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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000417_pilon:80572..86566+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_005894 ID=XLOC_005894|Name=XLOC_005894|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5995bp|location=Sequence derived from alignment at sc0000417_pilon:80572..86566+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGCTGCTGGTTTTGGCAACATTTTGCGTTGCTTTTGCATTTGCTAC
AGATGTTGAGGTAAATTGAATTGTTGTCATTCTGGATAGCGCTAAGCGTT
CCCACTAAAGAGTAGAACTTGTGCCCTGAAGGTTAGGGTTCATTTCATAT
TATATAATCAATTCTCCCTTAGTACATATAAATCGAAAATATAATTTGCT
CGCACAAATATAATCGAAGGTAGTAATGATCGTTTCAAATTCATGAAGGA
GACTTTTGTTCAATTCAATACGATTCGAATTATAGATATTCGCGATTACA
GAGAATTCATCCTCATTGTTAAATATCATTGCCTTATCAGCAGAAAACAT
TCCGAATTCTATCAGACCAGCCACCAAAATTTTCCTGAAATCAGATCTTT
GtactttaaattctttttagGAGCATTTAGAGAAATTTGGATTTATgaat
aaatttcaatttgatGGAAGTTCAATCAAACATGCACTTGAGAAGTATCA
AAAAGCTTTCAACCTTCCAGTGTCTGGTAAGAATTAGTACTCCGACCTCA
CTGCTCAAAAGATTTAGATCATGTTCAGAGGTTATAACAATTCTGTTCCG
CTCCGAAATAAAATGAAGCCTTTCTATAGAAACGGAACGGTCACGTGCGA
ACATAGTCTTAGCTTCTCATTATCAGGATTCACCGAAACAATGAGGGTTC
TTAGTATCCTGAACAGAACTTAATAATGCGAGATTCGTTAACAGGCATAA
CTGAAAGTCGAtaaataaacaagaaaaatgaaatacaaTGAAGCAATGCA
TAATTAAAACTCCCAGTACTTAGACAAAAATGGGTACTGGGTATGTGCAT
GTCATGTGAGtcgttttttcaattttaaaagtcTCACACTGTCGGACaaa
tcagaaatttttaaaCCTAAGGGTCGGTAAATtgcaaaaaagtctctcta
ataccctgagtatcagaggttaagttttcaaagaatatattaacctctga
agaccaataatagaaattttatcgcacatgtgtcaatctaatcactgtag
aaagaatcaaagatgaagagcaaatattaccttataaatgtctagcagac
tgtatcatcagtatgcagtttactatttacgaattcacCAGAAACCTcta
agtgtaattgaagtgagtttctttcgaaagaaatcttttacatgatcccc
aaatgtataacagtaattactaaactattaattatggaaatgtcacttta
attgaattgaaataatagacagactttatgttatgattctctatcagatc
actgactctttttaaaaagcattgatgatattttttagttgtgttttcaa
cgacgggaatcaaaatataaactttgaacttcatccaagatcttggatgg
tcgtcatagttacttttgtcttcgttgattgcgcactgaatagaatctcg
attcgtcggcacagcgtcgatatatgatttcgacttgtgcttttcacggt
atctctctaagggtacgacttttttcaaaagtggaagaaaatgtttcaaa
aaagtctctctaagggtcaccttttcagcaaaaattagtCTCTATAAGAA
TCCCTCAACCCTAATACCCCCTGGGTACAGAATCGACAAATATGAAAATA
CTTTTATCTAGGCGTCGCCGATGAAGCCACAATGAAACTAATGGCAACAC
CACGTTGTGGTCGCCCTGACAACGATGCAAACAATCTTTTTGCTGACACA
GCATGGAGAAAGAAGGCTTTATCTTATTACTACAACAATTATACACCAGA
CTTGAGTCGTTCAGATGTCCGTTCTTTAACAGAGAAAGCTTTCAAATTCT
GGGCTGATGTAGCACCACTTCATTTTACAGAAAAAAGCGGCGGAGATATT
