XLOC_012433 (mRNA) -

Overview


Name	XLOC_012433
Unique Name	XLOC_012433
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000049_pilon:1091932..1101739+
coding sequence from alignment at sc0000049_pilon:1091932..1101739+

mRNA from alignment at sc0000049_pilon:1091932..1101739+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_012433 ID=XLOC_012433|Name=XLOC_012433|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9808bp|location=Sequence derived from alignment at sc0000049_pilon:1091932..1101739+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCTGCGTGGAAAAGTAGGAAGAAACTTCAAGTCgagaggtgatttttg
gatcaggagagagatggagttttttaagagattttttgagaggaAAGCAA
ATGATATGAATTTGTATGGTGTGACAGGGTTACCACTGTAGGTATTAACT
AAATGCTTTATATTATTTTTCCACTTTTTGTGATGCtggtcagttaggaa
catttggcgagttcctatGCTATACGCGGCCtagcggccgcaatcaaaat
aATCATAACACCACTCAttaactagccgtattgtataagggttccGAAGC
AAttcagactccacctcaattcgcaagttgctagcaaaataagagacact
ctaaaaatccctctaataaagccgttatagagacagggtcgtaagaacct
taatgcccaaacacaccacataaggcgatgggaatttgatgttctgttta
ccgtcgcattccaaaaaatatttgatgcggcaaaatttcattattcatta
ttcattattcctacCTGGTGCTTCCCATCTCCAACGAAGTTGAATTCCAC
CGTGAAATCAAGCTGCTTTCACTTTCGGAATCAAAATGACATGCGCGAAA
ATTCAAACGCGTTCGAGATGCGTCTAAAACGCAAATTTCTAAAATGCCCT
TGTAGCCGCCCACTGCTTaaaaaaaTGCATGTCCCATTCGCGGACGTGAT
TGGAACCATGTCTTTTACTCGAGGCGCACAtttttttAGcgaagatgtta
tttttgattcactttgagtgttttggatagcttggcacaggaaaagaaga
aaataatgagtttttaagaaataatgaacttttttgagcggcgACTCAAG
AGTATGCAGGCGGTCGAtggtaaacagaacatcaaattcccatcgcctaa
tccacggcggcacaacaccccCTGCCGCCCgcgcgcatcgctcttttttt
ccttctagttattctagtgtaaatggtgccttaataaaatcgaacgatat
tcgtcgaacgatcgaacattttatttttattcgaatcacgaatcgtctgt
cgaaatcatcaaaacataaaaataaaacaaaaacaaaaatgtacaaagat
ggcttgttggttcttgggcagttttgatttatttcttgacaaagtaGACA
AATTtcattacctccgtacttctttatcatagaatatccacttggttttg
caaggtataagtttcgttcactataaaagagcactcctcccgcccgcgcg
acttgcaaatactctcattgattgaccttatttgatacttgatacttgct
gctaaaagtcaagggatgatgaagatcctttctgtcaccgttcaaactaa
aGCCACaaattaaagcaaaataaacatttaaaaccgaagaaccactgctt
agattgcttagatagATGCTAGTGCCGCctgcgcggcaatttgatcaact
tcagattctaagtccgtgttccGGCTTCcagtaattttgttgctgttcac
tgctagggtacaccattttaaaacggcaattttcgcagtcctagctacca
aactgagaaagttttcgtggcttcaagccaaaccattcaaggccattttg
ataaaatcatcggtttgaagatgtgatttatatagcaaattttatagcaa
