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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000018_pilon:2107956..2112612+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_005298 ID=XLOC_005298|Name=XLOC_005298|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4657bp|location=Sequence derived from alignment at sc0000018_pilon:2107956..2112612+ (Clytia hemisphaerica_ch_hm2_pilon)
atgttgaaattcAAATGGCTATTACGAGCAGATGGACCAAAATGTGCGAG
AGTAAGTCAAATTATTTACATACCCGTATCACATTTCCCTCCATTAAATT
GACCAGGTGTTAATACACTCCCTTCTACAGACCCAATGAGACCcttttcc
actggaaaaattagccaaaatatcgtccctagtGGGAAATtgtactctaa
tttttgtccccactataaaataatcaattcaacctaatcctcactgaaaa
atatCGTGCTATTTTTCTCATCCCCACTAAATTCTCTGACTTGAAAACta
tggaatttaaatccccagtcataaaaaatatgggaatatcaatccccatc
aagtttcagtccgTATTCTTACCCCTAACTGactgaaaaatcctaccggg
tctgtgatgTTAATGGAGCCAGGTTGGGTaaaaaaaaCATATCCTGAAAT
TTTACTCAAATAATGAAATCGCGAACCCATTAGGGATAAAACTCTAAATT
GCTCTCACAGGTTGTATATTTCAGCATGTGATTCTCAAGTGGAATCAAAT
ACTACCAGTGGAGAGATTggggaaaaaggagggaaaggggaaaaaaggga
aaattgaTTAAATTATTCCTCGCTTATTCGAATCCCTCTATAATTCGAGC
TTATTTCCCAGTCCATTTCAAGAAGAAACCcctttaaaatactttctata
atccgattctctctgtaattcgaacaaattatatTCCCCTTTCGAGTTCA
AATTAGGGAGAGTCAATTGTATCAAttatttacatttacatttggCCGCA
GTTCTATTCAGCAAAAGTTGGGAGGATtctcaaaaattcaaaagtagCGT
CATCAATGCATATCAACGAATTAAAATCAATTGACCAATCACAACAACCA
ATAATCGAATGTCGAGACAAAAAATACCTTGCAGGATCTACATcaaagaa
ttttccaaaaacacTTCCAATATACCTCCACAATGAGTTCAAAGCTATAG
AACTCTCCAATCAACACAATAACATTTTAGATATCGGTGCAAATTTACGA
CCAATCTTAGATGATATTTTTAACCACGAAAATAAATCTGCTGTTTTGAT
CAAAAACTTGCCAATCACAAAAACAGATCATTTTCATGACTTTATGAAAG
GCTGTGATTACCAACCTATGACGTATGAATCAGGATCGGCGTATCGGGCA
TCTGTCAATGACTTGGTCTATTCAGCCAGTGATGAGCCACCTGAATTCTC
AATCGAGCCTCACAATGAAATGTCCTATTTGTCGCAATTCCCTCAAAAGG
TAAActctattttcaacttttgccATACTTTAACGatagattttgtgatt
ttgagtaGATATAATATGGCTCCTGCACGAAAATTTGTACCAGGGAAAAG
ATCCAAAACGCAATATTCTTAACACCACTCCCCTTACAGGGATAGCGAAC
ATCGAAATACAGATGCATTTTTCTTCGTCAACACCGACAGAGAAAATAGc
taaaatccttattttgtcaCCATATGGCAAGTTTGACGCCAAAATATGAC
CGTCAAACACTAAAACACCGACGAGACACCAAAATTTAACTAATGATGCA
GAGCAACAATTCTgaacaatttaataaaaaaattcgacatttttgatgac
gtttgcacattttgatatattttcatttttgagaaTTGAAGTTATCGTCG
TCTTTTTATTATGACGTTAATGAAACCGCTTCTGTGACGTGtttttttCC
ACGTATTTTACAAcgtaaatatcattttttagctgaTATTTTGAGACAAg
gtcattttaaatttttgacccagcactttttgAAATCCTCTCGTTAATAC
GATCTGTAAAGCTATACATGGCTTGATCAAAACGGTAAGAAGCGGTCGGC
GTGAcgaaaaatatgttttagacTTGCCTTAACTTACCAGAGGGGGCTAA
TACCGTCAAACTATCAAACCGGTACGCCCTCCTATCAACTTTATTTTGTT
TACTTACTTTTCTAGATTATATTTTGCTGTTTGAGCAAAGCATCCTTTGG
TGGAGAATCACCCATTGTTTTCAATCGAGATTTGATAAAACAACTTGACT
CGAACATATTTGATAAGTTTCGTACGAAAGGGATCCGATATTCCCGAAAc
ctaaaacatcaaaacaatacAAATTATATCACGTGGCAAAATACTTTCTT
CACGGATAACAAAAAGGTAAAGATAATCTTTTGCTCGTTGCATTTCTTTC
