XLOC_011867 (mRNA) -

Overview
NameXLOC_011867
Unique NameXLOC_011867
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000353_pilon:244695..247824+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_011867 ID=XLOC_011867|Name=XLOC_011867|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3130bp|location=Sequence derived from alignment at sc0000353_pilon:244695..247824+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGCCTCCGACAGCATTGGAGAAGCTTCCTTTACCACCTCTGGTGTC
AATTGGTCTCATCCTGATTATTTTATCCTTTGCAATCATCGTCCCattgt
atttcatcatcaagTATAAACAAGAATGCTTCAAGTTTtggaaaaagctt
tttaaaccTTTCATTAAGTATTGCTTAGCTGGTGATGCAGGTATTTTGGA
TAAATAATGGCTCTAGTTtagaccactgacctttatataaccctggacaa
agcttctcaatcccagccaagcaaaatctttgatcggagttttttgaaaa
ttggtaccctaatgtcggcactactcgatagcggtgtaaatgcatcgaga
gagctaggtctactttccctcaaattcttttgatgatgtagcggcgttaa
acgttaatttttagcattgcaatggcttctccttgggtaccaattctaaa
aaaactccaatcaaagatggcaaatattgcttggtccagggttatataaa
ggtcagtggtttaGACGGACGATTTTCTTCCCTGTCTAGAGGGgatttat
ctaaagaatcctgcattactaaaaatagacaaaaagaacgacaaatttca
taaaaaacgacatatttcgccgttcacaaccccgaccgaaagtgactgta
ccacccctagcgattcattCCCTTTCGTTTATCACGGGAAATAACTACGT
GTGGTtcaaaagaacgacaaattacgcatgcgtgttacaatgcaggattc
tttagaggaacagactgctattctaattgttaggcagaaagtgggcacaa
agtCGGCAAGTTAAActttaaagattgaaagaagacattgcattgacgtt
tAAAGAAGGCAATGCATCGACCttaaggctggtctccactttcgcgcgac
atgagcgaaaacttttttatgacgtaatcttttcttcaggcaaaaaaggt
tacgaaaaaaactgtcgcccatttcgcgtgaaagtggagaccggccttta
gacagcccactttctGCAAactttaattcaaaattaagataggcagggcg
aaaagtgggccgtctaaactagaactTGGTATCATTTTTCCTCAGTGCTA
ACATGTGTGTGATATTATTTTCTGAAGTCGATTTTAAAGTGCTAGAAAAC
TCGAGCTTTCATTATTAGACCAATACCTAAACTTCTGTCATGCGTAACTT
TAgccaaaaattcaaactttattAATGTGTCTTTTCTAATTTGCccctat
tttatcaaaattatttaaaatacATATCTTAACAGTATACCACTACCCTT
TAAAATCTGTACACTTTAAAATTACCAAATTACGGACCTAAACAAATGCC
AACTCCCCTGAAAATTCTGATGCTCTGATCTTTATCAAAGTGATTCATTT
TTCCAGCTGATGGTATCGATTTATGTAAAGTTCAGCTGACAAAACGTACA
TTTTACGAGCGCGTCCACCCGTCAGTCAACGAGCTAGAATTCAGTCGTCT
TGATGAAAATGACACAAAATTTGGCATTACTTTGggtcaagttcattttg
gattAAATTATGACAgcgtcaaaaatattttgaaaatcaaaatttatgaa
gCAAAAGATTTACCGGCAGCCGATGAAGGTAAAGAATAATGGAACTCctc
actttttcttttaaattaaaaacgAAAGGATTTTTTCTAATTCGACTCTC
TATTATTCGAAAACAATGTTGGTCCCTTCAGCTCGAGATTGTTATTTTAc
