XLOC_009323 (mRNA) -

Overview


Name	XLOC_009323
Unique Name	XLOC_009323
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000098_pilon:777580..784932+
coding sequence from alignment at sc0000098_pilon:777580..784932+

mRNA from alignment at sc0000098_pilon:777580..784932+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_009323 ID=XLOC_009323|Name=XLOC_009323|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7353bp|location=Sequence derived from alignment at sc0000098_pilon:777580..784932+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCCAAAGCGTCAGGCGTTGGAAGCTCACGAGAGAAATGGCCACGTCG
ATCAGAGTTTCTCTTGATGTTGTTTGGTTATACCGTGGgtcttggaaatg
tgtggagATTTCCTtacctgtgtcataagaatggTGGAGGTATGctggtt
tttattttaatcctgggtgttcgggcgtttttgggtcgggcgtttttggg
ttgggcttttttgCTCAAGGGTCCGAAAAACGTCCGGTCCAGtccaaagc
ttttttcacatgcacgtaaaattttaatttagaccttacggaaaatcgtt
cgtaaggctgtcttttggaaatttccccgacattgtgtagagtttttgtt
gattaagagggtcttacgtgacttttccttccgttcaaaactttttgaac
gtaagcaaactgtagataaggccttaaaacactacaTAAGCTTTACACTA
GTGCAATAATCGCTATATCCATCTCTGGTAGACATGAGGGGACACAGTGG
ATCAAgatgtaaaaaagtgaaacagcGGGGCCAGCAAAATACTAATCTGc
agaatgaagaaaaataactattcattAACAAAACCATTACCTGTGcaaga
aaaattacaagaaataAATTGAGCTTTCTCGGTACTTCTTTCAAGATACA
GTAACTCttttttttCAGCTTCCTTTCTCATCCCCTACTTTATCATCCTG
GCTGTAGAAGGGATGCCGCTCTATTACATGGAGCTATGTCTCGGTCAACG
GCTAAGGAACGGATCCGTTGGTGTCTGGCATCTAGTATCTCCTTACTTGG
ATGGTTTAGGATTTGCATCTGTTGTGATTTGTATCATGGTCTGTTTATAT
TATAATGTGATTTTATCATGGTGTTTGATTTATTTCGTCAACTCTTTCAA
GAATCCTTTACCATGGTCAGAATGCCCGAAAGTCACCATCACTAAAGGTA
AAACGATTTATTTTGGAAATCACGTGTTCTCTCTTATATTGATAGTATCA
TACTCTTATTCATTGAAATCAGCTccttagaccatgttcgcacgtgacgg
ttccgtttcgctccgaaacgaaatgaagccattctattgattacattcaa
gtgttacgtcacttctaaccaatagaatggcttcatttcgtttcggagca
aaACAGAACAGTCACGTGCGAAATTGGTCTCAAAGCCATTCTATGCAAAT
AATTTTTAAGGACAATCAGAACCTCCCCCGACTTGAAGACTATCTTTTGA
GTTAAGGAGAAATTACAATTTATTTCGTTTTAAATAGAAGTTTAAGTTTG
AGAACAGTACATTTACTACGTAGCAGACTTGTACAAATGCGTATTGATTA
AGAGTGTTCTCGATTCAAAAGTTTTAAGAAACCAATTCAGTGCTTACAAC
TTTGCCTGACATCTAACGGCACTTCATTACAAATATGTAAGGAAAGTAAA
TACGGCGCTTTCGTTGCGATTTCCTCTTTTTCTTTGAGCTCCGAtcagat
agatagatatgagtcctccgaatgcattcgggatgggtcctacaCAAGAA
