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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000293_pilon:111828..119970- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_004580 ID=XLOC_004580|Name=XLOC_004580|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8143bp|location=Sequence derived from alignment at sc0000293_pilon:111828..119970- (Clytia hemisphaerica_ch_hm2_pilon)
AGTGGCGGTATTTCGATCAAACCTAGTAGTGGGATGGGTTTGATGCGGGG
AGACATGGGTGGAGCCGCTTGCGTTTTGGCTACGCTGCACATCATTGCAA
AATTGAAGCTACCTGTCAATTTATCAGTGCTGGTTCCCATGGCAGAAAAT
ATGCCGTCTGATCGAGCAGCCAAACCAGGAGATGTTTTTACTGCACTCAA
TGGAAAGACCGTCGAGGTTGGTTCTATTTTACTATCCGAGGACGCTGGTT
AGAAAGATATTCGTGTTATGAGCTTTTGTACCATATCTTGTACATATCCA
TTCTTTCAAAGATGTCAAATAAATGGGCCCCTTGTGTTTTTTGTTTGCTG
TTTTTTTTTACTCTCGCAGCAGAACCCCTTATAACATTGATAAATTTCTG
AAAACATTTTTATCTGTCAAAAAAATCCATTATTTTGCTCCAAAATCTGA
TAATGACTGTTCGGATAATAATCCCCCTCGCCTTGTAATCAGCATCTCCC
CATTCAGCAAATTTCAAACTCCCTTTGAACATTAATCGATCTCGCCCTGA
CAAACGACAAGTCGAAAATCTCCCACGAAACCGTAATTTTCCCTTATCAC
TAAGTGATCATGATATGATTGGAGTTGTTCGGAAACGTAACCATCAAAGA
TATGAACCCAAAACCATCAAATGCCGAAACTTTTCGCGGTACAATCCTGA
TGCTATGAACAACGAACTTCGCCAAGTCGATTGGAATCTTGTATATCAAC
AGTCCGAACCAAATGCTGCTTGGAAATACTTCAAACAAATCGTGACTAAC
TCCTTCAATCGCCATGCCCCTGAAATAACAAAACGCATCAAAGGTCGCCC
ATGTCCATGGCTAACCCAAGAAATCCGAGCACACCTGAACGATCGTGACA
AAGCTGATCGAAAAGCAAGGCGAACGAAAGACGAAGGTGATCGAAATATC
TATCGTCGTAAAAAGAACCGATGCACCAATCTCATCAAACAGGCGAAAAA
CAATTACCATAAAGAAATCCTCACCGAAAACCTCAAAAATAGTAAAAAGT
TCTGGGGTCACATCAAAAAACTTTTACCATCTTCAAACGTAAAATCAAAA
CCAACTGACGTTCTCAAAGACGGTGACGCAACCGCTACTAGCCCAAAAGA
CAAAGCCGATATGTTTTGTAATTATTACGCCAAAGTGGCACAGAATCTAA
AGAAAAAAGCAATGCCACTAATAGACTTTGTCTGGAGACAAGCTAGACCC
TTTCCCAACCGCACCGATAAGATTTTCAAGTTTTCAATGGTTGGAGAAGA
CCTGATATGTAAACTTCTTCAAGGACTCAAACGAAAGAAGGCTACCGGCA
TCGACCAACTTCCATCTAACCTGCTGAAAGATGCAGCTCCATCCATCTCC
AAACCACTCGCACATATAATCAATCTTTCGTTATCCACCTCAGCATTTCC
GACCGAGTGGAAGGAAGCCAAAGTGACACCCTTATTCAAATCCGGAAAAA
TATCGTCTGTCGAAAATTATCGTCCAATCTCGATACTACCAGTCATTTCG
AAAATAGCAGAGAAAATTGTCCAGATGCAGCTTACTGAATACCTGGAAGA
GAATAATCTACTCACTGATTTCCAATTCGGTTATAGAAAGCACTCCTCCA
CGGAAATGGCTGCTAACCTCTTCATCGACGATATTCGAAAGCAAGTAGAC
AAAGGAAATGTTGCTGGCGCCCTGTTCCTCGATTTATCCAAGGCGTTCGA
