTTTTG
TTAAAAATTATAACAAATGCTAAATTTAATACACATTTTTATAACTGAGT
GTCGAAGCCACCAGTTTGTGAGCATTTTTGTGCAATTTCTAAAAGATTTA
ATGTTCTTGCCTTTTTTAAATATGTTTGTTACCAAAGCCTTGCGTTCTCA
TACAGTTGTTACTTATAGAAAACGTTTAGTTGCATACAATGATAAATTTG
CTCTTTATTTCCAAACGTAAATTTTAGCAATCACATCTGTTGGGAGTGGT
TCCGGTGGGAGCGGTTCCGGTGGAAGTGATTCCGGTGGAAGTGGTTCCGG
TGGAAGTGGTTCTGGTGGAAGTGGTTCTGGCGGAAGTGGTTCCGGTGGAA
GTGGTTCCGGTGGAAGTGGTTCCGGTGGAAGTGGTTCCGGTGGAAGTGGT
GGTGCCGCTGGTGGCGCATCATCCGTAAATACCACTGTATCCGGGAATGC
CACCGTATCGAATACCACTGTATCCGGGAATGCCACCGTATCGAATGCCA
CCGTATCGAATACCACCGTATCGAATACCACCGTGTCCGGAAATGTCACC
ATAGCTGCAAGAGCCTCCGTTTCTGGGAATGAGCCTAAAAATGCTTATGA
TAAAGGTATGTTATCAAAATGATGGATTATTTTTCATACAGTCAAATCGA
TCAAGGGCATAACGGTTTAAACTCTAAGGTAGAACGTGAGTTAAGAAAAA
ACGTAAGTTGTTAAATAGAACATATCGTCTTAATTTCTCGTCAATACAGT
AGTAGTTAATGTTTTATGGTTGAGCATTCTTTTGCGAATTGAGATTAAAA
GTTTTACAAAGATAAAACCAATAGAAAAGAGTTCTTGAATTCCCAAGTCG
ATGAAATGACGAATTTTTCAACTTTTTCTCGAAGGGAAATCTGCACAAAT
TGGTGCATTTTCCCCTTTAAAATGAATAGAAATTGGCATGTAACAGATGC
ACGAATCCTATGAAATAAGCTATCGAGAGAGCACGACTGTGACATTTGGT
GGTATCTTTACGATTGGATAGTATTTTTAGGGAAGATTTTAAAACTGTAA
AGGCTTGGGGTTCACGAGAAGTTTTTTTTACGTCGGTGCAATGCAACATG
CTCCATCCAACCAACCTGAAACGTTTTCTCGTGTCTCCACCACATTTTTC
TTTTAATAACATTTGTGCTTCTCTCAATTTTGTCCCTGGGACAAAATCAG
CGTGTCTTTTGGGTCTTTTTCTCACTTTTTGTCCCATGAAACAAAAAAAA
GAAACCATGAGACACGCGCTTTTTTTCTTGTGTTGGTGGGTTGGAGCATG
TTGCATTGCACCAACGCGAAGGATCAAATATGGATAACTCGGAAAAGGAA
ACTCTTTTCTTGTTTTTTTCAGATTTCGACGTCACGTGCGATGATACTCA
CATGGTTGTTTGGTTCAACAAGACTGCATTGGATGAGCGAGACAAAGGTC
ATATTAACAATCGCACATGGCAAATCTACTTCGAAGGGAAACGAGGTGAT
GACATTTGTTCAACATACATTTGGGATTCTTCCAAAACAGCTTCAACATA
TGAAAATATGAACAAAACAGAGTTCTTCACATCGACGGTTCTTCTTGGTG
CACCAATTAACAATTGCGGAATAAACCGATTCGCTGACGCTACACATATT
ATCTACAACGCCACAGTTATTGTGACGTACGGTGAAAATCCGAACGACTT
CATTAGACGTGAAGAATACGATAAATACAACGTCATGTGTTTGAGAAATC
GAACTGTCGTCGAAGAGAGCACATTGTCGATTCAATATCGTCAAACCGGG
AATGACGGAAAGAGTAAGTTATTAGTTTCTTTTCTTAGTGACGTGATCAT
GTCGAAGTTGAATCTCGCTAATTCAAAATCGAACGGGGAATACTATTTAT
GCAAATCGCAGAGACATTCGAGTTACAGAGAGTATTTCAAGAGGGTTTAA
TGGAGCGATGGCCAAGTGGTCAAAGGCGTCAGCGTCTCAAACCAGGGGTT
TGCAGATCGCCAATCTCCGCTCCTTCCAATTTTCCGTTCAGTTCATAGAT