TCATTTCTGCTTATCAAATCTAGTGTATTCTTTATTAGCTTTTGCTTTGT
GTCAGAAGTAATTGTTCCCGACCCTTTCAGCATCacaaccaatgaagtat
aagcccgaagggctttTGCGATCATCAATCAtcaacctttctcaggcaag
aagaagtgaagtgaagccttaaaatatgcgccgtatttttgacgacagat
tgaatctagcaattcttttgttttcgagtaatacttttttcgaaatttag
gactaaattttagtttcaatctgctttttgtgtaaaaaccaggcggggcG
CGCTAgtccgcgcaactttggtagtatttgttggcttcaaatcctaccaa
tgAGATTCGATTCtatcccttcgggcttatacttcattggtcacAACCTA
CCACCATTGATGATATTTCCAAATGGGTTTAGGTTTTGGATGTGCTACTG
GGAGCTTCTGAACTCGCTTCTgaagaataaaattttttaaactatGATGA
ACTAATTaaaaaaaTGCTTAATAACATTTTGTCAATAGGAAGCTGAGAAC
AAAATGGAAAACCAGGGTTTCGAGTGGAAATGGAAATCAAATGGTGACGT
CACAATTTGGTACCAACTTCCAGCGTTTTTTACGCAGCCTCATTCTGGTG
AAGAAATTTGGTTTAATCAAGCAACAGCCAATCATTGCACTTATTATAAA
AGTCATCCTATGGTAAGCCTCttagtactttaatgggataaattttcacg
gggattaaatttcgtggatttCGCTGATTTGTGTTATTCACCACatattt
ttgaacaaaactcaaaaaatgtcgaataaatactttttgaatgtttactg
gcatcaaagaggCGCTAATAAaacgtatttcaacaaccaacatgcatgat
ttgacagtaaaaggcacaaaatcgtgaaaatattgtcaccTAGCAAAGTC
AAACGCAAAATTAAGTCACCgcaaaattacaaatttttgcGGATGAGCTC
AACAACCAAATTTAATCTCCGAAAAAactaatcccattaaagtatgttGC
AGTATTTGAAGACATATAAGtgtatttatttacattttcggAGAACATTA
TGCGAGAGGCGGAAGGCGTTTTTAGAGTTTTTCGTGTTCGGCATTTTGGG
CGTTATTTAGGTAGGCGTTTTTAGGGTTCCgcattttatcaattttgaag
CGTGGGCTTAAGATGGTAGATTTTTGCATTCCTCTTCACACGTCGTTCAA
AGCTTCTAGAGTCGCTTGCAACTTTACTAGCAACACGTCACAAAAGTTTT
TAGCGTTGAacgttttttagcttttttgtatgtattagatattgactagt
gttttgtataattttatgttttatgtatCAACATAGAATTTGacagattc
aaagattttctatCTGAACTTTAAGTACcctttcaaaaagaaagatttga
tacGACAGCTTCAAAACAGCAGTTTTACAAGCGGGTGTTGTGTTTTTCGG
TATGTACAATATCTATGTTCAAGGTCAAGTTTCAACAAGGGGTTTTTTAA
GTATAGATGGTTTTTCCGGAGTGTTATATGTTTATTCGCGTTTTAAGTTT
TCGTGTTTCATGTATATAAGTTTACAAAGTTTTCAGCTCTTCTTTTCGAT
CCCCCACGGTTTCTCTCTAGCAGTTCCATTTTCAGAGACAGTTGGAGCAC
CCAAATTGGCGAACGGGGCTAGTGCAGTTTTCATCCGAGGGGATCAAAAC
GGAGAAAATAGGTTACGAAAAGTATTTTATGGttaggattaggattaggg
ttaggattaggaataggattaggattagggttagtaataggattaggtgt
aggactagaattaggaCTAAAACTAGGATAattaatattaggatttttat
tttcattaggatgtatattttatatttttcgacTCTAGGCTTTGGTACGG
CTCCTACTACATGAAAGATATCAATCTGTCTCGAAATCGAGATTTCTAga
tgttcttttttgttttgtgtcTCAGGCCTATAATTTCGGAGAATtagtaa
ataaatgaatttattttcggttcgcagataagaaaataattatTCGAAAA
TGTGTATAATTTCATTTCCAAAATTACCAGAAAAATAATGCTGTCATTCT
TTTTACAGTTCGAAGGGAAAGAGGATTTACCACCGAGTGAATACCCGTAC
CACTGTTGCTATGGAGATGGTGAAGAAATCgaagatgacgtcatcgatcA
CATTCGATCAGTTATGTGGAGAAATGCAATGTCATTGGCTCTTTTCCCTG
GAGACGTTTTGATATTAGATAACTTGCTGTGTCAGCATTCGAGGATAGGA
TATGAAGGAGGTGAAAGGAAAGTTGTGGTATTTTTGGGAGAACCGATCAA
CAGATAG Coding sequence (CDS) from alignment at sc0000018_pilon:2107956..2112612+ >XLOC_005298 ID=XLOC_005298|Name=XLOC_005298|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2346bp|location=Sequence derived from alignment at sc0000018_pilon:2107956..2112612+ (Clytia hemisphaerica_ch_hm2_pilon)