CACAATCAGCCACGGTTCGCTACTGAAAAACTACCGGCCTACGGGATCAG
GACGACTGAGCTGAACTGGTTTCAAGACTACCTTTTCAATCGCCAACAAT
TTGTTTCGTATGATAAAGCCATGTCCCAACCGCAACCGGTCACCTGTGGC
GTCCCCCAGGGAAGCATTCTTGGCCCACTTTTATTTCTTATATTTTTCAA
TGACTTTCCTGACTGTCTTGAGAATTGCAAAACGATCATGTTTGCAGACG
ACACAGTCATCTACACTGCGGCGAAAAGCTCCAAAGAAGTCAACGACATC
CTAAACGCCGAACTCAACAACGTCCAACGCTTCATGACCGAGAACGAACT
TATCGTTAACCTGAAAAAAGGAAAGACTGAGGGGATGTTGTTTTCCACCG
CTAAGAAATTGCACGATTCTCCCAAACTGAATTTACTCTACGGTGAAACA
CCCATTAACAACGCTACCAGCTACAAATATCTGGGAATTTTGATCGACCC
AGAGCTTCGACTATCCGAACATTTTGAAAAAACAATTAAGATATCAACTT
CACGTTTAAAGCTACTGACTTTAATTCGATCGAACGTAACTTCATTCGCA
GCCTACCAAATATTTCGTGCTATGGTACAAACTATCATCCTTTACGGGTC
ATCCACCAACCTAAACCTCAACAGATCTAGCATCGACCGCCTTGACAGTA
TCGATCGCAGGGCTAGAAGGATCATTAACAAACGGCAAATAGATCGCCAT
ATTATCGAGCCGACATCGAATGTCATGAAGCGTCAAGCATGTTGCCTTGT
GAAGAAATGTATGCTGGGTAAAGCAAGTGTGTTGCTGGCTAATCATTTCG
AACAAAATAACCACGGTGCCGACATCGAATGTCATGAAGCGTCAAGCATG
TTGCCTTGTGAAGAAATGTATGCTGGGTAAAGCAAGTGTGTTGCTGGCTA
ATCATTTCGAACAAAATAACCACGGTGTCAATACACGAAACCAAAATGCT
TTTATTCGTCTGCCCAAAATTCGTTTAGAAGTTGCCCGACGTGGATTCTT
CTTTATGGGAGGAAGGTTGTACAATACGCTACCAGTGGAATTGAGAACCG
TAAATGACTTTAATATTTTTAAAAACAAAATAAAGTCTCATACTTTCAAT
TTTATTTAAGTATAGTGCCTCTGCTTAGCCTTTAACTTGCCACTACACTA
TCTCTTTTCTGGATAATTTATTTTTGGATCTAGTGAGGCTTTGGTTTTCA
CTCTCGTTGCTACATTTAACTATATCCCTAATATTCTGTATCAATTTGTT
TACAACACCACAACACTACGCAATGATCTTTTACCAGAGATAGTAAAGAT
AGGCGTTTAGGATATTTTATCTAATATTTATTTCCGTCTTATTTTTTTTT
TTTTTTAAACATTTTGAATATGATAATTTCACTGTTTTTGGGTACTTTCT
CCTTTTCAGAGTTTACACATTGCGTCACACTTTTCAGTATTAATATTCTC
AGTATTACTGTATTAATAGACTTCACATGTATACTCTTAGTCTTGTTTAC
ATTAATTTTAAGATAACCTTTTGAAGTATCTATCGATCACAGCGTGGTTT
TTCTGCGGGTATAACCTTTCATATTTAGTTTAATATATTCTCTATTAGTT
CTATTTTATGTTTGCCTCAGTTATTTTTCATACTGTGTTATGCCTCGTGT
TTTTCCTTACTATCATTTACTCATGCCTTTCCAACATTGGAAAGTACGTA
CACCTCTCAATCAAAACGAGATCTAACATCGTAATTTCTACTTTCATAGC
GAATTTAACTCCTCATTCAAATAATTAATTTTCAAGTGCTTTTTCATAGC
CAAATTCAATACGTTCGTAAACTATGCCAGCATGCCTTTTATTTAACTTA
TAATTTATTTATTATTTTAGATTTATAACAGGACCAAAGGTAATATCAGA
TACTTGTAACTGTTTGCGTAATCCTGTATAAATATTCAATAAAAACTAAA
AAACTAAAACTTTCCGCTGTTTCTCAGGAACTTTGGAGTAATAATCAAAT
AAAAAATGGCAAAAAAAGAGTCCATAAAAATTGTGTCATTGTGTTTAGGT