atttttgcttgggatagaagttaaaggtacgtgcacacaaaagcaaaact
gcttcgctcataaattcgcttcgcaaaaagtgGCTTTCGTGTCCTTTCGC
ACTCTTTTTAGCCTAGACTAtttagcaaacatagtaagtataagcacact
gtgcttttaattggctgaatttttttttttgcgtcggaaaaactttttca
aactttcagtcCCTAACTGCTGAGTCCTGATGGTAAACGTTTTTTCATTT
GGCATGGTAACAAACATTTTGCATCAAGTAGGTCGAGAGTTTGACAGGGT
AATTTCTAAGAAAATATGACCAGCAAGACCTTTTGGTATATTTTGTATTG
TAAAATAATACAACTGTTTAAatctatatttttttaaagagatgTTGAGG
AAGATTTGAGAACAGGTTATTTGAAGGAAGACTCTCCGAGAAGGTCTGAG
TTACATTcaaacagacaacaacaacaacaacaacaacaacaacaacaaca
acaacgataTTTAAATGAAGGAGAGATCTCAAAGATGTTTGAAGACTTTA
ATACCATTTTCAGAGGAATATTTGGAGAAATTGAGaagggaaattttcaa
atacctttcaatgatgaaatgaaaaggggTAAACTTATTAAAAAGAGGGC
ATTTCAAAAACcgcaatttttattcatttttagtGCAAtttttttAAGGA
TTTCACATTGCtccaaaatgattcaaaaatgGTTCAATAACAAACAAAAG
CACCAGAATGCTTTCAAAATGTTAAAGGCTGCTTTATCCAGCCTCTTCTG
TTGTGAAAGCTTTTAGAGCATATTGTTTATACTGAGATCCAATTATCCTC
GTTTgtacattttcaaaacaatttttgaacattccaggttataaaatttc
aatttaatctttttaaacaGATGATGGTGGTTGGATGACACTGAAAAAAC
GTctttaataaattttgattttataaaaataaaatgaagtcgcttctgtg
tttacaatttttgttgaagtcattcaggaggatcaaccaatttgattttt
taaagtcttGCTTGATAAGATtaatgtacacgcttttttttttataagaa
tacactttataagaatgtccatgatgaaaatggccaaaaaattaagaata
tggtaagaatatcaccatcatggaatttagcaactgaacctaagaatgcc
atttttaatgcattttaacctgtagattgccagtTTCGaacttaacctaa
gaataccgtaagaatatttttggatgattttctccaaaaagttaagaata
tccatgatgaaatgaaaaaacaccattcttataaaaaaaaaagcgtgtac
attaACATCTGCTTTGCcttcaaactttagaaaaacatgatgctgaaaaa
gatgacacagatctcagaaaagaaatgcttgaaaacaaaagaccagataa
caaaaattgggtaaaaatcCTTTGTTgtttataatgatttttttttatgg
tgaagatcagagatctgacctcaaggagagcaagtgttgaaaatactaaa
taaaataaagatgaaacatgaAAAGGGACtagtatttttataattatacg
tttttttgaattttttttaatatatatatGGATTTTTAAGTGTTGATGAT
accttaaaaagaaaaagtaattgtTATAAAAAGGTAGAAAATTAGTATAT
AATTACGTAAAAGGGGAAAAAATGTGATTGATTAATAGGTTGACTTTTTG
CCTAAATACTTTAAgggaaTttttttgtAaaaattgtgTTTAAATCAAAA
TTATAATTTAGATCCCCATAGTGATTCTAAAGTACATCTTTCCCGGTCTA
TCAAATATAGATACACTTTCCATACATTTCTTCTACATCTTTTATACTTG
GTTTTTAATGTGATTTTAAACTCATTTTGATCGTTATCTTTTGCTTACAG
GAAATTccaaaagataaagaaaatgaacgttccaattttctttttgatat
gaACCAGGTAAATCATGAAATTCAGTTTTCAtgtatattattattattat
tattattattattattattcttattattattattattattggttTATCAT
GTCCGCGCATTTTTTATAAGTTCATAAGAACACAAGACTGAAAACTGGCC
AATACCTTAGAACAAagtaagaacaatctgagcctcatatttcagaaatt