tttgaatctttctctaattcgaaaaattTGAGGGATTGGGTAGTGTATGG
ACAACAATAAGTCTCTCACtttttttGTAATGATTTGTTATAAGAAACAG
GAacttttatgttgttttttaaatatcacGATTCATTCATTTAAAAGCCT
CAATTCTGGCCAAAATAAGTCTAAATAAAGCATTTCTAAGGCATATTAGG
GTGTTAAAATTGAGATTTTCTCTCGACAGCGTGAACCTTTGTTGCGCCTT
AATACTCACTACATTTTTTGCCACCCACTTCCCAGACCATGTACATGATT
TACATTAGAGatatccactgacctttatatatccctggaccaagttactc
aatgccggctaagcaaaatattatgatcggagtttttttgaaattggtac
cggCGGATAGAGCGCTAGATCTTCTATCGCTTGTACACTAGTGATATAGC
ACCGTTTGTCggtaggcaaagtttcaaacactacaatggtttctttgcgg
gtaccaactttcaaaaaacttcgatcaaagatggcggatatagcttggtc
cagggatatataaaggtcagtggatgtATCCCTGTTTCTTTCATCTCACA
GGTGGAGCGTCCGATCCATACATTCGTATTATGTTATTACCGGACACTAA
AAAACGGTTCGAAACTATTGTTCTTGATGATACACTCGATCCAGTCTACA
ATCAAGAATTTGTCTTCAAAAATATGCCACTGTCTGAACTCCAAAAACGT
AAACTTTGCATCCAAGCTTTAGATTTTGATACACAACCTATACATGATAT
TTTAGGAGAAACTTTAATCCCACTCATCGATTTAAACATTGTTACAAAAC
ATAATAGTAAAGATCTTATAGATTTTTGGCGGATTTTAGTTCCCGGTTAT
GATCCCGATAATCCGGGTGAATTCAAACAATCACAATCGGATTACGGTGA
TATATGTGTATCGCTACATTACATGCCTGCCGTGGCGACATTGAAAGTGT
ATATTATAGAATGTAAGAACTTGAAAAGTGTTGATGAGGGTGGAGTGTCG
GATCCTTTCGTTAAAGTCAccataatgaaaaataaagtaaaactaaaatc
gcaaaaaactgaaGTTATCAAACAGACGTTAGATCCATATTACAATAAAG
AGATGAAATTTAAGTTGGACCCGGCTGACGCACCTGTTACTGATCTACGA
TTTTTGGTTATGGATTATGATTTCCCTATCGGCGCTGACGTCATCGGCGA
GGTCGTCATTGGAGCCAATTCGTACGGACCGCAGAAGAGACAATGGAGAG
ATATGTTAAGGTCTCAGAAAAGACCAATCGCGTGTTGGCATATGTTGAGA
CCAAAAACGAAGAAAGGCGAGGAGGATTAA

Coding sequence (CDS) from alignment at sc0000353_pilon:244695..247824+

>XLOC_011867 ID=XLOC_011867|Name=XLOC_011867|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2382bp|location=Sequence derived from alignment at sc0000353_pilon:244695..247824+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGCCTCCGACAGCATTGGAGAAGCTTCCTTTACCACCTCTGGTGTC
AATTGGTCTCATCCTGATTATTTTATCCTTTGCAATCATCGTCCCattgt
atttcatcatcaagTATAAACAAGAATGCTTCAAGTTTtggaaaaagctt
tttaaaccTTTCATTAAGTATTGCTTAGCTGGTGATGCAGATGAAGCCTC
CGACAGCATTGGAGAAGCTTCCTTTACCACCTCTGGTGTCAATTGGTCTC
ATCCTGATTATTTTATCCTTTGCAATCATCGTCCCattgtatttcatcat
caagTATAAACAAGAATGCTTCAAGTTTtggaaaaagctttttaaaccTT
TCATTAAGTATTGCTTAGCTGGTGATGCAGCTGATGGTATCGATTTATGT
AAAGTTCAGCTGACAAAACGTACATTTTACGAGCGCGTCCACCCGTCAGT
