XLOC_012948 (mRNA) -

Overview
NameXLOC_012948
Unique NameXLOC_012948
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000066_pilon:250387..256103-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012948 ID=XLOC_012948|Name=XLOC_012948|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5717bp|location=Sequence derived from alignment at sc0000066_pilon:250387..256103- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTGCTCAAACTCTCTTGAATTTGAGTGATAAGAAAGATGAAAATAG TGAACCAAGAATGACACCAAAAGTGTTGAAACAAATTTGCAAAACATTGA AATTATATCAAACGCCATATTTGAATGATGTCTTGTATTTACATTACAAA GGATTTTCAAAGATTGAAAGCCTGGATGAATACACTGGTTTGAAATGTTT ATGGTTAGAATGTAATGGTATAACAGCTATCGAGAATATAGCACATTTAA AAGAATTGAGATGTTTATATCTTCAACAAAATCTGATCAGCAAGCTTGGT AATCTTGAAGAGTTGTCTAATCTTGACACTTTGAATGTTAGTAATAATTG TATCAACCTGATCGAAAATATATCTTGTCTTGGAAAATTGAATACGTTAC AGATCAGTCATAATCGTTTGGAGTCGTTTGAAGATGTTGAACATTTATCG GAATGTCAAAGTATTGGTGTGCTTGACTTATCCAATAATCGTTTAAAAGA TCCAAAAATCACAGAGATTTTCTCACTGATGAGTAACCTCCATGTTTTAA ATCTAATGGGAAATCCTGTCGCCAAGGAGATCAAAAATTACCGTAAAAAT GTCATTCTGAGCTGTAAAAATCTAACTTATCTGGATGATCGACCTGTCTT CCCTCAAGAGCGTGCATGTACAGAGGCTTGGGCACGAGGTGGTCGGGAAG CTGAGTTAGCTGAGAAGGAATTTTGGGTAAATAAAGAACGTAGAAAAATT CAAGAGAGTGTTGATTATTTACGTTCAATCCGTGAAAACGCAAGACGAAA CATGCTACACAGTGAAAGTAAAGATGAGGGCATTGAGATTCTGGATATCA GCCAAGAAACGGAGGTTTCTGAGTCAGAGGAAGCTGAGGTATTATTTTAT ACTTTTATTTTTTTTGTGATCTTTTAGTTCCTCAATCGACCAAGTACAAC GCACGGAGCTCTTTAATTTCAGGTAGATTTTCGTCTCAGTAAGGTCCAAT TAGGAGGTATTTCTGTCACAAATTTAACAAAAATTCGATAAAATTTGAAG AATCTTGCCTTATTTGTTGTATAAGTCCATTTCCATCTGAAATAAAAAGT TTTGCTTGATGGACCAATGCGAATAGTACTACCTTTGTTTTGGTGAATTG TAAGGGACTTTTTGAATTAATAAGGGTAATGGGTAATGGCTTTATACAAC CTTTGTTAGATATCTATAAACAATCCCGGGTAGTACCTATTGAAATCGTG TTTTTGAATTTGTAATGTAAAAGTTTTTACTTAACATTTATAATTCCATT CTGCTCTGTATAGTTCTTTTTCATTGTTGTAATTGCTGTCATATGATAAA ATGTGTTCTAACCAGACTACGATGAACGGCTTGAAGCATTTTTTGTTTAC ATAGAAGGGTTTGAAAGTTACGATCAGACTAACAAGAGATATTTTGAAGA AACTTTAAATCTTCTCCTCTATCGTTTAGACGGCCGATTTTCGCCCTGCC TTTTCTAATTGTGGATTAAAGCCAATACGTTCCCCTCTTTTGACGTCAAT GCAATGACTTCTTTCAATAAAGATTTTCCCGACTTTTGCCTACTTTTTAC