acttagacagtactgattttaacataAATAAAGAGACTAAGTGTATTAAA
GAATATAAGTAAGAACATTTAATcgtgaaaattacaaaaattaagaacag
cccagcctaagCTTGagtcaaaatctttttctaagccttttgttttttaa
agcTTAGACATCGTTTTTCATTATAAGTACTTTTCTGcaagaaaatctgc
aaaatgaTTCATGTTTTGTCACATGAATTGATGGTCTTTTGATCAAGTTA
TGATGTAttagaattgatttttttccagcTCTTTAAGCAACCAAACTTTC
AACCAAAATTCCATGGAAGAAATGAAGGTGAGAGAAAAGATGTGCTTAAA
GTTAAGAAATgattttcgaatgtatttatcAAGGCAATGtactctacacg
tttttttaataagaataaactatacgaacataaggctttgatggccaaaa
tgTtaaGGACAAGTTAAGGACATcctaaggctttatggactctaaaacac
tctaATACACTGAATActcaaaaaatagcgaaaataagaacatgttaaga
acatttttagacaaaaGAACATTCCAagtcttcaaaaatttagatttttt
ttataaaaaaaaggtgtaaTAAAATGTATATCCcaaaaaaagttctgaaa
tcCGAATCTTACCTGAAAGTTTGGAAAATGTTatatagaaaaatatttct
catattgtactcgcaactgttgGTTAGCTATCTATATAGCTTTTAAGTCA
TGTCGTTTCTCTTGgcaatttttatataataactaTATTTACATGCAATA
TCTGATTTATTGcgctttttctttaaaaatgtgaaaaagaaatatttgaa
ttaaATGAATCTGAAACtgagctcttccagaaaagAAGGAATATTTTATC
CAGGGGTATTTTTTCGTGTTAAGGGGGTCGATTTGATGCTTGTAAAACAC
GTGTTTAGAGAGTGAAAAATCGAGAATTCAAGGGGTAGATCATTGGAAAA
ATAACATATACCCTCCACTCCATGAgcagattttttctggaagagcccaa
ttacTGAGAATAATTTTCTGACCAATTTGGCACatagcgttgtttcaacg
tacATCTAGCGTTCACAGCGTCCATCAAacgttactcttaggtgccaaat
aaacggggcggggttcgaataaacagggggggggttcgaaaaacttttca
aatcaaataaacgggggggaacctaattaccggggggttggaaaatggac
ttttaaaaaccctaaaaagggtcaaaatagactaaatttaggctttttag
agtaaaacaagaaactttccttttgggagcTGGGAATGATAACGTccgag
ggggttggaaaaaaatcgaaaaattaacaagcggagggctccgtttattt
ggcacctaagagtagatgattgttgaaacaatgttgtgcaCCAACTGGGA
aacttttctgaaattttagaCGGAGATGAATCAGAAGAAGATGAGCGATT
TGGGATGAGTTTCCACTCCATTTTCCCATGGTCACAAATGTTTGATGACA
AACATTTTCAAGACTCTTCTTCATCACTATATGGAAGTGTCGGAAAAGAA
GGGGATTTTTCGTCAGCCTACAAATTCTCAACAATCACCAAGAAAATAAA
ACCAGACGGTGTATGTAACCAGTAACAGTACTCTCGAACCCCGAATCGAA
GTCCTTAACTTTAATgtgattaattttcgcggagaAATCTGATATAGTCC
TAATTTTATCTGTACAGTATTTTAATCTTTTCGTATCGATTGCCCTGACC
GAAACTCCTGTAATTATAGTTGAATCAAACAAGTTTATCTGGCAAAACAT
TTGGTAATTTTAATCCTGAAGCATGCTATATAGGAATGTTCACTGTTGTT
ATTGGATTTGTTCCTGTtgcattatttttttcctgttgCATTATTTCCTG
TTgcatttattattttttagtcAGTGGAGACGATCACGAAAAGACAAGAT
TCTGATGGAAACGTGGAGGTGGGTGAAACAatcaagcttttttataagaa
tggtgtactGTACTTCAGATTAGAGCTATTCTTGTAAAAGAAGTTTTCCC
TTATTTCGATCGgatcaattcaatttttctcgGTTCGGTACTCAAGCAAT
TTCGCACGAATAGGGTGTCTTGTCCTTACATTTTGTGGACAAGTTTGGAC