CGATAACACAGATGCTGAAGGACGAATGATCCTGGCGGACGCTTTATGCT
ACGCGGACGAATTTCAACCGTCTACAATAATCGATGTCGCTACACTTACA
GGTAAGGGGAGGTAAAATTATTTGACCCTTGGGATCTTCGCAACCATCAC
TTAACCCAACTTAGATATTCTTGATAAGATTGGTCTCTAAAGCGTTTTCA
TTTTTGCTGTCCTTTTTGCTGTCCTTTTTTGCTTCATTTACAGTTTGTAC
AACTGAAAAACTTGATATTACTGCGTTGGATAAAACTGCCACCTTTCATC
TTCAGGTGCAATCGACGTGGCGTTAGGTGGGGCAGCCGCTGGAGCTTACA
CAACGTGTAACAACTTATGGCAGAACATGGAACAGGTAACATCCGATTCC
TGAAATTGATTTATATAAAAACTTCCTTTTTTTGTTTTTCGAAGCTTTTC
TTCGAAACAGGTTTGAGTAGGTTTTCATCAAAATACTTGGCTTTCTTTCC
AGGCCAGTTACACGACAGGCGATCGTTTTTGGAGAATGCCTTTGTACAAA
CATTACACCAAACAAATGAAATGTAGCTTGACTGCTGATCTACGAAACAC
GCAGAAAAAAGCACGGTACGATACCTGAGGGATTTTTTTCTCAGACTTCT
TCTTTGGGAAGCTGTTTTTTACTTAACCAAAAGTCAATAATTAAGAAGCT
TCGTGAATGAGATTTGTTCAAGTATTGATTGCTTAACAGTTCTTTAAGAC
ATAGCTTTCTTTATTTATACCACTCAATTTAATTGGACCTACCCCGGTGG
GGTGGAGGTCCTATAAATTCACCTCTGTCCGTTCGTCCGTCCGTCTGTTC
GTTACCAACTTTTCTCGAGATTGGCTCATTAGTTTTTTCTGATTTTTTGC
ACAAAGATGCATAACTATAAACCCTCGAATGTGACGGAGCCCGATTTTCG
GGGAAAAAATTTTTTGGGCAAATTTGGGCCAAAAAACAGCTAAAAAACGG
GTTTTTTGAACTTTGTAAAAAATTGGATCATTAATTTTTTCTGATTTTTT
GCATGAAAGTACCATCATAGGTAAAAGATGGCTTAAGCAGATTTTTGCCA
AAAAATTTTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAATCACTAT
TACTAAGCATACATCAATGTTCTTAGTCAAATTACTCAATTTTTTTATGA
CATAGATGTTTTTTTTGCTCGCGAGGGCTTACTTTTAAAGAATATGTGTG
TTTAGACATGAAATTTTGGTTGCTTGGCGTGTTTTTATAGAAAAACTGGC
CAAATTCGATATTTTTTTATAAGCACATTATCAATTACTTAGGTATTAGC
TTTTCTCGAGATTGGCTCTTTCATTCTTTATGATTTTTTGCACAAAGATG
CATAACTACAAACCCTCAAATGTGACAGAGCTCGATTTACGAAAAAAAAC
ATTTTTGGGCAAATTTGGGCCAAAAAACGGCCAAAAAACGGGTTTTTTGG
ACTTTGTGAAAAATTGGATCATTAATTTTTTCTGATTTTTTACATGAAAG
TAGGGTACCATCATAGGTAAAAGATGGCTCAAGCAGATTTTTGCAAAAAA
AATTAGTTGGCTCAATAAACGCATATTTATCTATAAAAATCACTATTAAT
AAGCATACATCAATGTTCTTAGTCAAATTACTGAATTTTTTTTGTGAGAT
AGATATTTTTTTTACTCGTGAGGGCTTACTTTTAAAGAATATGTGTGTTT
GGACATAAAATTTTGGTTGCTTGGCGTTTTTTTATAGAAAAACTGGCCAA
ATTCGATATTTTTTTATAAGCACATTATCAATTACTTAGGTATTAGCTCT
TTTCGAGATTGGCTCTTTCATTCTTTATGATTTTTTGCACAAAGATGCAT
AACTATAAACCCTCAAATGTGACGGAGCTCGATTTTTGGAAGAAAAAAAA
ATTGGGTAAGTTTCAGCTAAAAAACGGCTAAAAAAAGGTTTTTTGGATTT
GTGAAATATTGAATCATTGTTTTTTTCTGATTTTTTGCATGAAAGTAGGT
AAAAGATGGCTCAAGCAGATTTTTGTAAAAAAATAATTTTTCAGCTCAAA