CTACTCTAACAATTAGAATATGTAGGGTGGAAAGTCGGACGTCTAAACTA GAGCTCAGGTTCCATTTCTGTTGAACCGAGTGCATTTCACTTCGTAAGAC TTTGCATTAGCATGATCGATTGTTGAATATTAATCTGATATTTTGACCAA ATTCTAAACTTTCTCCTCTGTCAGCTGTTCCTCCATTTCTGTTGAAATGG ATGCATTTCACTTCGTACAATTTTGTAATTGTCAACCTTTTTTAAGACAT AGTTAACTATTTTCGATTCCCTACGGGTAGTTTAAGCATGATAAATTATT GAATGTTTATCTGATAATTATATTGTTTTTTGAATAATGTATAGGTTAAT GACGAACCAACATTACCAGACCTTGAGGATCTGTCAGATAGTGATGAAGA TGACAAAGATGACATCATAAGTGCCACAAACAATACAACCTCTGCCAATG CTGGTGAAAATCGAAGTGATATTTTCATCACATCTCCATCAACATTATCC AGTGTTCAACAAAGACCTCTGACAGCTGATCCTATAATGCAAGCATATCC AAAACAAATGAAACAAAATATTACACCTGCGGCTGTTTCCAATGATAATG ATAATACTTTAGGTGAGGTGATTTTCGCGGGAAGAAACTTTTTTCCATGC TTTGAATTTCAAAACCTATTTTCACATTTAGCAAGAAATCTTTCTTTTTA AAATAACTCTACAAGATTTTTAAGATCTAGTTGACCTTTCTGTATGATAC GTAGGCCAATTCCTAGAAATTTCAACCACGATTGGAGACCTATGCTCGAT TGATTGGTCTCTATGGGTGCTATCAAATGCATGGGTCGCGGCGCTTCTAA GTTCTTAACGATTGTATCAAGTTAAAAATGAGCGTGACATAACCTTTCCA CTGGAATGGCCAACAAAGTGATCTCCCTTCTTGTCTATTTTCCCGATTGT CAAGTTTTCCATGATTGATAATAAGCTCTTACTTACTTACCTTTTAGATT CTGTTACCAGCCAACAGAAGTCCATGGATGAAACAACAACCGACTTTTTC ACCAATCTTAACAAACTGGCCACTTTGTCACATCACCAAGTTTCTTCTTC ACATAATGAACCAAAGACCGATTCAAATCAGGAGATTCCGTTCATCACCA GATCTGACACCAAACCAACCAACAATATGTCTTCAAGTGTTTTTTCAAGT AAGTATTGAGTGAAGTTCGGTAAATTCCTCAACATCAAAGAGTTCACAAA GGTTTGTTGAATAAATGAAAAAGAACGTTTTTCTTAAACCTAGTTAACCA AAGTCTTTTATCTGATTTTCTAGAGATTTAGAACTATAAAAGCACTGCTC GGTGTGGCTACTTTTGTGTTACAACGAATATAAATTTATGAATATAAGTT TCAATTTAATAACCCTTATATACACCCCTTTCTCACAGACCCGGTAGGAT TTTTTCAGCCGATGGGGATAAAACTAACGGACTGAAACTCGATGGGGATT GGTATTCCAATATTTTTTATGCCTGGCGATTTAAATTTTTCGTTTTCAAA TCAGAAAATTCGGTGGGGATGGGAAAAATAGCATAATGTTTATTTTCAGT GGGGACAAAAGTTGGAGGATTATTTTCGACAAGGGACGATTTTTGAACAT CTTTTTCAGTGGGTCTGTGGGAAGGGGTGTCATCATCAAGCAGTTACTAC ATTTTTGTGATAAAGATTTCGGATTCGTCTAGATCTTTAGATGTGATCAG TAGGCCGTACCCATTGGGTCATTTCTTTAAATTCACATACGTATGGAGGG TTGACGAACATTTTCAAGCCAAAAACACTTCTTTGAAATGTGTGGATACC CCCAGGAAAATGGTAAAATTTTCAAAAAATCCCTTGGAAAATTTCTTTTC ATACCTTAAAGTGACGTGACCTTAAAGTCTTTTACCCTCTGGAAATTCTA AAATAATTTTTTACCCCTTGGAATTCTGCTTGAATTTCCCTTTGGAAATG