TTTGGGGGTTGGAAAGTAGCAAAATGCGGACGCAATGTGCGAACATTCTT
ATAGATGCTCGCTTAAATGCATTCTGTTCATGGATAGACAaagttacata
ttttttttatatcaggctcgcattatgcttagcattctatagtctgaatc
gcagacctctacaaaaccccaggtagtataggtctgcttaatgatctacc
aaccgctttccggttcgcaaaggaaatcttggcgagttaataaTttgatt
gacattgatgtgtAcgcaaaaacgatcgtttcgaacgttttcaatggaat
gtttacattcgaaattcgaatcccagaccagaaaaaacaaaacagagAaa
agataaaaaacaatctgatgcgcgcattatgtacagtctgtagatttatt
tttgacttttgcttttataagatatctggtctgtaaatttatcaaaactt
ttccatcagctctttggtcgaagctcaaaaaaTacAAGTATGAAcacAaa
agtgaaagaaaacaaccagaaacactccaatcttttcAaagaattgaagc
taagtacctgaaaagatacaaaggccacaaaatattaaaaagtgaaatgc
caaagctgaagaaaagttctttgtttgttttgacatttaaaggcccttgt
tgaaggaacaacaacactcccttttgtagaatcataaagaactaatgtca
gaaatattcagtatgacccccaaaatgtactgtatatacataactagaat
accttgaaataatctgcaacatatctgtagaactgacaaaacaattatct
ggagccaaagtgatcaacgaatccagtgtggtaaaaaattatacactcat
acaagtccaaattcaagcatcaaagtgtagttttatgaagcaaaattttg
ttggtgcacacagaagatacatcagggcacttaaattcaataaatctaat
tCTCATCTTTTACAAAATCTCCACATTAAACAAGAAAGGAGGAAGAAaaa
acaagcaaacttccttccgcctacttttatttcgaaatccaaatatattt
tccaatctatgatttggtgcctcacagaaaatttaaacattacgtaatgt
tatatttgtagacactcgccagctaaaaatgtctttagccgtatatcggc
taaaggcggcaaatctatGGACAAAGGaaaaaaagcttattaagcatcct
ctataaggagcacgaacccgttagtggatgccagcagcctaagcattcta
ttgttcttaaacaatagagcaaTTATTCAGGTACCAAAacctgagcctgc
atatgcttataaacgtaatgcttataagaaaaaaaacgtcagaaccaTAT
AATTTGTGTTTCGCATCCaggaaataactcgaaaaacgATTGGCGATCAA
ACGTACACCaggacagaaaaacaaaaagctgGGAAAGAAATCGAAACCAC
AGAAGATTTCATCAACATCGACCAAGGTACTCCAATAAAGatcttttttt
ctgcaaaaatgcACAATCAGTACGTATCTACAGTAAACACTTTCTGATTC
GAACCTCTGTtgttcaatttttctaaaattcaaacTAAAGCAtttttttt
CTTAGCTGGAAAATCAAATGCTCTCTGTAATCtaataattcgaatctttc
tctaatttgttgaaaatcttGAGAGTCAAATCAGAGAGAGTTAAATGTAT
TTCTATCCGTTATTTTCATGATACgtacatatttttttaagcAACCGTGT
TGCTATAAGGGTTCAGCCCTCAGaatgtcaaaaaaattaagcaacTTGGC
CTTAGCCCTGAAAATCAGCATGAATCTGGAAAGCAGTGTGTATTGATGGT
ATTTGAATACCatatttgaggtattttggtcataaaatgagataaaaagc
cAACAAATTTGAAGCTGTTTTTCTGGCTCAAAATCCACGAGTAACTTTTT
AGCTGAAATCCGGAAGATCCTTGGAAACTCCAGCCCTGTGCCAAAAATTG
GGGTTACTTATAAAAAGTGTGTATTCGTGAAGTTGTCTTCACTTCTGCGC
AGAAAACCATCAGGTCTTGATTGAATTTCCACTGTATGATTTCCCACACT
TGGCCAGTGAATGTACCTTCACGTCTGGGATGCCCTGTAAGCATTGGAAA
