|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000342_pilon:161594..165277+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_016580 ID=XLOC_016580|Name=XLOC_016580|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3684bp|location=Sequence derived from alignment at sc0000342_pilon:161594..165277+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAAAATCAAATGATTGTTACAGGAAGAAAAATTCCACGAAAGTTCGT
CATTTCAGTAAGTCAGTCATTACCTTTCGTTTGGCTTTGTATTGGTTTTA
TGATAAAATATTCCTTTTTACTTGGACTTGTTTTCAATAAATCTcgtact
tttttcattttaatgttCATTTACAACGTGCCATTCACAATTTCTATCTG
TTCCTTGTTGGAAAGGTAATCGCTAATAGAGAGCAGAACATTATAAACTA
AACCCGTGAATTTGTGCGAGCCATCTCAAACAGCGCTCTTGTGGTGTTTT
AGCCTTTAATTCTCATAATTTAATAAggttttatagaaaaaatgttGACT
TGCAATAACATTATAAAATCATACTGAAAGTGGTGTTGATAAAATTATAG
tctttattttttacaaacatatatTTATGATTTGATTTAATTCACTACAG
CAGATTTAAAAACTGTAAAAATTTCAGtgacatttcttttttgaaattat
cttttGGATTGTTAGTTGTTGAGGTGAGAATTTCAACTTAAATTGTCAGA
CaaaaaaaTGTGCTCATATCTGTTGTTATGGGTGAATATTTAGACATTTC
CTTcatttttaacacccccttctcacagacccaccgAGACCCCTCCCACT
GGAGATATTGGTGAAAATATCGTCCTCAGTGACAAattatactttatttt
ttgtacccactgaaaaaaatcagataagcaaatcctcactgcaaaatatt
gcaCTATTTTTTGCATCCCACTGCATTTTTTAGCTCGAAAACGATGGAAT
TCATATCCCTATatccataaaaaacatggaaatatcaatcccgatcgagt
tttggtccgtgaTTTTTACCCTCCACTAACTGAAAGAAATCAtaccggat
ctgtgagaagggggtgcttTCTATCAAGGAAAATATTTGGGTCCTATGAT
CATTGTTAGTGTTTGGGATTAGAATATGACAAAAGTTGTCCGCCTGTCTA
CCTGTCTACATTTTGCTTGTCTAGAACACGTAGGGCTATTCTTGTAGATT
TTTATAAATGGTCAGAATCTGCTTAAATTTTATAGATGCATCTGTTCTTT
GGATAAATAATTAAGATATGAAGTATGCTGTActcagaaatattttgaaa
aagatttgagGATTTTCCCATAATACTACCCAGCAACATTTCATCAGGCA
TCTGAACTATCAAGTATATATTGTGTACAGGGAACTGATTTTAGATACAA
TCTAGTGGGAAGTCAATACTAATGCTATTGATATTACTTTACTTGTCATA
TGAAACTTCTATATCTACGTCTTGTATAACTGTTtctaaatttgaacaaa
atttgaacaaaaaaagttttgtaaagTTTGATGACATCCAGAAATGAATA
AAACTGACAGacattgaatttatttttgattaaatgtCGTAAGATATTAT
GATTttccaaaatgaaaatgttaGCATGTTCTAGCAAGCCTAAACTTAAA
TGAAAGTTAATCTTCAAACTAAGATGTTTTTAATTCGATTGTGATTTGAA
ATTGGGTAAATTCATCGCATTTTTCGCAAAAACAAGCTTCCTAGAAAaga
tttaacaatttttcacataaaaatttcttaaatcgTGGTTGCATCTAAAT
TGGTACGTAGAATAGAAATATTTTAGGCAGGGTATAATTTTCAAACGCGA
AAAGATGGCTATAAGAATTATGATTTAAATTCTCTAGAGAACAGTACCCT
CCGAGAATGAAGTAATCATATCAAttcagggtgtccggaaaagaGTATCG
