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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000322_pilon:233341..238805+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_006435 ID=XLOC_006435|Name=XLOC_006435|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5465bp|location=Sequence derived from alignment at sc0000322_pilon:233341..238805+ (Clytia hemisphaerica_ch_hm2_pilon)
AGTTTTTACCATTCATTACATGACattgtgaaataaaaaaaaatgggtGT
TTGCAAGtgtaaacaaagaaatgttacgAATCAATTTTGTTATGGATGTC
GTGTGAATGTTTGTGAATCCTGCATGATTAAAGATCATCAAAGGGTAAGG
TTACTTTTACCAAGGTCATTTTAATAAAGTCAATGGGAACCTTGTTTggc
ctttttgttttctttcagttAAAATATGCCATTTTAGAGATgtaaaaatg
ggtcaaaattaGTTTGGATACTGAAAGAAAACTATTAACAAGAGATATTT
AAGTTTCCCTTCAAATGATTCTTCCTTACAGCTACCAGTTTtaaataaac
acccctccttCAGGGGGAGGCGTTCGTTTtaaccaggggatgtcaatcga
aaatttcgattgtcgaaccaatcaaatataatcgaaatcaatcgaagtga
ttgaccaaatcgatcgaagtcaatcgaagtgAATGATCGAAacgatcgaa
gtcaatcgaagatttacatctttttaagattgatttggttcgattggctt
cgattgattcggtcaatcacttcgattggtttcgattataTTCGATTGGT
GCGACAATCGAagttttcgattgacatcctcTGGTTAGTACCGTCTGGCC
TGGGTACTAATAATGACTTATAAATGctcaaaaactatttttcaaacTCA
GGCGCATACTATTAACCTACCATAAAATCTCTTTAGAAAGttctaaaaga
tttttaaaagtacTGaaaaaaaCACATCATAATCAATCCATCCAGCATCA
ACCAACCGATCGAACAATCAaaaccaatcgaagtgattgatcgaATAAAT
CGAATCCAATCAAAGACGATCAAAGATTTAcatatttttcccattttgat
tgaattcaattgttcgatcaatcacttcgattgagttcgattgattcgaa
cAATCACTTCGATGTACTTCGATTGAATTCGATCGATTCGACTCCAAATC
gaattcgattgagttcgattgacatcccctggttttaaagggggcgttta
tcaaaaatttctcctTTTATAGGTAGGGAGGGgcatttattcgaagtaat
acggtagtcAAAATCAACTAGTCCagaaatcagaaaagacagagttagag
atagaaaatagagaaaaagaggagatgggcagaatgagagattgaaacta
gatCTTTCTGTGATGTGCAGACCAGCTTGGTTGAGGAATCTTGATTGggg
gcaatcacaaatatctttatTTCTTACATGTCCACATTCTACAGaggcca
actctcacgcattgagCAAGCgcctcacacaatttttgaaaaatttgatt
tctcacatgttttccattttttgagaaagtttttgactttttatggAAAG
ATGTTTCCCCAAATGTTTGATTTATTTGGAGTTTGTGCTACCATTTACAC
CCAgcaaacagcaaaaaaaaaccaCCCTGatgtgttttttcgatttttaa
gaaaGCTTTTCCAATTTATCTTTGGAAAAAGATCCCCTGATTTCCAATTT
CGGAAAATCAGAGAATCTAGATTTTGAATTTCCCCTTAAAATTTCTATCT
CATACAAAATGAACATGATGAACATAAGGTCTACAAAATAcctttatttt
tagaaagttaAAGAAATTAATCATGTAGAGAAgagaatctgaaaatttta
ccAAGTTGAGGCACACTTTTTCTTTGGGGATGGATGGATGGAAAGACCTT
TTCTTAATCACAATGGCACGTCAAATAGACATTTTTCTAATCAGGGTGTC