TATAGCTCTCCCATTATCATATTTACTCAATTTCACCTAAAATTTCAGGC
GATTTGAAACAATTCGAGGAGAAATGGAAAGATAAGAAACAAGGTATAAA
TTTTCACCATCCTTTCAACAAAGTATCCACTATAAAACATAATTTAGCGA
AATGGTAAAATACACTCACAGTACTGCCCCGGTACGAATTCTTGTTTGCC
AAAAGGCATACGATATCGTCgttttagtagggggaaatttgtaaaatcgc
tcgattttttagtcaaagcacttgttatacatttttggaaagctaagggg
taggggaatcaaaataacttgggtgccaattttttttcggacactttggt
gtgattttcggacaaatacgacggtctcaggcaaaaatcatagggttaaa
aattaatgaaaattttagctggagaaaacggagacctgttgtatattttt
ggaaagctctcaaaaaattaagattagtgatatattgcgattataagtga
tttcagtacctaacttgagatattgagcttccgaaagcgcaaaaactgga
caaaacagctgtttctggctgaaaaacactgaaaaacactgtttttaagg
attaatatctcgagttaggtaaagaaatcacctatactcgcaatatatca
ctaatcttgattttttgagagctttccaaaaatatacaacaggtctctgt
tttctccagctaaaattttcattaattttacaCCCTaggatttttgcctg
agaccgtcgtatttgtccgaaaatcacaccaaagtgtccgaaagaaaatt
ggcacccaaattattttgattcccctaccccttagctttccaaaaatgta
taacaagtgctttgactaaaaaagtcgagcgacctcaaaaaaaacgaaca
aatttccccctactatttaGGGTAAGATTCAACTGTCACTTTTCTAGCGA
AAAAAGGCCAGGATTTCGGGTCTTAAAAAGTTAGGTAGTTTTTTAAGACC
CTACCTTtaccgaaaaaaaattccaatctTATACCGGTTATCCAAAATCG
CATTTTCGTctccatttgtggcaaaaaatagctatttttaagctgttttc
aggcttattcaCGAAATTAAATCAACGCaaaatttctcgatttttttcgt
tggcgaaatttaatccgagtATCGGAAATTTTCTGTGGAAGAATCTTTAA
GAAATTTTACCCCATACGACCATAAAGAAACCAGGGGCCCATTATGAAAA
TAATCCTTGCCAACTCCTTAACCACTACAAAAAGGTggcttttcactttc
tttcacaATCAATACACGgcttgcaaaattatatcaatgcagtcaaaact
tgcttcacaacttacagctgataaatttattagtgtcaatatattcgaac
caatcagaaataaatgtcttGTAAGGAGCACATAAAACTTCGAGTAAAAG
cgttatttgtcttcagactttaatttaaATTTGCGTCATGGGACCTTACT
TTTACGTACGATTTACGAGATCTTTTTACGGCGCTATTCGATTTATTCTT
TTCAGGGAATCTTCGAAAGGATCTCATTCTCGATTCACCTGACCAAGAAA
ATGTATGA

Coding sequence (CDS) from alignment at sc0000049_pilon:1091932..1101739+

>XLOC_012433 ID=XLOC_012433|Name=XLOC_012433|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2010bp|location=Sequence derived from alignment at sc0000049_pilon:1091932..1101739+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCTGCGTGGAAAAGTAGGAAGAAACTTCAAGTCgagaggtgatttttg
gatcaggagagagatggagttttttaagagattttttgagaggaAAGCAA
ATGATATGAATTTGTATGGTGTGACAGGGTTACCACTATGCTGCGTGGAA
AAGTAGGAAGAAACTTCAAGTCgagaggtgatttttggatcaggagagag
atggagttttttaagagattttttgagaggaAAGCAAATGATATGAATTT
GTATGGTGTGACAGGGTTACCACTagatgTTGAGGAAGATTTGAGAACAG