GTTGTCTCGTAAGTTTATGATTGATCCCTTAAGACATTCAAGTATGATTG
GAATTGGCaaaaaaaTAGGCAACTACTCCATTTTAAACCTTCATCTTCAT
TTCATTGTTCAGTTTCTGCCCTTATGTCAGCTCATTTGTCCATCATGGTA
GttttttttGCGTCTTTGAAAAATCCCAAGAAGAAAATCTGTGACGTTCA
CATCTGCTTATTTACGTAACATTCAGATAACgctggaaaaaaatcaaaac
atactCTTTATTCTTTACTGGGAAATATCTTATGCACTGGAAATCATCAT
AATTCATGaaataatgttttatacggaagcaatGACATGGGTATCATGAA
TTTAACACGTTCAACATTTGTGATCACATTCAACATTTGTGACCACATTC
AACATTTTGTGAccacattcaatatttttgtttacatttcatAGTTTCGG
ATCACGTGGTCACCACGATGGAAAAAGACAATGTGGATTTCCTTTTGATG
GGCGTGGTGGTGTTTTAGCGCATGCGTTCTTCCCTCCTGACGGTCGTCTT
CATTTTGACGAAGATGAAGGATATACTGCACGATCATCAAGTGGTAAGTG
ACCGATAGACCTCTATagaccctggaccaagttatatccgccatctttga
tcggagacTTTTTAAAAAAGGTGGTGTGTCTGCAAAGAATCCAATGTAGT
GTTAAAGTTTAGTCTAACGACAAACGGTACTCAAAAGTAGGATCTTCTCC
AATCAATTATTTTGCTTGGTCAGGATTTGGTCCATATCCCCggagggggg
cactcgattttgaaaacgaccgtatgTTTGGCcgaaaatcaggtctctaa
aatcggacccttacagtgcaggaaaaatttggctgaaagtCGACCCTTat
tatagtgcaatttttcgaaattgtttgcccttttcagggcaaaatatttt
gaaatttctcaaattttacctcaaaatttggtattttctcaaaatttaca
CCCTTAccgtgcactttccaaagtgcaaaaaacctacccttaagggccgt
aCGTCCGGTACGTCACTTAActtgagtaccccccccccccgggttccaTA
TTCAGCTCAGGTCATGGAAACttagaaaagtaatatttgAAGACTCGTGG
GattaattgttttaaaaagaggcAGTCGTTGCAATCAAAATATCACGGAA
AAACATAACTGAATCTCATTCGACAAAGGGTACTGTATACAATCATCAAT
GAGGAGTATAAAGATAGAAATAATTCGCTTGATTAGAAAAGACAGAGAGT
TTAGACAAAGTTGGTTTTTAGCCAATGACAAACTTACCCTATACCATTAA
TCTCCGCGTCCTTTAATCACTGTGAATATCTTTACTgataatatcaaaat
aataccgacaaacttttgtaaaaaaattactAAAGCTACGATGGCGTGAT
CTTTTTACTTCGATAAAGACGAAATACAGAACAGTTGTATAAGTCAGAAA
AAGTAATCGAATTATTACTAACTTTCAACTATTCTTTTAGGAACAAACTA
TCTTTGGGTAGCTACTCACGAGTTAGGTCATATCCTTGGATTGGAGCACG
ACACTAACAACCGTAACGCTGTTATGTATCCCTACTACCAACCATATCGT
GCCAACATGCAACTTCATAGCAATGATATTGCTCGTATCCAACGCCTTTA
TGGTAGAGGGCAAGGAAGCGTCAACGGAAATGGTGGATCAGGAGGGTCAG
GAGGGTCTGGAGGCTCCGGTGGATCTGGTGGTTCTGGAGGTTAGTCTGTT
TTCTATTTTTACTAAGTAGGGCTAATCGAAAAAACAAACTTTGAGGTTTT
TCGATTATAAGAACACCCCTGTGACAGAACCGGTTGGAACCCCATCCCGC
CCCTAGCTTCCGTCCTCGGTGGGAAATCACGTCACAATTTCAAAGTTAAT
CTCCCAGtgaaatgactttgatttcatccctatttgaaattcaatgaaag
aattgcacttcaaaaccatccgaACTAGTTTCTTTGACCTGGGAGCAATA
TAATTTTTGTACCCATTGCGATTTCGATATAGATGTTATACCCAACTGGT
GGAAGATAGGATGGTGGACAATAAACAAAGTACCAGTTATTGGAAGAAGG
ACCCAGCGTTGATACACGTGCGATGCGTGCTCTTGGCTTAAGTAATATTA
AGTGAAGAAAAAACCTTATCAGCTATCATCGGAGCAGAATCAcaaaaatc
caaagaaaacccatTCTCACAAATCCGGTGGgagaaattgaacaaaatat