AATTTTAATAGTTAAAAACTGCAACTTCAAAGCAatgatgagaaaaaaat
attagtcaaataaatctaataaaattaaataaatacaaacttaaaaaatT
CACTACACGCTCTTTCTACAAACAATATCACTTAAACAAATGTACCTACA
AGATAATGCTGAAAGACATGAGTGAAAAAAGGTCTAATTAATGAAAGGCA
TTTTCCTCGTCTAAAAGTTCATGACATTGCTTGACTATAGACCTTTTTGC
AATATGTCATTTATGTTGAATATAGAAACTCCAACCCAGTTCAAACATAA
ATTATaactttgatattttgttgtttcCCTTCCATTCATTGAATCAAGAA
GCTATCAGGATTTATGCTGaagtttttcaattatttattattacaTCAGA
TGACTTTGTGATAAGGGAAAGGTCTAACTGGATAGTGTCTAcaaatcaga
aagtttcaaCATGACTTGTTTGCATTCTGATCTAGCCAGCTAACATGATT
TTGAAATCCAAACCAAAAGATTCTGCTGTTTGGAGGCCATTGCAGTTACC
CCTtgcttattaaagctatctcaAGTGATGGTACTAATTTTAAAGCCAAT
AGGTAATAGAAACATTATTCCATGTATCATTTACTaaaaaaaaTCCTTTC
TGACTTTCTTTAGTGTATCATCAAATCATATGTACATTGGCTTCAAGACA
GTGATTTCAGTGCTACTTGTTCTTTATGCCTGGAGAGTATCGATAAAGGA
GAAGTGATAAGGCTAACATGTTACGGTATGTATGTTTCTCCTCATTATGT
TCTTTTCTGTTCTATTACAATTTGAAAGTATTAAAAAGATGAAGTTagtg
ttttctttctttatgtatttttgtacATGGCTTTGCTCTTCATTGAGCAA
TTTGTAACATCAATTACaaattaaactaaaaaatttttgaaaaagaaaac
tattTGAATCTCTTCAAATCtttaatttaatgttttttctcatCAAAAGA
TTTGTTTCATTGGGATTGCTTCAATGCTTGGGCATTAAAACTTCCAGAGT
CAACTCCAAAGACTGGCTACACATGTCCTGACTGCAAAGTAAGGAAACTT
CACGATCAATATTTTATAGCAAACTCCATTTATCTGCTCAAATAATCAAG
ATTAATTTAAGATTTGAAGAGGCCAAACGTCATTATTTTCAAAGCAATAT
TTTGTTTATGGTTTCCCATAAGAAATACTTTTCAAACAGTCAAATATAAA
CATAGTACATCCAAATACACTTGCTATCCttttttttCAGGCACAAATCT
TTCCACCTAAAGCATTAGTTTCACCAATAGCAGACGTTTtgcgtcaaaaa
ttttcaacagttgGATGGGGACGAAAAGGGTTAGGTCTACCACTACAAAC
TCATGAGCAGGTATTTTGATTAAAATCTATGCTAtgtctttgatattttg
cttgtTTCTGTTGTaagaattttagtttttttaccGTGGGGAATCTagaa
atagacattgatttttctgtttgaccaaaattcaatcccataaccctttg
cgtttattacacacaaagaaaaagtaataactttcacaacttttgaatta
agacgaaaaggattgtgggattgaattttggtcaaattagagaagtaata
atcatgacattTGCATTTAACAAAGGGCTATTATGTAAGTCAAAAGgatt
tgaagaattgaaagaaaaactaaattagcaaatcaaaaaaagtgatcTTC
ATCAATCttctttaaaaatcattttctgtATCTCAAGCCCACATCTCATC
CTTGTTATGCTCAAGGCtcaaaataacgatttcaagtgggttgctcggac
aaaatgtccgatcagggttgctttagcttgaaaattatgatttttgggtc
ggacatgaagctatttgggtcggacaatgtccgatgtccgaccgttattt
cgagccctgtatgcttaaagatattttcttttttttcttccagaCGTCAC
CAAGGCCCACCACTCCAGGTATGAATTATCCTGTGTTTTGATTGTAATAT
CTGTAGTTCTTGATTTTAACAATATTCAATTTCATAAAGGATGTGATAGT
GTTGTCTGCCTTCTTGTCTTGTCTGGTTTTTGGAGatatttgtcattttt