AAACGCATCTTTATCTATAAGAATCAGTATTAATAAGCATACATCAATGT
TCTTAGCCAAATTACTGAATTTTTTGATGAGATATGTTTTTTTTGCTCAC
GAAGTCTTGAATATAAAAGAATATTTTAAGAGCATGAAATTTTGGTTTCT
AAATGTTTTTTTTATAAGAAATAAACGACTAATTTTAATATATCGTGACT
ATTTGTGTTCTGAATGATTGTTTAATGGTCACGCTCACGTAGTTTTCAGT
TATATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTG
TTATTTTATTTTTTCCATAGTTCCGCTGGGTCCGCAACTGCTGCCGCTTT
TTTAAAGGTAAGAGTAGTAATTCGAATCAAAAACTTCCATAAAATGGAAA
GTTTATATTTACACTGTTAAAGACTTCTTTAAGCGTACAAACTTTCGCGG
GCAGATTCTTTTGTGATTTTCGCGAATTTTAGCCCTTTTCGCGAAAGTAA
ATGTCTTTGAAAATTCTTGAAAGAGCCATTCGCATCCATTCAGTTTATGC
TCGCGAAAAAAATTCCTGACAAGATAAGAAAAAAATCAGTAATGCTTCTA
AATTAAAGTAAAATTAAGAATAATTCTATTTATACTGAGACGATTAATTA
GTCTGAGACGAGCAATTTAGAAATTGAGAATTATGGAGGAGTGTACTTTC
GATTCATATTTCAATAAATAGGATCTCCTCCACAGATCACATTTTACAAA
CTATTCGTCTCAGACGATTTTTCCGTCTCGGTATAAATAGAACTATTTAT
GGCACCTTTCTGCCCGTTAAAGCCTCACGAGTCAAAAAACAAAAGCTTCA
ATCCGATTCAAGAAGTATTTGTCCTTCTAAGCCATTTCTTCGTGTGAAAA
TTGTTTGCGATTTGTTTATGTTGTTCGTGAAAGTTTTTTAGGGAAAAAAT
GTTTTTCGATACTCCCCTGTAGATTCAAAGCTTCCTAATCATATTTGATC
CATATTTATTTGGATTGATAACGTGTCTAATTTTCCGTCCCTCAGGAATT
TGTGACGATAAAAAGTTGGGCCCACCTCGACATGTCGAACGTCAAAGCGA
ACTCGAGTGGCGAATTATCTTATCTCGGTCCAGGCTTTTCAGGTCAGTCT
AACCTCATGTTTTTCTCTCATATTTTTGTAGGAATTTGTAACGATTAAGA
GCTGGGCTCATCTAGATATTGCTGGCGTGATGGATAATTCCGGAGGGGAA
TTACCGTATCTCAACTCCGGAATGTCAGGTTTGTCTGCTTTCTTTTCCTG
TTTTTCAAAATGCATGGACACGTAAATTCTCTTTCCGCCTTCGTCAGCTC
TGAAAAGCTCAATTTTTGGACCTACCTCCGGGTACCCCGGTGGAGGTCCT
TTAAATTAACCCATGTTCGTCCGTCCGTCCGTCCGTTCGTCTGTTACCAG
CTTTTCTCGGGATTGGCTTATTACTTTTTTCTGTTTTTTTGGCACAATGA
TGCAAAATGATGATTCCTAAAAAGTGACGGGCAAATTTGGGCTACAAACT
GCCTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTACTTT
TTTCTTATTTTTTGTACAAAGATGGAGGGCAAAATTCTCTAAAGAATGAC
TGAAGTGGTTTTTCCCGGAAAATTCTTATTCGCCTTAAAAGACGGATTTT
CGTATTTTGGGGAAATTCCCTTTAACCAAATAAGGAAATATAGCTTTTCT
CAATGTTGACTCATAATGTTTTTCTGATTTTTTGCACAATGATGCAAAAT
GGCAATGCCCAAAATGTGACGGAGCCAGATTTTTAAGGAAAATTTTTTTG
GGCAAATTTGGGGAAAAAACTGCTTAAAAATAGGGTTTTTTGGGCCTGAA
TGGTTTAAGTGATTTTCGTATTTGGGGAAATTCCTTTTTACCATTTTACA
TTATTCAACACACAAGCTTTATTTTTCCATTCTGAATTTTTGTACAATTA
TTGTCACTTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAGGTCC
ATTCAGCATGTTGCTTGTTTGGTTTGATTTTTTGGAACTCTTTTGTTAGG