TTCGTCCACTCCAATGTATGGATATAAAATGGAATGACCCTTTGATTTTT CTTTTGCCATAGGTGTTGAAAGAACTCTTGAACCAAACATATCATCAGAT TTACTCTTCATTTCAAACGATGAAGGAGATCAAGAAAAGAACACTCCTCT TGATAATGATGAGGATATCGAGACAATCGAATTGACCAATGAAACGAAAC CATCACTAATAATCGAGGTAAGCTTGACTTGTTACTAGTATGTGGACCTT AATTTCGTACCAAATACCATTTGACCATATTTTGATTTTACTGATGGACC TAATGCGGACCTTTTTGGGAGCGCTACCAAAATCATAAAAACGTGAGCTA AAAGACTGGATACGAGTTTCTTTGGTATGTCTATTCTATTATTGAGGTAA AGGTATTCAATAGAGCTCAAAAAACTTTAAGTTTGAGAGAAGAGCAAATA AAAACAGAAAATAAAGCGACTGCCAGTCAGGAATATGTTGTTCAAATTAG CCGATCATCAGTTGTTTACAAAGATGGATTGGTTATTTAGACGATAGCTT ATCGGTTGAATAACTGCTGATTGATTGCTTACATTTAGGTTCCAAATAAA GGGGAAAATCTTTGAGATTTTAATAAACAGGGGGACCTAATTGCCGGGGG GGTTGGAAATTGTACTTCTGAAAGCCCAAAAATAAGGTAAATATAGGCTG AAATCAGGCTATTTAGAGCAAAATAAGGAGCCTTCTGTTTGACAGCTGAA AATATTCTTAAAAATTAACAAGCGGGGGGGGGGTTATTTGAAACCTAAGA GTACATAAAATACGCTGAATTTAAAACTTTGAAAAGGGGGTTTAGATTTT GATAGAGTGTCATCCTATAAAAAAACATGATATAAAACAGGGGGGGGTCA AGCAGTTAGTACAAGACATCATGCCTACTAAGTGATTCTTTGGAGGAAAG AGGCCACACCACCACCCTTTGACAGTTAGTATGAAATATACTAAGTGATT TCAAAGGAAATTCACTAAGGACCACCCCTTAAAACCTATCAAACGAGTGT GATATTTACTTTTTGTCAAACCATGTTCCCAAAATTGTTTTGAAACAGTT ATTGATTTGGTATGATGAATTAAAATGAATCAAAAATTTTATTTTAACAC AACGCTGTACAGCGATATATGTACAAGAGTTTCAAATAACGAAGTACTTC TCAATTGATACAATAATGAAACACCGTAAACCAAAAACATAAACATAATA TGTAGCGTTCAATCAAGGCAGAAAAAAACTTTTCTTAAGTACAGGGAATT ACCCTACGAACATTAGGGGAAAATCAACTGACTTTTTTCTTTTATTTATC AATCTATAGTTAGGGAATTCCCCTGATATAGTGTTTAACTAAAGGGTAAT ACCAAACAAACTCCAAAGGGGAAGACTTAAATGTCTTAGGTTCTTTGATT TCTCTTATGGAGGGGGATTTCCCTGATTGCTTTTAGTATTTATTTTTAAT ATTTTTCTAGAAAAGGTAAAAAAGTAGCACTTAGTATTCATTTGTACTAA CTGTTTTCCTAGATTTTTTACTTGACACCACCCTAGCAGTCACTTAGTAC CATCAAGTACTAACTGATTTTTGAAAATTTTGTAGGTATACCACCACGGT ACTAACCGGCATGATGTCTTGTACTAACTGCTTGACCCCCCCCCCTGTAT AAAATGGATGATTATATAGCTCGAAAAATTGTGCATTTGGAAGTTAAATT GGGGATTTTAGATTTTGGTAAAAGAATAGCCATTCTCGATTTTTTCAATT TTTTTTAATCAGCTCGCAAGACCGTTATTTTAGTATACGATTCAACCTTG GGAGGAACCAAGGTTCCATGGGTTAAAAACAGTCTATTTGAAAAGGTTGA ACATACTTCTTGTATTCCACTTAAGGTTTTATCATTTTCCGTGTTTTAGG AGATCGTTACAAAGAAGAAAGAGGATGGTGGTTTCTTTATCAAAGAAGCG AACGATGCCACTCGAAAGATGAACGAGGAAAGTGAATTGACAGCACCGTC GTCGCAACAAAAGAAGAAATTATTAATCCAAGAAATTGATGGTGTCGATG AAGATGAAGTTGATTGA