GGAGTAGGAATtacggcgctgacagacactgcggcttgacagacgcgagc
tgccaagccaCGGTGTATACCATGATATgcgaggccgaaccttatgagtg
ttacggcacgtcacaatgtcaGTCTAATccacccacactcttgtatcaga
gtaatgttacccaattcccctcacatgacatgggttgacccgggcgaagg
tatattcacttgccaatTGAATCGTAGAGAAACCGTGAGTATCGAATTCG
GGCTtcccaggcgggagtcaaggatgataaccactataccactacgcctc
CGATCCAGAAATAGTGGATAATATAAACTTAGTTCAGAGTTTTGAGTATA
ATTCATTTCATGGTATTATCCTCGATTTTTGTAGGAAATCAGACCTTCCA
ACAGCCCAATGCTGAATGTGAGAAGGCAGGGCCGACCAGTTATTTCTGGT
ATCGCACGACACTTGATATATCCGAAGATATCGAATCTGGTAATGAAATC
AATTGGACAATCGCGTTCAGTTTGTTGTTCGCTTGGTTGGTCGTTTGGCT
TTGTATGGTGAAACGAATCAAATCGGAGGGCAAGGTATGAAAACAAGTTc
acctttttataagaaacatcttttttttccttttttataagaaccgtCTT
CATATATCCTTACTGAAGTTTGCTGTTCTCATGTTTTAGATCTGAAATTG
CTCTTATCATGTTCTTACTAATAAACTGATTACTAATTTGACATTTCATg
ctcaggattgttcttaaaatgttcttatgttttggcacttttcagcctta
aaaaattataaaatttcctTATAAAAATGAGTGTAgcaaaagatatcaaa
ctaaCGCCAATCTAAGTCCTTTTGAAGAACGATAAACGTAATATGATGGA
TTTCAGCTTTGGAAGatttaaaatttacgtttttctGTCTGAAAATTCAA
TGTTGGTTTTGGTCACACAGTAGATtgtctttaactcgaatgtctcctta
gcTCGAACCGGTTTTATGGTTCCTTCAGttaaatgccttataaaccttac
tccataattcgaaaaatgttccccatgcgtgtttgagttatggaggcTCA
ACTGTAAAATATTTCTGTCACTAGAGTAGAGTATGTCTTAGAAAGTTCTG
TCATCAAGCCATACATTCTATTAAGTTATTTTGATATTCTCTATTAACCA
tccatttgtttttcttttaggtAGTGTACGTGACTGCAACATTACCCTTG
ATCTTGCTTGGTGCAATGTTCTTCCGTGGTGTCAATTTGGACGGCTTTCA
GCAAGGACTTGCCCTTCTCTTTGTTCCCGAAGTATGTTTGCCaattgatt
taagattttaagtttttcatttttcactcgcacactttccacactttttt
gtaaagtaaaaatttttggttgcgcctccttagactcATTGCCACCcacc
cactttcgatttcatggcgtgggccctgttTCAGCGTTTTACTTTATATA
ATTGACGTAATTGACATGATAGATAAATTCTGTTCCCTTGCAATTCATTA
CTCCCTTCATATTTCAGTTCTCAAGATTGAAGGATCCTTTGGTCTGGTTA
GACGCTGCCACACAAACATTCTACTCTCTCGGTATCGCATACGGATCTCT
GATCGCATTTGCAAGCTACAACCCGCTAAAGAACGACACAACCAGAGATG
CTATCACCATCTGCCTCATAGATGCTGGAGTCAGTGTCTATGCCAGCGTT
GTTATATTTTGTTTCATTGGGTATCGTGCTGAGTTGAAAATGCACGATTG
TCTCGCCATGTTGGGGCTGAACCATACAGAGTCGGAATCGTACGAAATCT
TCGTAGGGAATGCTACTGTGAACGGAAATATAACTGAAATCGTGTGTAGT
AAAAAGGAATTCCTTGCAGAGGTATTTTAagatctttaaaaatattttat
tcttattGTACAAATTCTTCCAATACAATTCAAAGTGTTTTACTTGCTTT
ATTTCATGAACAATTGCCAATTTTCAGACAGTTTTTTGCCTAATGTATGA