attataattatgTCAAGCTTTTATGATATATTTCCTGGTTGAACATACTA
GAATTTTTATAGATTTACTATCGTTTAGCTCCAAAAGTTTCCTTAATTCC
TAAGATTTCCATATATTTTTCCTAAGGGGAAAATCCAAAGTTCTAATTTG
GCTTTTGAGCTCCACATCACACCTTTCGTATTTGGTATGAAAAGAAAGGG
GTGATGTTTTTAATTGATTCCAATTCCAAAACCCTTAATAATACTTTCTA
ACATACACATTTCCTAATTATTTCAGTATTAAGTGATACGCATCAACAAG
TATCATCCACACCTAAATCAAGTTACAAACCGTTAGCGTCTGTCACTCCT
TTCGTACCTCTATCCAACAAACAGCAACAGAAAATCGaacaacataatgc
atatcaaacacaacaaaacctttcaaatacacaacaacatcaacaaacac
atgatacaaaaccatcgcaacaaTCATCTATGTTTAGTAGAGATAAATAC
CCGACTGAAGGTATACAACATTTATGCATTGCATCATTCATTTTCACATT
AGATAAGGCTGTTTGTCGTCAAAATTTCCGTCAGAGTGTCCAGTTGTTGA
Cttctaaaatcaaaatcgtgtttttggtttaatttagattttcgaacgtt
taaaatttgaaacaaattcTATTTTGAGAAATCCCTCAAAAGGGACGTTA
TTAACGGACGCACATTACTTTTGCTTCAATTAATCCCATTGCCTAGGAAA
TGGAGTAGCGACCAGTGTTTATTAGATTAATTCATATTTATTCGATGGAT
TCATATTCGttttcacatttttctattcACTCGTAGGCACGTTATCACGG
AAACAAGCACCAACGACACGATACGAAGAATCTAAAATCAATTTATCGTT
TGATCACgatgaaaataaatataaacgAAAAGGTTTCATGCATTGGCTCT
CTAACATGATGAGGTGAATTatgtttttagtatttttttacaATTCCAAT
TTGTTAATTACAAAATGTATTTCTTTGAAGGCTAGGTTTCTGCTTTGCCT
CTGATCAAATAGTGTAAGTGAAACTGTCTGACTCGATTCTATGatttatt
tcaaacaaaaaactgaTAAGTTTCTATTGATCTCCGTCTTTGATATTGGA
TTTTTGTTCAAAGAGACTTTTAAGGTTTTGCCAATCGTAGGAAACCATTG
CAACAATATTTTTGGATCTAAGAGATAAGGTCATTTTGATGGTGGCGTGA
aggtaatgaaaatttttttctcctgtcTTTCAGGTTATGGAAAAAGCCAG
GCGAAATAAAGAAAGAAGCCAATATGACGTATAAACGAGTATTCATCGCT
TTAGTGTTATTTACATTGATCTTTATGACTGTTATTTATTTCATGTCTGC
CCTGGGTGGAAGGGTCGCTGAAAATGACCCATTGTTAGATCCAGACCTCA
ACAGATTTGTAAAAGTTGGTAATAATCATATTGGTGGCGTAGGCGGTCAA
GATTTAACGATGTga Coding sequence (CDS) from alignment at sc0000322_pilon:233341..238805+ >XLOC_006435 ID=XLOC_006435|Name=XLOC_006435|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2166bp|location=Sequence derived from alignment at sc0000322_pilon:233341..238805+ (Clytia hemisphaerica_ch_hm2_pilon)
AGTTTTTACCATTCATTACATGACattgtgaaataaaaaaaaatgggtGT
TTGCAAGtgtaaacaaagaaatgttacgAATCAATTTTGTTATGGATGTC
GTGTGAATGTTTGTGAATCCTGCATGATTAAAGATCATCAAAGGAGTTTT
TACCATTCATTACATGACattgtgaaataaaaaaaaatgggtGTTTGCAA
GtgtaaacaaagaaatgttacgAATCAATTTTGTTATGGATGTCGTGTGA
ATGTTTGTGAATCCTGCATGATTAAAGATCATCAAAGGTGTATCATCAAA
TCATATGTACATTGGCTTCAAGACAGTGATTTCAGTGCTACTTGTTCTTT
ATGCCTGGAGAGTATCGATAAAGGAGAAGTGATAAGGCTAACATGTTACG