CAACGAGCTAGAATTCAGTCGTCTTGATGAAAATGACACAAAATTTGGCA
TTACTTTGggtcaagttcattttggattAAATTATGACAgcgtcaaaaat
attttgaaaatcaaaatttatgaagCAAAAGATTTACCGGCAGCCGATGA
AGCTGATGGTATCGATTTATGTAAAGTTCAGCTGACAAAACGTACATTTT
ACGAGCGCGTCCACCCGTCAGTCAACGAGCTAGAATTCAGTCGTCTTGAT
GAAAATGACACAAAATTTGGCATTACTTTGggtcaagttcattttggatt
AAATTATGACAgcgtcaaaaatattttgaaaatcaaaatttatgaagCAA
AAGATTTACCGGCAGCCGATGAAGGTGGAGCGTCCGATCCATACATTCGT
ATTATGTTATTACCGGACACTAAAAAACGGTTCGAAACTATTGTTCTTGA
TGATACACTCGATCCAGTCTACAATCAAGAATTTGTCTTCAAAAATATGC
CACTGTCTGAACTCCAAAAACGTAAACTTTGCATCCAAGCTTTAGATTTT
GATACACAACCTATACATGATATTTTAGGAGAAACTTTAATCCCACTCAT
CGATTTAAACATTGTTACAAAACATAATAGTAAAGATCTTATAGATTTTT
GGCGGATTTTAGTTCCCGGTTATGATCCCGATAATCCGGGTGAATTCAAA
CAATCACAATCGGATTACGGTGATATATGTGTATCGCTACATTACATGCC
TGCCGTGGCGACATTGAAAGTGTATATTATAGAATGTAAGAACTTGAAAA
GTGTTGATGAGGGTGGAGTGTCGGATCCTTTCGTTAAAGTCAccataatg
aaaaataaagtaaaactaaaatcgcaaaaaactgaaGTTATCAAACAGAC
GTTAGATCCATATTACAATAAAGAGATGAAATTTAAGTTGGACCCGGCTG
ACGCACCTGTTACTGATCTACGATTTTTGGTTATGGATTATGATTTCCCT
ATCGGCGCTGACGTCATCGGCGAGGTCGTCATTGGAGCCAATTCGTACGG
ACCGCAGAAGAGACAATGGAGAGATATGTTAAGGTCTCAGAAAAGACCAA
TCGCGTGTTGGCATATGTTGAGACCAAAAACGAAGAAAGGCGAGGAGGAT
TAAGTGGAGCGTCCGATCCATACATTCGTATTATGTTATTACCGGACACT
AAAAAACGGTTCGAAACTATTGTTCTTGATGATACACTCGATCCAGTCTA
CAATCAAGAATTTGTCTTCAAAAATATGCCACTGTCTGAACTCCAAAAAC
GTAAACTTTGCATCCAAGCTTTAGATTTTGATACACAACCTATACATGAT
ATTTTAGGAGAAACTTTAATCCCACTCATCGATTTAAACATTGTTACAAA
ACATAATAGTAAAGATCTTATAGATTTTTGGCGGATTTTAGTTCCCGGTT
ATGATCCCGATAATCCGGGTGAATTCAAACAATCACAATCGGATTACGGT
GATATATGTGTATCGCTACATTACATGCCTGCCGTGGCGACATTGAAAGT
GTATATTATAGAATGTAAGAACTTGAAAAGTGTTGATGAGGGTGGAGTGT
CGGATCCTTTCGTTAAAGTCAccataatgaaaaataaagtaaaactaaaa
tcgcaaaaaactgaaGTTATCAAACAGACGTTAGATCCATATTACAATAA
AGAGATGAAATTTAAGTTGGACCCGGCTGACGCACCTGTTACTGATCTAC
GATTTTTGGTTATGGATTATGATTTCCCTATCGGCGCTGACGTCATCGGC
GAGGTCGTCATTGGAGCCAATTCGTACGGACCGCAGAAGAGACAATGGAG
AGATATGTTAAGGTCTCAGAAAAGACCAATCGCGTGTTGGCATATGTTGA
GACCAAAAACGAAGAAAGGCGAGGAGGATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_011867XLOC_011867-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000353_pilongenomesc0000353_pilon:244695..247824 +
Properties
Property NameValue
Aaloc415-1191:2354
Aaloc193-411:1409
Aaloc1-189:1