GCTCAGTCTTTTTACTTTTAGGAATAGAAATCCAGACATTTTCATCCAAA
CAAAgtccaatcttttttttaaatcgaaaaCTCAAAATCAATCCTCAAAG
TCTTTTGCCTAATGTAGAAATTTTTATATCGCTAGCTCATCACATTACTC
GAATGTGAATTCTTCACTTTACTAGCTTTCACAATCGACTGGTCTTGCCT
TCATCACCTTCACCGATGCCATCAACACGTTGCCACAAGCTCAAATGTGG
TCCATACTGTTCTTCCTGATGCTTCTGATGCTAGGTGTAGACACACAGTT
TGGAATGTTGGAAGGACTATTCACGCCGCTCTTTGATGCGAACCCGTTTC
CAAAACTGAGGAAAGAAATTGTGACAGGTTCGGAAAggttttttattact
ttttgaagcacaacctttgtgagataacctttattagttttactttttCC
CATGTttaacttttgaattaaggttTGAAACTTAGGTTACGTGTCTGTAT
AAGTTTATCTATATattcgaaagcagccggcgaggcgacgttttttttcg
atgtgttctgagagcctatttcagctagaaaatttgatctgttctgatca
gatcctcgaaattaatcagctagaaatgtctagaaatgatgatgtgttct
gacgagacaggggtataatcaaggtcatctaacgtgttcttgttgtctag
ataaccctagaaagcttcagaacacattttttaaggagacaggggtataa
tcaagcaAAAATTGATGTTATCTTGTTGCCTAGcaaccctagaaattttc
agaacacatctatCGTGGAggaaaacaaatatcttacaagtttgtCTTGG
CAAACTgcttttcctagattttagaacacatcaaaccataaaatAGTGac
aagtttagggagacaaatagtgcgataaaggtttcctagaaatcagaaca
catcatttgtatagaaaattgaaaagtcataacagttggtctcctagaag
ataagaacacatatttctaaaaaatctcttcgccggctgcttctgtatAT
TATATGTAGAGTTTATCTTTATATGTAGAGTCTTAATACAACTATATATT
TCCCTTCTGTCCGCACTAGTTCTCTCAGtttgaaccacaagtgattttgt
ggtttagagatgctggctaaatcgatctagccagccagggtgcagtatgc
agtgcagacgagtcctaataaggacgaaatgcatgctgctctgccaccca
aatctcctgagtgaatatagttggacagaaattcttatttcttcgcATAT
ATATTATATAACTATTCTTGTTCAGCAAGGGAACAAATACGACCGACGGT
TTGTGATCCTATCAGATCTTCTTTATTTGAGTGATTTATCTCGAGGtttt
tttAGatacctccttctcacagagcCGGTAGCAtttttttCAGCTattgg
gggtaaaaataacagactgaaactcgatggggatagATATTCCCTTCTCA
TGACTGGGggtttcaattattttgaaacacccagtcaaacaaaaacaaca
gtGAGGATTCGTTTATgtgattattttcagtagggacagaattgaagtat
gattttccactggggacaatattttggccaatcttcCAGTGGTAGAGGTT
TCCactgggtttgtgagaagggtgtGTATTTAGCCTCAATCAGGATTTAA
CTTAATGTTTCATTTCAGGAATCGTCTGTCTTGCTATTTACTTACCAAGT
TTAATCATGACACAGCATTCTGGTAACTATTGGTTACAAATCATTGAGAA
TTATTCGGTTGGAATTCCGTTGCTGGTGGTGGCGCTATGTGAAGTCATCT
CTATATCATATCTGTATGGCATTGAAAGGTATGTTAGACTATGTTCGCAC
GTAACGTTtctgtttcgctccgaaactAAATGAAGTCCttttattggtta
gaagtgacgtaaaacttaaatataaccaatagaatggcttcatttcattt
cggagcgaaacgaaaCCGTTGTGGTCTTAGAGGTGCATTGCATATGAGAT