AGTCAAAACTTAACAAACGTTTTTATctgtattcacaaaattatattttg
agttaaataaaagtcaaagttaaatgaaaaaagaaaataaaagtaaataa
aaaaaataaaattaaagttAGATTAAAGGCTGACATTCCCCTAAATAGTT
GACCAGAAATCCCAAACAGCAAACTTAAGCTATTATGTGCCTCATCGGTC
ATCGGACAAAGAAATgcacaaaattaaatcaaaggGGCCTCGAAAGCGTG
ACAAATTGAAgtagtaaaaatAAaaaaagggaaaatttacaGTCTCTTGT
TATCATTTATTCAACGAAACTTTAAGGGGTCAACGTTCTCTTATAAAACT
TTACCTATCAAATTCTcaattttcacatcaaaataGGCGcccgaaaaaaa
agattttttagtaCTATTGTGTGACTATCATACTGTAAACTTAACCCTAG
TTGAcctttacaaaacaaaaaaaaattgttcaaactTTGAGAAGTTCCAT
GACTGAGGTTGTCACACCTCATAAACAAGTGAAGTGCTATGTAAGATGAA
ATATACagtatgtttttataagaacattttaaaagtcTCTTCATTTGAAT
CTTGCTACTTTCTATGAACACTTTGAGAATGTCTTATTCTTAGATATTCT
TAGTTCATGGGCTACCATGCCTCTGCATTTTGTAGAAGCTTAAGATTCTA
TATTGTTCTTATTATGATGtttttaaattccattgttcttataaaaactt
gcGTTGTACACAATACGTTTTGTAATgacaattctttttgttttcgtcac
atttttgatcaaaaaaacaatttttgacaacaaatttttgtatatatttc
ttTTTGACAAGGGATAAGAGATAAGATTTCTTAAATTTCATTTCAGATTT
AATGACAGTGCTGTACGCCTGGGGTGTAGATtccagttaaaaaaaaatac
tgtttttgtttctttattaAAGATGGATCAATCGCAACATATGATACCAT
CTTACTTGGATTTCAATAACAATAATGGCGCCGCTGCAACCAATCACCAA
CCATCAGTTGCAAGTTTTACTCCGGAGCAAGTGGCATGTGTTTGTGAAGT
TCTTGAACAAAGTGGAAATTTCGATCGCTTGGCCCGTTTTCTTTGGTCAC
TACCAACCTATGATGATATTTATGCTAATGAAGCCGTTCTGGTTGCAAAA
AGCGTGGTCGCATATCACCAAGAAAACTTACAAGAATTATATCATATTAT
AGAGAATAACACATTTTCACCCATCTATCATCCTAAACTACAAATGTTAT
GGTTGAAAGCTCATTACACGGAAGCCGAGAAAATTCGGGGACGTCCACTC
GGTGCTGTTGGGAAATACCGCGTCCGTCGTAAATATCCGTTACCGCGTAC
CATTTGGGACGGTGAAGAAACGTCATACTGCTTCAAGGAGAAATCAAGAG
TCGTCTTACGTGATTGGTATGCCCGTAATCCGTATCCGTCTCCACGTGAA
AAGAAAGAGCTTTCAGAAGGAACTGGTCTATCAACAACGCAAGTCTCAAA
TTGGTTTAAAAACCGTCGACAACGAGACCGCGCGGCCGAAGTAAAAGAAC
GCGAGGACGAAcatgagaaaaaatattatcgTGAGACATGGGAGAAACAG
CAAACTGAGTTAGTACACCGTAGCGCTTTACTGAAACCATCTAGTAATAA
CTTTTCAAGTGAACACATTGCTGCTACTATTTTATCACAAAGTTTAGGAG
CAAACAACCAACACCAACCGGCATTTAACGTACCGCTGATCAATTCATCA
GTAATCCGAACCAAAGATGAAAACATTCCTGACGGCTATGGTAAAAAACA
ACCTTCAGATTTCGATGTTTTGTCGAACATGTGA Coding sequence (CDS) from alignment at sc0000342_pilon:161594..165277+ >XLOC_016580 ID=XLOC_016580|Name=XLOC_016580|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1938bp|location=Sequence derived from alignment at sc0000342_pilon:161594..165277+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAAAATCAAATGATTGTTACAGGAAGAAAAATTCCACGAAAGTTCGT