cgtccccaatGGAAACTTATACTCCAACTTTGTTCCCCAGTTAATATAGT
CGAATGGAAAATTCTCGCTGCAATATATTGGGCTATTTTCCATCCCTATT
TTCCATTTTATATGACTTGAGACCATAATTTAACTTAAATCCTCAGCCAT
AAAACACATAGGAATATTATCCATATCGAGTTTTCATTCGGGCTTAATTT
CGGATATCTTACCGTTTTTGAGAATTGGAAGTTCGGACGAGATTTGCAAT
TTCAGCATTTCTACTTTATTTCATTTGATATTCCAATTTTGGAAGGATTC
AGTTGCTTCCAGCAGGATATATTCTCAGCCCTCTAGGAACAATGTCCTTA
GAAATCCTGAGAACCTAAGgtcctgagttttaagtctcatgttaaaactc
agactTAAGACTACACGCTCAGGAAGTAAATGAGAGAACTCATTTGTTGC
GTTTAAAACCTTAGGGGATTTcccctttttttcaaatatcatgGACTTTG
TTGCGGGTTAGTAAGAACGGGATGTCCAATTGGAAATCAAAGCACATTAT
TTTGCTTCGAAATGGTATGGAATGagaatgatttcaaaatttcactttag
aataaaatttgttgacaaaacaaaaaaggctCAATTCAATATAAAGCTTT
ACTTTAAATCTATTTCAATTTCAGATTGTAAAGATCTTCAagcatcttct
ttttgttcATCCAAACGGGATGGATGCTCCAAATGGGGTAACGACTGGAA
ACGTTATATGGAGAAGAACTGCAAGAAAACATGTGGCTTCTGCAGTGGTG
GTGGAAGTGGTGGAAGTGGCGGTAAGTGTGGTTATTGAATTCATGTTTGT
GTATTCTATTGTATAGCTATCTAAATACATATCAATTTTTGGAGACTTTC
CCTCCCAAACTCTACAACATTCCATGCAAGCCCTCTATAAAGATACAATG
TAAGTACGAAATATCAATAGTTGTCATCCTTAGCTGCCATCTGGACGGTC
CGATGTCGTCCGTTTAGAGGGTCAGTGAACGCGGGAAAATATATAAGCGC
GAAGTCAGGGCGTCAGAGCGGGAAAAAAAATGGCGGTAGAGTTTTGGAAC
CTCCGCCACTGTTTGCTCCGCCCCAAACTAAACTTGTCTTCAAATTTATC
CCGCCTCCTGAATTATTCCCATGTGTAGACGATAGGATCCTCTAGGGGGG
GGGGCACTCGTTCTGAAAACGACCATACGTTCAGCCCAAAAATTCACTTT
CAAACCGAACCTTTACAATGCAGAAATAAGCTACGAAGTTTGACACCCTT
ATAGTGCGAAAACCGACAAAAAGTACACCGTCATAGTGCATAACTCTCTC
CACCAGACCTTTCTAATGGAACACCTCcctttcaaaaatcttttaagacA
CACAGAGatatacatattatatacatatatactTATGTACAAGAGCGCGA
GCATGGTGCTAGTGAATAATTTAGtttaaaaatcgacccttaagTGCCGT
ACGTCTGGTAAGTCTTTTACCTTGAGTGTCCCCCTCTGGGCCCGACATTG
ATACCCACCGTGTCTCTaggattcacttggcaagttaTTCCTACTCCGGT
AggcattcggagggctcatatcatctCTATTTTATCTCTATTTTGTAACT
TTGTAAATGATTTATATTTTTCGTCTCAGATTGTAAAGACACAGTAACTG
ATTGCCaaaaaaaTATCCGAGGATGCAGCAGTTGGGGACAAGCCTGGATA
GACTACAtgaagaaaaattgtaaaaaatcatgCAATTTCTGTTAA Coding sequence (CDS) from alignment at sc0000417_pilon:80572..86566+ >XLOC_005894 ID=XLOC_005894|Name=XLOC_005894|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2148bp|location=Sequence derived from alignment at sc0000417_pilon:80572..86566+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGCTGCTGGTTTTGGCAACATTTTGCGTTGCTTTTGCATTTGCTAC
AGATGTTGAGATGAAGCTGCTGGTTTTGGCAACATTTTGCGTTGCTTTTG
CATTTGCTACAGATGTTGAGGAGCATTTAGAGAAATTTGGATTTATgaat
aaatttcaatttgatGGAAGTTCAATCAAACATGCACTTGAGAAGTATCA