CGCTCCATTTCTTTGCTCCTGTACCAGTAGGTCTGGGTCTAATAGCGCTG
CGACATCTCGCGCTGATTTTTACCTTGCCCAAATaaaaaaaCGAGATTGG
CATTTTCTTTCCTTGTTGGGACGTGTACACGCATTGGAAATCAGAAATAT
TTGCATTGATTGCATTAAGTTTCCTTTTGCGAATTACataatgaatatgg
acggcatCAGTCTGGTGTCtagttttagaaaaacatttacTGTAATATCA
CTTTGTATGAACGTTTTGGCttaatgaaagtgaaaaatatatttactGTA
TCGGGATACTGCATAATTAACTCATTTGCAAATCATAAATGAGCAGTTAT
GAGCGGTTCAATGATTAAAACACTAGTTGGAGAAAGAAATGCCTAGAGGA
TCCTTTTTAACAGTCATCTGAAATGTACACGCTTTTAAGagcatccaaat
tttttgaaaccttaaaatgtttttaacatgttctttatcattttcaccat
atttttgtctatttatctaagaaatcaggtgttttaatTCTAATAGTTTT
TTCTCATGTACTTCATCATAAGTGGAAGAAAGAAATGCGTAGCAGTGGAT
TCTTTTCAAAATGcatctaaaaaatatttcttgatcATCATCATTTCAAG
CTTCCTCCATTTTTGTCTTTCGTAATTCGTAATGTTTTTGGGCGTTACAA
CACCAGTACTCGATTTCCTTATTGGGGTAAAGAGACAGGAACACTGGATT
TTATTCTGATTATATCCTTGAAATCTATATTTCTTTCAAGTTTGCAAATG
TTTCAATAGTGCTCAATAATTCTAAGGAACTTTACATAACCACCAAGAAA
ATGATTTTGCAGTACGCCAAGTATATCATCATTTCTTTCTAATTCATTCG
ACAGGTTTTGTAATGACATTGAGTATATGACAAACAAACGACCGAACAAA
ATTTGGGTGATATGTTGGAAGATCATTTCACCAGCCCTCATTGTTTTTGT
GCTCATCTTCAGCATAAAAGACCTCTGCACCAAATCACCAACCTATCAAG
TGTGGGTAGCACGTATGGTAAGTTAGACTGCTATCTActttacacgtttc
ttttttccTGATCACGTCATCATAAATTGGCCCAAAATTGCGTAAAAAGG
GCAAATTTGAGTGGGCCCCGGGCTAAAATCGTTTAGTAAGGTCTAAACTC
GGTccgtgcaaaatttcatgcttttagcCAAATTCCATCAAAATTATGCA
CCAATTTTGCCGTTTCgtatgtattttttgtttgttttctgcAATGTATA
GCCACTATTTGAATGCCCAATACTCACTCAGCCCGATATCTATACACCAA
ACAAGTGCTTAGTATTAGCGGTAACAAAATTATGTTAATCGTTCGTCCTT
TCTTTCTTTATACAGGCAGAAGGGAAATACGTTGAGCTTCCACCGTGGGC
GATCGTTTTTGCTGTTCTTCTCATGTTTTCTTCGCTCATCATGATCCCTG
TAGTCgctcttttgaaatatttcaaaatcatcaAGAAGGGAAGCAGCCCT
GGGAGACTGGGACTTAGTTTAAGTAAAAAGACACGTGGTAGGAAACAGAG
GAATGGTAACGATATAGCTTCTGTTCATCGGCCCCTTCAAGCCATGGAAA
GTAATACGTTTTCAATGGCCACTGAGTTCTCTGACAACATGTTCAAGTTG
TGA

Coding sequence (CDS) from alignment at sc0000098_pilon:777580..784932+

>XLOC_009323 ID=XLOC_009323|Name=XLOC_009323|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3792bp|location=Sequence derived from alignment at sc0000098_pilon:777580..784932+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCCAAAGCGTCAGGCGTTGGAAGCTCACGAGAGAAATGGCCACGTCG
ATCAGAGTTTCTCTTGATGTTGTTTGGTTATACCGTGGgtcttggaaatg