Coding sequence (CDS) from alignment at sc0000066_pilon:250387..256103-

>XLOC_012948 ID=XLOC_012948|Name=XLOC_012948|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3360bp|location=Sequence derived from alignment at sc0000066_pilon:250387..256103- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTGCTCAAACTCTCTTGAATTTGAGTGATAAGAAAGATGAAAATAG
TGAACCAAGAATGACACCAAAAGTGTTGAAACAAATTTGCAAAACATTGA
AATTATATCAAACGCCATATTTGAATGATGTCTTGTATTTACATTACAAA
GGATTTTCAAAGATTGAAAGCCTGGATGAATACACTGGTTTGAAATGTTT
ATGGTTAGAATGTAATGGTATAACAGCTATCGAGAATATAGCACATTTAA
AAGAATTGAGATGTTTATATCTTCAACAAAATCTGATCAGCAAGCTTGGT
AATCTTGAAGAGTTGTCTAATCTTGACACTTTGAATGTTAGTAATAATTG
TATCAACCTGATCGAAAATATATCTTGTCTTGGAAAATTGAATACGTTAC
AGATCAGTCATAATCGTTTGGAGTCGTTTGAAGATGTTGAACATTTATCG
GAATGTCAAAGTATTGGTGTGCTTGACTTATCCAATAATCGTTTAAAAGA
TCCAAAAATCACAGAGATTTTCTCACTGATGAGTAACCTCCATGTTTTAA
ATCTAATGGGAAATCCTGTCGCCAAGGAGATCAAAAATTACCGTAAAAAT
GTCATTCTGAGCTGTAAAAATCTAACTTATCTGGATGATCGACCTGTCTT
CCCTCAAGAGCGTGCATGTACAGAGGCTTGGGCACGAGGTGGTCGGGAAG
CTGAGTTAGCTGAGAAGGAATTTTGGGTAAATAAAGAACGTAGAAAAATT
CAAGAGAGTGTTGATTATTTACGTTCAATCCGTGAAAACGCAAGACGAAA
CATGCTACACAGTGAAAGTAAAGATGAGGGCATTGAGATTCTGGATATCA
GCCAAGAAACGGAGGTTTCTGAGTCAGAGGAAGCTGAGATGGTTGCTCAA
ACTCTCTTGAATTTGAGTGATAAGAAAGATGAAAATAGTGAACCAAGAAT
GACACCAAAAGTGTTGAAACAAATTTGCAAAACATTGAAATTATATCAAA
CGCCATATTTGAATGATGTCTTGTATTTACATTACAAAGGATTTTCAAAG
ATTGAAAGCCTGGATGAATACACTGGTTTGAAATGTTTATGGTTAGAATG
TAATGGTATAACAGCTATCGAGAATATAGCACATTTAAAAGAATTGAGAT
GTTTATATCTTCAACAAAATCTGATCAGCAAGCTTGGTAATCTTGAAGAG
TTGTCTAATCTTGACACTTTGAATGTTAGTAATAATTGTATCAACCTGAT
CGAAAATATATCTTGTCTTGGAAAATTGAATACGTTACAGATCAGTCATA
ATCGTTTGGAGTCGTTTGAAGATGTTGAACATTTATCGGAATGTCAAAGT
ATTGGTGTGCTTGACTTATCCAATAATCGTTTAAAAGATCCAAAAATCAC
AGAGATTTTCTCACTGATGAGTAACCTCCATGTTTTAAATCTAATGGGAA
ATCCTGTCGCCAAGGAGATCAAAAATTACCGTAAAAATGTCATTCTGAGC
TGTAAAAATCTAACTTATCTGGATGATCGACCTGTCTTCCCTCAAGAGCG
TGCATGTACAGAGGCTTGGGCACGAGGTGGTCGGGAAGCTGAGTTAGCTG
AGAAGGAATTTTGGGTAAATAAAGAACGTAGAAAAATTCAAGAGAGTGTT