GTTATTTGAAGGAAGACTCTCCGAGAAGGTCTGAGTTACATTcaaacaga
caacaacaacaacaacaacaacaacaacaacaacaacaacgataTTTAAA
TGAAGGAGAGATCTCAAAGATGTTTGAAGACTTTAATACCATTTTCAGAG
GAATATTTGGAGAAATTGAGaagggaaattttcaaatacctttcaatgat
gaaatgaaaagggagatgTTGAGGAAGATTTGAGAACAGGTTATTTGAAG
GAAGACTCTCCGAGAAGGTCTGAGTTACATTcaaacagacaacaacaaca
acaacaacaacaacaacaacaacaacaacgataTTTAAATGAAGGAGAGA
TCTCAAAGATGTTTGAAGACTTTAATACCATTTTCAGAGGAATATTTGGA
GAAATTGAGaagggaaattttcaaatacctttcaatgatgaaatgaaaag
ggaaaaacatgatgctgaaaaagatgacacagatctcagaaaagaaatgc
ttgaaaacaaaagaccagataacaaaaattggaaaaacatgatgctgaaa
aagatgacacagatctcagaaaagaaatgcttgaaaacaaaagaccagat
aacaaaaattggGAAATTccaaaagataaagaaaatgaacgttccaattt
tctttttgatatgaACCAGGAAATTccaaaagataaagaaaatgaacgtt
ccaattttctttttgatatgaACCAGcTCTTTAAGCAACCAAACTTTCAA
CCAAAATTCCATGGAAGAAATGAAGcTCTTTAAGCAACCAAACTTTCAAC
CAAAATTCCATGGAAGAAATGAAGaCGGAGATGAATCAGAAGAAGATGAG
CGATTTGGGATGAGTTTCCACTCCATTTTCCCATGGTCACAAATGTTTGA
TGACAAACATTTTCAAGACTCTTCTTCATCACTATATGGAAGTGTCGGAA
AAGAAGGGGATTTTTCGTCAGCCTACAAATTCTCAACAATCACCAAGAAA
ATAAAACCAGACGGTaCGGAGATGAATCAGAAGAAGATGAGCGATTTGGG
ATGAGTTTCCACTCCATTTTCCCATGGTCACAAATGTTTGATGACAAACA
TTTTCAAGACTCTTCTTCATCACTATATGGAAGTGTCGGAAAAGAAGGGG
ATTTTTCGTCAGCCTACAAATTCTCAACAATCACCAAGAAAATAAAACCA
GACGGTtcAGTGGAGACGATCACGAAAAGACAAGATTCTGATGGAAACGT
GGAGtcAGTGGAGACGATCACGAAAAGACAAGATTCTGATGGAAACGTGG
AGgaaataactcgaaaaacgATTGGCGATCAAACGTACACCaggacagaa
aaacaaaaagctgGGAAAGAAATCGAAACCACAGAAGATTTCATCAACAT
CGACCAAGgaaataactcgaaaaacgATTGGCGATCAAACGTACACCagg
acagaaaaacaaaaagctgGGAAAGAAATCGAAACCACAGAAGATTTCAT
CAACATCGACCAAGGCGATTTGAAACAATTCGAGGAGAAATGGAAAGATA
AGAAACAAGGCGATTTGAAACAATTCGAGGAGAAATGGAAAGATAAGAAA
CAAGGGAATCTTCGAAAGGATCTCATTCTCGATTCACCTGACCAAGAAAA
TGTATGAGGAATCTTCGAAAGGATCTCATTCTCGATTCACCTGACCAAGA
AAATGTATGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_012433	XLOC_012433-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000049_pilon	genome	sc0000049_pilon:1091932..1101739 +

Properties


Property Name	Value
Aaloc	943-993:9758
Aaloc	898-939:8251
Aaloc	790-894:7421
Aaloc	742-789:5821
Aaloc	553-741:5322
Aaloc	502-549:4129
Aaloc	445-501:3601
Aaloc	367-444:3033
Aaloc	244-363:2158
Aaloc	139-243:2041
Aaloc	1-135:1

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XLOC_012433 (mRNA) -