AAAAGCTTTCAACCTTCCAGTGTCTGGAGCATTTAGAGAAATTTGGATTT
ATgaataaatttcaatttgatGGAAGTTCAATCAAACATGCACTTGAGAA
GTATCAAAAAGCTTTCAACCTTCCAGTGTCTGGCGTCGCCGATGAAGCCA
CAATGAAACTAATGGCAACACCACGTTGTGGTCGCCCTGACAACGATGCA
AACAATCTTTTTGCTGACACAGCATGGAGAAAGAAGGCTTTATCTTATTA
CTACAACAATTATACACCAGACTTGAGTCGTTCAGATGTCCGTTCTTTAA
CAGAGAAAGCTTTCAAATTCTGGGCTGATGTAGCACCACTTCATTTTACA
GAAAAAAGCGGCGGAGATATTGTTGTCTCGCGTCGCCGATGAAGCCACAA
TGAAACTAATGGCAACACCACGTTGTGGTCGCCCTGACAACGATGCAAAC
AATCTTTTTGCTGACACAGCATGGAGAAAGAAGGCTTTATCTTATTACTA
CAACAATTATACACCAGACTTGAGTCGTTCAGATGTCCGTTCTTTAACAG
AGAAAGCTTTCAAATTCTGGGCTGATGTAGCACCACTTCATTTTACAGAA
AAAAGCGGCGGAGATATTGTTGTCTCTTTCGGATCACGTGGTCACCACGA
TGGAAAAAGACAATGTGGATTTCCTTTTGATGGGCGTGGTGGTGTTTTAG
CGCATGCGTTCTTCCCTCCTGACGGTCGTCTTCATTTTGACGAAGATGAA
GGATATACTGCACGATCATCAAGTGTTTCGGATCACGTGGTCACCACGAT
GGAAAAAGACAATGTGGATTTCCTTTTGATGGGCGTGGTGGTGTTTTAGC
GCATGCGTTCTTCCCTCCTGACGGTCGTCTTCATTTTGACGAAGATGAAG
GATATACTGCACGATCATCAAGTGGAACAAACTATCTTTGGGTAGCTACT
CACGAGTTAGGTCATATCCTTGGATTGGAGCACGACACTAACAACCGTAA
CGCTGTTATGTATCCCTACTACCAACCATATCGTGCCAACATGCAACTTC
ATAGCAATGATATTGCTCGTATCCAACGCCTTTATGGTAGAGGGCAAGGA
AGCGTCAACGGAAATGGTGGATCAGGAGGGTCAGGAGGGTCTGGAGGCTC
CGGTGGATCTGGTGGTTCTGGAGGAACAAACTATCTTTGGGTAGCTACTC
ACGAGTTAGGTCATATCCTTGGATTGGAGCACGACACTAACAACCGTAAC
GCTGTTATGTATCCCTACTACCAACCATATCGTGCCAACATGCAACTTCA
TAGCAATGATATTGCTCGTATCCAACGCCTTTATGGTAGAGGGCAAGGAA
GCGTCAACGGAAATGGTGGATCAGGAGGGTCAGGAGGGTCTGGAGGCTCC
GGTGGATCTGGTGGTTCTGGAGATTGTAAAGATCTTCAagcatcttcttt
ttgttcATCCAAACGGGATGGATGCTCCAAATGGGGTAACGACTGGAAAC
GTTATATGGAGAAGAACTGCAAGAAAACATGTGGCTTCTGCAGTGGTGGT
GGAAGTGGTGGAAGTGGCGATTGTAAAGATCTTCAagcatcttctttttg
ttcATCCAAACGGGATGGATGCTCCAAATGGGGTAACGACTGGAAACGTT
ATATGGAGAAGAACTGCAAGAAAACATGTGGCTTCTGCAGTGGTGGTGGA
AGTGGTGGAAGTGGCGATTGTAAAGACACAGTAACTGATTGCCaaaaaaa
TATCCGAGGATGCAGCAGTTGGGGACAAGCCTGGATAGACTACAtgaaga
aaaattgtaaaaaatcatgCAATTTCTGTTAAATTGTAAAGACACAGTAA
CTGATTGCCaaaaaaaTATCCGAGGATGCAGCAGTTGGGGACAAGCCTGG
ATAGACTACAtgaagaaaaattgtaaaaaatcatgCAATTTCTGTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000417_pilon | genome | sc0000417_pilon:80572..86566 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 961-1074:5882 |
| Aaloc | 814-957:4877 |
| Aaloc | 565-810:3443 |
| Aaloc | 415-561:2346 |
| Aaloc | 169-411:1664 |
| Aaloc | 61-165:421 |
| Aaloc | 1-60:1 |
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