AACCGAGCCGGCTGGCCGTGAACCCCTTGAAAACAATCGAAAGACTGTCT
AAAAGTCCTAGATTACTGGGCTATTCACGTAAAATATCGACTCTATCTAT
CTATCTATCTAAGGTACCAAGGAATGAGTTCGAATTATAAAGAGATTCGA
GAAATAGAATAAGCGAATAAGCGAGTATATACAAAATTCAACTTTGATCA
TTTTACACGTCTTTCAGTTTCAATCTCTTTATATGACCGTTGGAGAAGCT
TCGAATGAACAATCAGACTAATTTTAGCGAGTAACAAATTTAACTGAAAG
CGAAATATAACTGTTTTTTTGCACGATTGATCTCTACACTGAATCTTCCA
TACCTTTCATGTAGACGCTACGGAGGATTTCACTTTCACTTTCGGCCACA
CCGATATGTCAGACACACCGCAAAGTCTGTACAAAGTTGGACAATATATC
AAATTCACAATGACGTCACTAACTGTACGATCTGAAGTGAAGGCTGTCAT
TCAAAGATGTTGGACAACCAATGGTGATGGATCTACAAACCCTTATTATT
TGATCCAAAACAGGTAATTTTTCAAAAACAATAAGACAAAATTCACATAC
AATTGACGCTCTCTAATTCGATTTTCAAGGGACATTGTACTTTCATCGAA
TTTAAAAATCTATTAAATAGTAGAACGTTGTTTATTATGAGAGTTTTTTG
ATGACAGGAACTTTCAATATAATCGGAAAACAGAGCGTATCGTTGGTCTC
CAACTCGACCAACGATACGCTCCGTTTTCCGATTATGCGTTAACGAACGA
AGTCGCTTTTTTCTGCTATTAACATATAACAGTAACCATAGCATATACAA
TCTCGGTCAAAATATATTGAGAATTTTGGTTAATTTCTGGTTTTTAGCAG
TTTTTTCGGGCGAGAAAGTCGCTTTTGGGCTAATTCATAAATTTATTTGA
ATATTTCAATCCGAGATGACGAAGCACATTGTAAGGATGTATTCAGCCCT
AAATACACTCAACTCTAAAAAATATATTCCATTCAAAATGTATTATTTTT
ATTGAATATTTTCTTAAAGATGTAATTTGGAAGGAGGAACGAGCTGGGTA
TCTCTACCATCTGACACAGTTTCTACATTCAAAACTGAAGCCTTCAGATA
TCTGACCAGTGGTGCTACCAGTAATATCCATGCTCAATGTCTGGTCCGTG
TCTGCCTGGACACTCAATCAAACGAATGTACACTTTGCACGCCATCTATC
AACCTTAAGAGGCGTGAAGCTGTTGAAGATAGCACGGACACAAACCTGGG
AGAAATGGTTCTTGTTAAAACGAAAAATTTCAAACTCTTCGAGCAAGGTT
TGCCATTTTACTTAAACTTTTTTTATATAAGAACATCCGAAATTTTTGAA
GCCTTTTTGTTCTTAACCTTTTGAGTTTTAAATGTTCTCAATTTCACCAT
TTGTGAATATTTTTGTAAATTTTCCTTAGAAATTTGTGGTGTTTAGAATG
AATAAACCTTTAAAATGTTCTTAAGTTGTTCTTAATACTTTTGCCATCGA
AATCTGATGTTCTTATATAATTTGTTATTATAGAAAAACGTGTTTTCGGT
GCCCTTTTTGGTTGCCGCTCATTAACTTTGACAGTGCAGTGAAAAATATT
ATGTTTTCCTTTTAGAATTATCTCCGGAGCAGCAAGAAGCGTCGCATGTG
TTGAGCGGAACGAATGGGTTGCTTGTCATTGTCGGGCTGGCCATCTTTGT
TGTCACCGTTTCTATGGTAATCGTCAAAAAAGTGTTTATCAACTGCAAAA
CAAATTCTGTGGCGGAGTCGGTTGATTCAAGGAGTAGTGACGAGGTTGAT
GCATAA

Coding sequence (CDS) from alignment at sc0000063_pilon:1513294..1520099-