GATTATTTACGTTCAATCCGTGAAAACGCAAGACGAAACATGCTACACAG
TGAAAGTAAAGATGAGGGCATTGAGATTCTGGATATCAGCCAAGAAACGG
AGGTTTCTGAGTCAGAGGAAGCTGAGGTTAATGACGAACCAACATTACCA
GACCTTGAGGATCTGTCAGATAGTGATGAAGATGACAAAGATGACATCAT
AAGTGCCACAAACAATACAACCTCTGCCAATGCTGGTGAAAATCGAAGTG
ATATTTTCATCACATCTCCATCAACATTATCCAGTGTTCAACAAAGACCT
CTGACAGCTGATCCTATAATGCAAGCATATCCAAAACAAATGAAACAAAA
TATTACACCTGCGGCTGTTTCCAATGATAATGATAATACTTTAGGTTAAT
GACGAACCAACATTACCAGACCTTGAGGATCTGTCAGATAGTGATGAAGA
TGACAAAGATGACATCATAAGTGCCACAAACAATACAACCTCTGCCAATG
CTGGTGAAAATCGAAGTGATATTTTCATCACATCTCCATCAACATTATCC
AGTGTTCAACAAAGACCTCTGACAGCTGATCCTATAATGCAAGCATATCC
AAAACAAATGAAACAAAATATTACACCTGCGGCTGTTTCCAATGATAATG
ATAATACTTTAGATTCTGTTACCAGCCAACAGAAGTCCATGGATGAAACA
ACAACCGACTTTTTCACCAATCTTAACAAACTGGCCACTTTGTCACATCA
CCAAGTTTCTTCTTCACATAATGAACCAAAGACCGATTCAAATCAGGAGA
TTCCGTTCATCACCAGATCTGACACCAAACCAACCAACAATATGTCTTCA
AGTGTTTTTTCAAATTCTGTTACCAGCCAACAGAAGTCCATGGATGAAAC
AACAACCGACTTTTTCACCAATCTTAACAAACTGGCCACTTTGTCACATC
ACCAAGTTTCTTCTTCACATAATGAACCAAAGACCGATTCAAATCAGGAG
ATTCCGTTCATCACCAGATCTGACACCAAACCAACCAACAATATGTCTTC
AAGTGTTTTTTCAAGTGTTGAAAGAACTCTTGAACCAAACATATCATCAG
ATTTACTCTTCATTTCAAACGATGAAGGAGATCAAGAAAAGAACACTCCT
CTTGATAATGATGAGGATATCGAGACAATCGAATTGACCAATGAAACGAA
ACCATCACTAATAATCGAGGTGTTGAAAGAACTCTTGAACCAAACATATC
ATCAGATTTACTCTTCATTTCAAACGATGAAGGAGATCAAGAAAAGAACA
CTCCTCTTGATAATGATGAGGATATCGAGACAATCGAATTGACCAATGAA
ACGAAACCATCACTAATAATCGAGGAGATCGTTACAAAGAAGAAAGAGGA
TGGTGGTTTCTTTATCAAAGAAGCGAACGATGCCACTCGAAAGATGAACG
AGGAAAGTGAATTGACAGCACCGTCGTCGCAACAAAAGAAGAAATTATTA
ATCCAAGAAATTGATGGTGTCGATGAAGATGAAGTTGATTGAGAGATCGT
TACAAAGAAGAAAGAGGATGGTGGTTTCTTTATCAAAGAAGCGAACGATG
CCACTCGAAAGATGAACGAGGAAAGTGAATTGACAGCACCGTCGTCGCAA
CAAAAGAAGAAATTATTAATCCAAGAAATTGATGGTGTCGATGAAGATGA
AGTTGATTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_012948XLOC_012948-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066_pilongenomesc0000066_pilon:250387..256103 -
Properties
Property NameValue
Aaloc1513-1680:169
Aaloc1360-1512:2054
Aaloc1159-1356:3119
Aaloc889-1155:3774
Aaloc1-888:5718