tgtggagATTTCCTtacctgtgtcataagaatggTGGAGATGTCCAAAGC
GTCAGGCGTTGGAAGCTCACGAGAGAAATGGCCACGTCGATCAGAGTTTC
TCTTGATGTTGTTTGGTTATACCGTGGgtcttggaaatgtgtggagATTT
CCTtacctgtgtcataagaatggTGGAGCTTCCTTTCTCATCCCCTACTT
TATCATCCTGGCTGTAGAAGGGATGCCGCTCTATTACATGGAGCTATGTC
TCGGTCAACGGCTAAGGAACGGATCCGTTGGTGTCTGGCATCTAGTATCT
CCTTACTTGGATGGTTTAGGATTTGCATCTGTTGTGATTTGTATCATGGT
CTGTTTATATTATAATGTGATTTTATCATGGTGTTTGATTTATTTCGTCA
ACTCTTTCAAGAATCCTTTACCATGGTCAGAATGCCCGAAAGTCACCATC
ACTAAAGCTTCCTTTCTCATCCCCTACTTTATCATCCTGGCTGTAGAAGG
GATGCCGCTCTATTACATGGAGCTATGTCTCGGTCAACGGCTAAGGAACG
GATCCGTTGGTGTCTGGCATCTAGTATCTCCTTACTTGGATGGTTTAGGA
TTTGCATCTGTTGTGATTTGTATCATGGTCTGTTTATATTATAATGTGAT
TTTATCATGGTGTTTGATTTATTTCGTCAACTCTTTCAAGAATCCTTTAC
CATGGTCAGAATGCCCGAAAGTCACCATCACTAAAGGAAATCAGACCTTC
CAACAGCCCAATGCTGAATGTGAGAAGGCAGGGCCGACCAGTTATTTCTG
GTATCGCACGACACTTGATATATCCGAAGATATCGAATCTGGTAATGAAA
TCAATTGGACAATCGCGTTCAGTTTGTTGTTCGCTTGGTTGGTCGTTTGG
CTTTGTATGGTGAAACGAATCAAATCGGAGGGCAAGGAAATCAGACCTTC
CAACAGCCCAATGCTGAATGTGAGAAGGCAGGGCCGACCAGTTATTTCTG
GTATCGCACGACACTTGATATATCCGAAGATATCGAATCTGGTAATGAAA
TCAATTGGACAATCGCGTTCAGTTTGTTGTTCGCTTGGTTGGTCGTTTGG
CTTTGTATGGTGAAACGAATCAAATCGGAGGGCAAGgtAGTGTACGTGAC
TGCAACATTACCCTTGATCTTGCTTGGTGCAATGTTCTTCCGTGGTGTCA
ATTTGGACGGCTTTCAGCAAGGACTTGCCCTTCTCTTTGTTCCCGAAgtA
GTGTACGTGACTGCAACATTACCCTTGATCTTGCTTGGTGCAATGTTCTT
CCGTGGTGTCAATTTGGACGGCTTTCAGCAAGGACTTGCCCTTCTCTTTG
TTCCCGAATTCTCAAGATTGAAGGATCCTTTGGTCTGGTTAGACGCTGCC
ACACAAACATTCTACTCTCTCGGTATCGCATACGGATCTCTGATCGCATT
TGCAAGCTACAACCCGCTAAAGAACGACACAACCAGAGATGCTATCACCA
TCTGCCTCATAGATGCTGGAGTCAGTGTCTATGCCAGCGTTGTTATATTT
TGTTTCATTGGGTATCGTGCTGAGTTGAAAATGCACGATTGTCTCGCCAT
GTTGGGGCTGAACCATACAGAGTCGGAATCGTACGAAATCTTCGTAGGGA
ATGCTACTGTGAACGGAAATATAACTGAAATCGTGTGTAGTAAAAAGGAA
TTCCTTGCAGAGTTCTCAAGATTGAAGGATCCTTTGGTCTGGTTAGACGC
TGCCACACAAACATTCTACTCTCTCGGTATCGCATACGGATCTCTGATCG
CATTTGCAAGCTACAACCCGCTAAAGAACGACACAACCAGAGATGCTATC
ACCATCTGCCTCATAGATGCTGGAGTCAGTGTCTATGCCAGCGTTGTTAT
ATTTTGTTTCATTGGGTATCGTGCTGAGTTGAAAATGCACGATTGTCTCG
CCATGTTGGGGCTGAACCATACAGAGTCGGAATCGTACGAAATCTTCGTA
GGGAATGCTACTGTGAACGGAAATATAACTGAAATCGTGTGTAGTAAAAA