CATTTCAATGGAAAATCAAATGATTGTTACAGGAAGAAAAATTCCACGAA
AGTTCGTCATTTCAATGGATCAATCGCAACATATGATACCATCTTACTTG
GATTTCAATAACAATAATGGCGCCGCTGCAACCAATCACCAACCATCAGT
TGCAAGTTTTACTCCGGAGCAAGTGGCATGTGTTTGTGAAGTTCTTGAAC
AAAGTGGAAATTTCGATCGCTTGGCCCGTTTTCTTTGGTCACTACCAACC
TATGATGATATTTATGCTAATGAAGCCGTTCTGGTTGCAAAAAGCGTGGT
CGCATATCACCAAGAAAACTTACAAGAATTATATCATATTATAGAGAATA
ACACATTTTCACCCATCTATCATCCTAAACTACAAATGTTATGGTTGAAA
GCTCATTACACGGAAGCCGAGAAAATTCGGGGACGTCCACTCGGTGCTGT
TGGGAAATACCGCGTCCGTCGTAAATATCCGTTACCGCGTACCATTTGGG
ACGGTGAAGAAACGTCATACTGCTTCAAGGAGAAATCAAGAGTCGTCTTA
CGTGATTGGTATGCCCGTAATCCGTATCCGTCTCCACGTGAAAAGAAAGA
GCTTTCAGAAGGAACTGGTCTATCAACAACGCAAGTCTCAAATTGGTTTA
AAAACCGTCGACAACGAGACCGCGCGGCCGAAGTAAAAGAACGCGAGGAC
GAAcatgagaaaaaatattatcgTGAGACATGGGAGAAACAGCAAACTGA
GTTAGTACACCGTAGCGCTTTACTGAAACCATCTAGTAATAACTTTTCAA
GTGAACACATTGCTGCTACTATTTTATCACAAAGTTTAGGAGCAAACAAC
CAACACCAACCGGCATTTAACGTACCGCTGATCAATTCATCAGTAATCCG
AACCAAAGATGAAAACATTCCTGACGGCTATGGTAAAAAACAACCTTCAG
ATTTCGATGTTTTGTCGAACATGTGAATGGATCAATCGCAACATATGATA
CCATCTTACTTGGATTTCAATAACAATAATGGCGCCGCTGCAACCAATCA
CCAACCATCAGTTGCAAGTTTTACTCCGGAGCAAGTGGCATGTGTTTGTG
AAGTTCTTGAACAAAGTGGAAATTTCGATCGCTTGGCCCGTTTTCTTTGG
TCACTACCAACCTATGATGATATTTATGCTAATGAAGCCGTTCTGGTTGC
AAAAAGCGTGGTCGCATATCACCAAGAAAACTTACAAGAATTATATCATA
TTATAGAGAATAACACATTTTCACCCATCTATCATCCTAAACTACAAATG
TTATGGTTGAAAGCTCATTACACGGAAGCCGAGAAAATTCGGGGACGTCC
ACTCGGTGCTGTTGGGAAATACCGCGTCCGTCGTAAATATCCGTTACCGC
GTACCATTTGGGACGGTGAAGAAACGTCATACTGCTTCAAGGAGAAATCA
AGAGTCGTCTTACGTGATTGGTATGCCCGTAATCCGTATCCGTCTCCACG
TGAAAAGAAAGAGCTTTCAGAAGGAACTGGTCTATCAACAACGCAAGTCT
CAAATTGGTTTAAAAACCGTCGACAACGAGACCGCGCGGCCGAAGTAAAA
GAACGCGAGGACGAAcatgagaaaaaatattatcgTGAGACATGGGAGAA
ACAGCAAACTGAGTTAGTACACCGTAGCGCTTTACTGAAACCATCTAGTA
ATAACTTTTCAAGTGAACACATTGCTGCTACTATTTTATCACAAAGTTTA
GGAGCAAACAACCAACACCAACCGGCATTTAACGTACCGCTGATCAATTC
ATCAGTAATCCGAACCAAAGATGAAAACATTCCTGACGGCTATGGTAAAA
AACAACCTTCAGATTTCGATGTTTTGTCGAACATGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000342_pilon | genome | sc0000342_pilon:161594..165277 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 58-969:2773 |
| Aaloc | 1-57:1 |
|