>XLOC_016641 ID=XLOC_016641|Name=XLOC_016641|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3618bp|location=Sequence derived from alignment at sc0000063_pilon:1513294..1520099- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACTTCGTATTCCGTATTTCTTTTGATTGCAACCTTCCTTTTTCACCT
TTCCATCGACAGTCAAGTTAATGGTGAACAACTAAATCCAGCAGGATGAC
TTCGTATTCCGTATTTCTTTTGATTGCAACCTTCCTTTTTCACCTTTCCA
TCGACAGTCAAGTTAATGGTGAACAACTAAATCCAGCAGGGTTGAATGTT
TGTGAGAGCCTAAAGATACAATCTTACTACGGCCAACAAACAAGATCCAG
GACTGCATACAGGGCCACTTATTTCTGCTGCAAGTCTGGCAGCCAAGGAG
GATGTGACCAATATTGTTATAGATCAGGGTTGAATGTTTGTGAGAGCCTA
AAGATACAATCTTACTACGGCCAACAAACAAGATCCAGGACTGCATACAG
GGCCACTTATTTCTGCTGCAAGTCTGGCAGCCAAGGAGGATGTGACCAAT
ATTGTTATAGATCAGGCTCATATCCAACATACTACTCAACACCTCAAATA
TTTTACAGACAAGTAATGCAATATTCTTGTTGTGAAGGATTCCAACAAGT
CGGAAATGAATGCCCCGATCCTCATATCCAACATACTACTCAACACCTCA
AATATTTTACAGACAAGTAATGCAATATTCTTGTTGTGAAGGATTCCAAC
AAGTCGGAAATGAATGCCCCGATCGGAGTGGTTCCGGTGGGAGCGGTTCC
GGTGGAAGTGATTCCGGTGGAAGTGGTTCCGGTGGAAGTGGTTCTGGTGG
AAGTGGTTCTGGCGGAAGTGGTTCCGGTGGAAGTGGTTCCGGTGGAAGTG
GTTCCGGTGGAAGTGGTTCCGGTGGAAGTGGTGGTGCCGCTGGTGGCGCA
TCATCCGTAAATACCACTGTATCCGGGAATGCCACCGTATCGAATACCAC
TGTATCCGGGAATGCCACCGTATCGAATGCCACCGTATCGAATACCACCG
TATCGAATACCACCGTGTCCGGAAATGTCACCATAGCTGCAAGAGCCTCC
GTTTCTGGGAATGAGCCTAAAAATGCTTATGATAAAGGGAGTGGTTCCGG
TGGGAGCGGTTCCGGTGGAAGTGATTCCGGTGGAAGTGGTTCCGGTGGAA
GTGGTTCTGGTGGAAGTGGTTCTGGCGGAAGTGGTTCCGGTGGAAGTGGT
TCCGGTGGAAGTGGTTCCGGTGGAAGTGGTTCCGGTGGAAGTGGTGGTGC
CGCTGGTGGCGCATCATCCGTAAATACCACTGTATCCGGGAATGCCACCG
TATCGAATACCACTGTATCCGGGAATGCCACCGTATCGAATGCCACCGTA
TCGAATACCACCGTATCGAATACCACCGTGTCCGGAAATGTCACCATAGC
TGCAAGAGCCTCCGTTTCTGGGAATGAGCCTAAAAATGCTTATGATAAAG
ATTTCGACGTCACGTGCGATGATACTCACATGGTTGTTTGGTTCAACAAG
ACTGCATTGGATGAGCGAGACAAAGGTCATATTAACAATCGCACATGGCA
AATCTACTTCGAAGGGAAACGAGGTGATGACATTTGTTCAACATACATTT
GGGATTCTTCCAAAACAGCTTCAACATATGAAAATATGAACAAAACAGAG
TTCTTCACATCGACGGTTCTTCTTGGTGCACCAATTAACAATTGCGGAAT
AAACCGATTCGCTGACGCTACACATATTATCTACAACGCCACAGTTATTG
TGACGTACGGTGAAAATCCGAACGACTTCATTAGACGTGAAGAATACGAT
AAATACAACGTCATGTGTTTGAGAAATCGAACTGTCGTCGAAGAGAGCAC
ATTGTCGATTCAATATCGTCAAACCGGGAATGACGGAAAGAATTTCGACG
TCACGTGCGATGATACTCACATGGTTGTTTGGTTCAACAAGACTGCATTG