GGAATTCCTTGCAGAGCTTTCACAATCGACTGGTCTTGCCTTCATCACCT
TCACCGATGCCATCAACACGTTGCCACAAGCTCAAATGTGGTCCATACTG
TTCTTCCTGATGCTTCTGATGCTAGGTGTAGACACACAGTTTGGAATGTT
GGAAGGACTATTCACGCCGCTCTTTGATGCGAACCCGTTTCCAAAACTGA
GGAAAGAAATTGTGACAGCTTTCACAATCGACTGGTCTTGCCTTCATCAC
CTTCACCGATGCCATCAACACGTTGCCACAAGCTCAAATGTGGTCCATAC
TGTTCTTCCTGATGCTTCTGATGCTAGGTGTAGACACACAGTTTGGAATG
TTGGAAGGACTATTCACGCCGCTCTTTGATGCGAACCCGTTTCCAAAACT
GAGGAAAGAAATTGTGACAGGAATCGTCTGTCTTGCTATTTACTTACCAA
GTTTAATCATGACACAGCATTCTGGTAACTATTGGTTACAAATCATTGAG
AATTATTCGGTTGGAATTCCGTTGCTGGTGGTGGCGCTATGTGAAGTCAT
CTCTATATCATATCTGTATGGCATTGAAAGGAATCGTCTGTCTTGCTATT
TACTTACCAAGTTTAATCATGACACAGCATTCTGGTAACTATTGGTTACA
AATCATTGAGAATTATTCGGTTGGAATTCCGTTGCTGGTGGTGGCGCTAT
GTGAAGTCATCTCTATATCATATCTGTATGGCATTGAAAGGTTTTGTAAT
GACATTGAGTATATGACAAACAAACGACCGAACAAAATTTGGGTGATATG
TTGGAAGATCATTTCACCAGCCCTCATTGTTTTTGTGCTCATCTTCAGCA
TAAAAGACCTCTGCACCAAATCACCAACCTATCAAGTGTGGGTAGCACGT
ATGGTTTTGTAATGACATTGAGTATATGACAAACAAACGACCGAACAAAA
TTTGGGTGATATGTTGGAAGATCATTTCACCAGCCCTCATTGTTTTTGTG
CTCATCTTCAGCATAAAAGACCTCTGCACCAAATCACCAACCTATCAAGT
GTGGGTAGCACGTATGGCAGAAGGGAAATACGTTGAGCTTCCACCGTGGG
CGATCGTTTTTGCTGTTCTTCTCATGTTTTCTTCGCTCATCATGATCCCT
GTAGTCgctcttttgaaatatttcaaaatcatcaAGAAGGGAAGCAGCCC
TGGGAGACTGGGACTTAGTTTAAGTAAAAAGACACGTGGTAGGAAACAGA
GGAATGGTAACGATATAGCTTCTGTTCATCGGCCCCTTCAAGCCATGGAA
AGTAATACGTTTTCAATGGCCACTGAGTTCTCTGACAACATGTTCAAGTT
GTGAGCAGAAGGGAAATACGTTGAGCTTCCACCGTGGGCGATCGTTTTTG
CTGTTCTTCTCATGTTTTCTTCGCTCATCATGATCCCTGTAGTCgctctt
ttgaaatatttcaaaatcatcaAGAAGGGAAGCAGCCCTGGGAGACTGGG
ACTTAGTTTAAGTAAAAAGACACGTGGTAGGAAACAGAGGAATGGTAACG
ATATAGCTTCTGTTCATCGGCCCCTTCAAGCCATGGAAAGTAATACGTTT
TCAATGGCCACTGAGTTCTCTGACAACATGTTCAAGTTGTGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_009323	XLOC_009323-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000098_pilon	genome	sc0000098_pilon:777580..784932 +

Properties


Property Name	Value
Aaloc	1609-1896:7066
Aaloc	1447-1608:6556
Aaloc	1288-1443:5321
Aaloc	1084-1284:3776
Aaloc	730-1083:3118
Aaloc	619-729:2771
Aaloc	421-618:1937
Aaloc	142-417:671
Aaloc	1-138:1

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XLOC_009323 (mRNA) -