atgttgaaattcAAATGGCTATTACGAGCAGATGGACCAAAATGTGCGAG
AatgttgaaattcAAATGGCTATTACGAGCAGATGGACCAAAATGTGCGA
GATTCTATTCAGCAAAAGTTGGGAGGATtctcaaaaattcaaaagtagCG
TCATCAATGCATATCAACGAATTAAAATCAATTGACCAATCACAACAACC
AATAATCGAATGTCGAGACAAAAAATACCTTGCAGGATCTACATcaaaga
attttccaaaaacacTTCCAATATACCTCCACAATGAGTTCAAAGCTATA
GAACTCTCCAATCAACACAATAACATTTTAGATATCGGTGCAAATTTACG
ACCAATCTTAGATGATATTTTTAACCACGAAAATAAATCTGCTGTTTTGA
TCAAAAACTTGCCAATCACAAAAACAGATCATTTTCATGACTTTATGAAA
GGCTGTGATTACCAACCTATGACGTATGAATCAGGATCGGCGTATCGGGC
ATCTGTCAATGACTTGGTCTATTCAGCCAGTGATGAGCCACCTGAATTCT
CAATCGAGCCTCACAATGAAATGTCCTATTTGTCGCAATTCCCTCAAAAG
TTCTATTCAGCAAAAGTTGGGAGGATtctcaaaaattcaaaagtagCGTC
ATCAATGCATATCAACGAATTAAAATCAATTGACCAATCACAACAACCAA
TAATCGAATGTCGAGACAAAAAATACCTTGCAGGATCTACATcaaagaat
tttccaaaaacacTTCCAATATACCTCCACAATGAGTTCAAAGCTATAGA
ACTCTCCAATCAACACAATAACATTTTAGATATCGGTGCAAATTTACGAC
CAATCTTAGATGATATTTTTAACCACGAAAATAAATCTGCTGTTTTGATC
AAAAACTTGCCAATCACAAAAACAGATCATTTTCATGACTTTATGAAAGG
CTGTGATTACCAACCTATGACGTATGAATCAGGATCGGCGTATCGGGCAT
CTGTCAATGACTTGGTCTATTCAGCCAGTGATGAGCCACCTGAATTCTCA
ATCGAGCCTCACAATGAAATGTCCTATTTGTCGCAATTCCCTCAAAAGAT
TATATTTTGCTGTTTGAGCAAAGCATCCTTTGGTGGAGAATCACCCATTG
TTTTCAATCGAGATTTGATAAAACAACTTGACTCGAACATATTTGATAAG
TTTCGTACGAAAGGGATCCGATATTCCCGAAAcctaaaacatcaaaacaa
tacAAATTATATCACGTGGCAAAATACTTTCTTCACGGATAACAAAAAGA
TTATATTTTGCTGTTTGAGCAAAGCATCCTTTGGTGGAGAATCACCCATT
GTTTTCAATCGAGATTTGATAAAACAACTTGACTCGAACATATTTGATAA
GTTTCGTACGAAAGGGATCCGATATTCCCGAAAcctaaaacatcaaaaca
atacAAATTATATCACGTGGCAAAATACTTTCTTCACGGATAACAAAAAG
GAAGCTGAGAACAAAATGGAAAACCAGGGTTTCGAGTGGAAATGGAAATC
AAATGGTGACGTCACAATTTGGTACCAACTTCCAGCGTTTTTTACGCAGC
CTCATTCTGGTGAAGAAATTTGGTTTAATCAAGCAACAGCCAATCATTGC
ACTTATTATAAAAGTCATCCTATGGAAGCTGAGAACAAAATGGAAAACCA
GGGTTTCGAGTGGAAATGGAAATCAAATGGTGACGTCACAATTTGGTACC
AACTTCCAGCGTTTTTTACGCAGCCTCATTCTGGTGAAGAAATTTGGTTT
AATCAAGCAACAGCCAATCATTGCACTTATTATAAAAGTCATCCTATGTT
CGAAGGGAAAGAGGATTTACCACCGAGTGAATACCCGTACCACTGTTGCT
ATGGAGATGGTGAAGAAATCgaagatgacgtcatcgatcACATTCGATCA
GTTATGTGGAGAAATGCAATGTCATTGGCTCTTTTCCCTGGAGACGTTTT
GATATTAGATAACTTGCTGTGTCAGCATTCGAGGATAGGATATGAAGGAG
GTGAAAGGAAAGTTGTGGTATTTTTGGGAGAACCGATCAACAGATAGTTC
GAAGGGAAAGAGGATTTACCACCGAGTGAATACCCGTACCACTGTTGCTA
TGGAGATGGTGAAGAAATCgaagatgacgtcatcgatcACATTCGATCAG
TTATGTGGAGAAATGCAATGTCATTGGCTCTTTTCCCTGGAGACGTTTTG
ATATTAGATAACTTGCTGTGTCAGCATTCGAGGATAGGATATGAAGGAGG
TGAAAGGAAAGTTGTGGTATTTTTGGGAGAACCGATCAACAGATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018_pilon | genome | sc0000018_pilon:2107956..2112612 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 925-1173:4409 |
| Aaloc | 751-924:2789 |
| Aaloc | 550-750:2016 |
| Aaloc | 52-549:802 |
| Aaloc | 1-51:1 |
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