TGTATCATCAAATCATATGTACATTGGCTTCAAGACAGTGATTTCAGTGC
TACTTGTTCTTTATGCCTGGAGAGTATCGATAAAGGAGAAGTGATAAGGC
TAACATGTTACGATTTGTTTCATTGGGATTGCTTCAATGCTTGGGCATTA
AAACTTCCAGAGTCAACTCCAAAGACTGGCTACACATGTCCTGACTGCAA
AATTTGTTTCATTGGGATTGCTTCAATGCTTGGGCATTAAAACTTCCAGA
GTCAACTCCAAAGACTGGCTACACATGTCCTGACTGCAAAGCACAAATCT
TTCCACCTAAAGCATTAGTTTCACCAATAGCAGACGTTTtgcgtcaaaaa
ttttcaacagttgGATGGGGACGAAAAGGGTTAGGTCTACCACTACAAAC
TCATGAGCAGGCACAAATCTTTCCACCTAAAGCATTAGTTTCACCAATAG
CAGACGTTTtgcgtcaaaaattttcaacagttgGATGGGGACGAAAAGGG
TTAGGTCTACCACTACAAACTCATGAGCAGaCGTCACCAAGGCCCACCAC
TCCAGaCGTCACCAAGGCCCACCACTCCAGTATTAAGTGATACGCATCAA
CAAGTATCATCCACACCTAAATCAAGTTACAAACCGTTAGCGTCTGTCAC
TCCTTTCGTACCTCTATCCAACAAACAGCAACAGAAAATCGaacaacata
atgcatatcaaacacaacaaaacctttcaaatacacaacaacatcaacaa
acacatgatacaaaaccatcgcaacaaTCATCTATGTTTAGTAGAGATAA
ATACCCGACTGAAGTATTAAGTGATACGCATCAACAAGTATCATCCACAC
CTAAATCAAGTTACAAACCGTTAGCGTCTGTCACTCCTTTCGTACCTCTA
TCCAACAAACAGCAACAGAAAATCGaacaacataatgcatatcaaacaca
acaaaacctttcaaatacacaacaacatcaacaaacacatgatacaaaac
catcgcaacaaTCATCTATGTTTAGTAGAGATAAATACCCGACTGAAGGC
ACGTTATCACGGAAACAAGCACCAACGACACGATACGAAGAATCTAAAAT
CAATTTATCGTTTGATCACgatgaaaataaatataaacgAAAAGGTTTCA
TGCATTGGCTCTCTAACATGATGAGGCACGTTATCACGGAAACAAGCACC
AACGACACGATACGAAGAATCTAAAATCAATTTATCGTTTGATCACgatg
aaaataaatataaacgAAAAGGTTTCATGCATTGGCTCTCTAACATGATG
AGGTTATGGAAAAAGCCAGGCGAAATAAAGAAAGAAGCCAATATGACGTA
TAAACGAGTATTCATCGCTTTAGTGTTATTTACATTGATCTTTATGACTG
TTATTTATTTCATGTCTGCCCTGGGTGGAAGGGTCGCTGAAAATGACCCA
TTGTTAGATCCAGACCTCAACAGATTTGTAAAAGTTGGTAATAATCATAT
TGGTGGCGTAGGCGGTCAAGATTTAACGATGTgaGTTATGGAAAAAGCCA
GGCGAAATAAAGAAAGAAGCCAATATGACGTATAAACGAGTATTCATCGC
TTTAGTGTTATTTACATTGATCTTTATGACTGTTATTTATTTCATGTCTG
CCCTGGGTGGAAGGGTCGCTGAAAATGACCCATTGTTAGATCCAGACCTC
AACAGATTTGTAAAAGTTGGTAATAATCATATTGGTGGCGTAGGCGGTCA
AGATTTAACGATGTga
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000322_pilon | genome | sc0000322_pilon:233341..238805 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 874-1104:5235 |
| Aaloc | 748-870:4789 |
| Aaloc | 514-744:4229 |
| Aaloc | 487-510:3794 |
| Aaloc | 367-486:3091 |
| Aaloc | 280-366:2802 |
| Aaloc | 166-276:2464 |
| Aaloc | 37-165:16 |
| Aaloc | 19-33:1 |
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