GATGAGCGAGACAAAGGTCATATTAACAATCGCACATGGCAAATCTACTT
CGAAGGGAAACGAGGTGATGACATTTGTTCAACATACATTTGGGATTCTT
CCAAAACAGCTTCAACATATGAAAATATGAACAAAACAGAGTTCTTCACA
TCGACGGTTCTTCTTGGTGCACCAATTAACAATTGCGGAATAAACCGATT
CGCTGACGCTACACATATTATCTACAACGCCACAGTTATTGTGACGTACG
GTGAAAATCCGAACGACTTCATTAGACGTGAAGAATACGATAAATACAAC
GTCATGTGTTTGAGAAATCGAACTGTCGTCGAAGAGAGCACATTGTCGAT
TCAATATCGTCAAACCGGGAATGACGGAAAGAACGCTACGGAGGATTTCA
CTTTCACTTTCGGCCACACCGATATGTCAGACACACCGCAAAGTCTGTAC
AAAGTTGGACAATATATCAAATTCACAATGACGTCACTAACTGTACGATC
TGAAGTGAAGGCTGTCATTCAAAGATGTTGGACAACCAATGGTGATGGAT
CTACAAACCCTTATTATTTGATCCAAAACAGACGCTACGGAGGATTTCAC
TTTCACTTTCGGCCACACCGATATGTCAGACACACCGCAAAGTCTGTACA
AAGTTGGACAATATATCAAATTCACAATGACGTCACTAACTGTACGATCT
GAAGTGAAGGCTGTCATTCAAAGATGTTGGACAACCAATGGTGATGGATC
TACAAACCCTTATTATTTGATCCAAAACAGATGTAATTTGGAAGGAGGAA
CGAGCTGGGTATCTCTACCATCTGACACAGTTTCTACATTCAAAACTGAA
GCCTTCAGATATCTGACCAGTGGTGCTACCAGTAATATCCATGCTCAATG
TCTGGTCCGTGTCTGCCTGGACACTCAATCAAACGAATGTACACTTTGCA
CGCCATCTATCAACCTTAAGAGGCGTGAAGCTGTTGAAGATAGCACGGAC
ACAAACCTGGGAGAAATGGTTCTTGTTAAAACGAAAAATTTCAAACTCTT
CGAGCAAGATGTAATTTGGAAGGAGGAACGAGCTGGGTATCTCTACCATC
TGACACAGTTTCTACATTCAAAACTGAAGCCTTCAGATATCTGACCAGTG
GTGCTACCAGTAATATCCATGCTCAATGTCTGGTCCGTGTCTGCCTGGAC
ACTCAATCAAACGAATGTACACTTTGCACGCCATCTATCAACCTTAAGAG
GCGTGAAGCTGTTGAAGATAGCACGGACACAAACCTGGGAGAAATGGTTC
TTGTTAAAACGAAAAATTTCAAACTCTTCGAGCAAGAATTATCTCCGGAG
CAGCAAGAAGCGTCGCATGTGTTGAGCGGAACGAATGGGTTGCTTGTCAT
TGTCGGGCTGGCCATCTTTGTTGTCACCGTTTCTATGGTAATCGTCAAAA
AAGTGTTTATCAACTGCAAAACAAATTCTGTGGCGGAGTCGGTTGATTCA
AGGAGTAGTGACGAGGTTGATGCATAAAATTATCTCCGGAGCAGCAAGAA
GCGTCGCATGTGTTGAGCGGAACGAATGGGTTGCTTGTCATTGTCGGGCT
GGCCATCTTTGTTGTCACCGTTTCTATGGTAATCGTCAAAAAAGTGTTTA
TCAACTGCAAAACAAATTCTGTGGCGGAGTCGGTTGATTCAAGGAGTAGT
GACGAGGTTGATGCATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_016641XLOC_016641-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063_pilongenomesc0000063_pilon:1513294..1520099 -
Properties
Property NameValue
Aaloc1621-1809:190
Aaloc1342-1617:787
Aaloc1144-1338:1491
Aaloc703-1140:2533
Aaloc340-699:3663
Aaloc235-336:5751
Aaloc97-231:6378
Aaloc1-93:6807