GGGAGGCATTTGAGATCTGATATTGATTTTCTTATTTTCTTAGGTCGTCC
GACAAGAACTTTGGTTGAAACCGTCCGAAATATTTTTACGTAG Coding sequence (CDS) from alignment at sc0000293_pilon:111828..119970- >XLOC_004580 ID=XLOC_004580|Name=XLOC_004580|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1392bp|location=Sequence derived from alignment at sc0000293_pilon:111828..119970- (Clytia hemisphaerica_ch_hm2_pilon)
AGTGGCGGTATTTCGATCAAACCTAGTAGTGGGATGGGTTTGATGCGGGG
AGACATGGGTGGAGCCGCTTGCGTTTTGGCTACGCTGCACATCATTGCAA
AATTGAAGCTACCTGTCAATTTATCAGTGCTGGTTCCCATGGCAGAAAAT
ATGCCGTCTGATCGAGCAGCCAAACCAGGAGATGTTTTTACTGCACTCAA
TGGAAAGACCGTCGAGAGTGGCGGTATTTCGATCAAACCTAGTAGTGGGA
TGGGTTTGATGCGGGGAGACATGGGTGGAGCCGCTTGCGTTTTGGCTACG
CTGCACATCATTGCAAAATTGAAGCTACCTGTCAATTTATCAGTGCTGGT
TCCCATGGCAGAAAATATGCCGTCTGATCGAGCAGCCAAACCAGGAGATG
TTTTTACTGCACTCAATGGAAAGACCGTCGAGGTCGATAACACAGATGCT
GAAGGACGAATGATCCTGGCGGACGCTTTATGCTACGCGGACGAATTTCA
ACCGTCTACAATAATCGATGTCGCTACACTTACAGGTCGATAACACAGAT
GCTGAAGGACGAATGATCCTGGCGGACGCTTTATGCTACGCGGACGAATT
TCAACCGTCTACAATAATCGATGTCGCTACACTTACAGGTGCAATCGACG
TGGCGTTAGGTGGGGCAGCCGCTGGAGCTTACACAACGTGTAACAACTTA
TGGCAGAACATGGAACAGGTGCAATCGACGTGGCGTTAGGTGGGGCAGCC
GCTGGAGCTTACACAACGTGTAACAACTTATGGCAGAACATGGAACAGGC
CAGTTACACGACAGGCGATCGTTTTTGGAGAATGCCTTTGTACAAACATT
ACACCAAACAAATGAAATGTAGCTTGACTGCTGATCTACGAAACACGCAG
AAAAAAGCACGGCCAGTTACACGACAGGCGATCGTTTTTGGAGAATGCCT
TTGTACAAACATTACACCAAACAAATGAAATGTAGCTTGACTGCTGATCT
ACGAAACACGCAGAAAAAAGCACGTTCCGCTGGGTCCGCAACTGCTGCCG
CTTTTTTAAAGTTCCGCTGGGTCCGCAACTGCTGCCGCTTTTTTAAAGGA
ATTTGTAACGATTAAGAGCTGGGCTCATCTAGATATTGCTGGCGTGATGG
ATAATTCCGGAGGGGAATTACCGTATCTCAACTCCGGAATGTCAGGAATT
TGTAACGATTAAGAGCTGGGCTCATCTAGATATTGCTGGCGTGATGGATA
ATTCCGGAGGGGAATTACCGTATCTCAACTCCGGAATGTCAGGTCGTCCG
ACAAGAACTTTGGTTGAAACCGTCCGAAATATTTTTACGTAGGTCGTCCG
ACAAGAACTTTGGTTGAAACCGTCCGAAATATTTTTACGTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000293_pilon | genome | sc0000293_pilon:111828..119970 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 649-696:49 |
| Aaloc | 550-645:1013 |
| Aaloc | 514-549:1873 |
| Aaloc | 400-510:3792 |
| Aaloc | 322-399:3987 |
| Aaloc | 217-318:4296 |
| Aaloc | 1-216:8144 |
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