|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000300_pilon:260279..266773+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_003889 ID=XLOC_003889|Name=XLOC_003889|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6495bp|location=Sequence derived from alignment at sc0000300_pilon:260279..266773+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGAAGCCAGAAAATTGGTTTGCTAGCAATGTTTGCTATACTGCTAGT
TTTGCTCACAGAAACTTTCGCTTATGAATGTGATACTGTAACCCGTTCGG
GTACCTCTGGCTCTTTGTCTGGCGGAAACAAATATGGGTGCAGTACAAAA
ACTTATGATATCAACCTTGGTACTACAATGGCTGTGAAATTGACTTGGTT
GACTTTTTATAATATCCCTGGAGATATGCCTTACTGTACTGATGGATATG
TTAAAGTTTATGCGGagtaagttttttgttttttcccagCTGgcccacaa
cgttgtttcaacgtttatctaacgttcatgacgtccatataacgttaaat
gaacgttgaaacaacgttgtgtgcctgctggGTCTTTTATACGAAATATC
ACCATTTAACGGCCACTACATTCATATAAAGTTTACAAACCTCTAAACCT
AGCCTGTACCACCCCGCCCTCGgacgttttttatattttgaaaaaaatgt
cgcAGACACGGAATGTTGCTTAACTGTAACAAACCGAACTTTGtgttatc
ttttcagtcagtgaagaagagtttggtactgGCTACTACATCCCCTCCCC
CAGAATTCGAGGGGATGTGCCCACTAAGCAGATGTATACTACtttttttG
TTAACTCCCTAGCGATATTATATAATTGGTCTTCGCGGGAGGTTTTTGTT
GttaacagtagcgtagacaaggagCGCAAAGTTTGTTTAGAAGAGCATTA
CTGCTCTCCCACACAGCTTTGGCACCCTCTTGTCTCCTGTTCTGagtggg
acgagatggagtttttacaagttcttatttgatttggttggttgttaacc
agtaataaaacaattttgttactttttctaaagagcgCATCatttctatt
acttcaaatgaccaattattaaagtatcttataaaactTCATCCCATCTG
TACTTAGAATTGTTTGTTTGTGGCACCTACAGAGTTAGTTCAcataatgt
ttccagctcacccaaatagagactcttacgcatgcgtaatttatcgttct
tttcAACCAAATGTAGTTAATTctcgtgataaacaaagaggaatgaatct
gtAGGGGTTGTATAGTCTCCTATAATCTCTTTGAGTCGGGTTTGTGGATG
GCGagatatgtcgttctttgatggttagggttagggttagggctagggtt
tGCCGTTGCCGTtctttttgtcgattttttaataattatttgttgctctt
tttagatggtctggaaacgttagatgaatacAGTCTCTATaaaaaaaaCT
actttgtcattttgtctttttaGTTGTGGTACGTGGAAAATACCCAGAAC
AGAGATCGCAGAGTTTTGTTCCGGAAATATGATCTCATCCCTCCCTCACG
ACATTTATGCGTATACAAATTGTTTGAGATTGGTGGTCAAAAACCCAAAC
ACTTATTCTTCAAAAGGCACTTTTTCTGTTACTTGGGGTCGATATTCGTA
TGGATTGCCATCCTGCTCGTATTCATCGGTGTAAGTGAacacatattttt
ataagaacaaagataAGGTTTTGATCATTGAGttataagcccgaaggact
agaggCGAATCTTttacccttctcaggcaagagaaattaaagctacttat
ttcccatccaaaacgcgcttagaacgcgccgcaatcgtcacgacggattg
tatctagcggctcctttttttaattttgttgaaaactaGCGATCGATTTT
AGTTTtaatccagcgtttgtgtaaaaactacgcgcgggtgTTCTGGGTGG
TTTAATTTCTCATCCAGGAGTCTCTAGACCTTCGGGTTTGAATTGCCAAG
TTATAAAGAACAACTTACCTAGCTTTAAACCTGGAACCTGTACAATGTGt
ctggaaaaaaatattacatcaGAACAACAGAAACAAAAGTAGAAATCTTT
ggttttccttcttttttatcATAATACAAAGCACCCAACGacatgttttg
atcttcttcttttcttaaGACACTCAgtgtaaaaaaaaaccttttatacc
ttatcggggaaaatgtcgtcagggaaaagtgacgaaattttggccaaatg
acgaaaattttccccggccttaatgcgtttaccaactgcCAGCaaatgac
gaatatttttccccgacgaaaattttccccggcgaagttttccccgataa
ggtattttgttgttgattttataGAACAAAAACCTCATCAAGTGGAGTCA
TGGCAACACCAAGCTGGCCCAATCCATCATATAGATCATCCTGCTCGTGG
AAACTTGATCGTTCAAAATCTAACGGATATCTTATTCACGTTATGGACAT
TAAAGACCAAACTTATTCATCTTATTGTTCCTCTAGCGAACAACAAATAA
CGATCAAAGGTAAGTTTCCAATACAAAACTTTGTTAAGTGTGTTTGTGAC
ATCGAGGCAAATTAAAGATCAAACTTGTTCTTCTTATTGTTCCTCTAATG
AGCAACAAATAACGATCAAAGGTAAGTTTATCATACAAAACTCTGTTAAG
TGTGTTTGGGACATCGAGGCAAATTAAAGATCAAACTTGTTTTTCTTATT
GTTCCTCCAGCGAGCAACAAATAACGATCAAAGGTAAGTTTATCATACAA
AACTCTGTTAAGTGTGTTTCAATcttaaattttttcagaaatcataTAAA
ATTAAAACACCAAAAGATGGAATACATTCTAAAAccccatcaaaatttat
gaaactataataaaaacatgaaaatacctcCTAAGTTAGAAAAATTTTGC
TGCCAACTCgagcaaagccaaaaaatggagtctgctaaattacaCCGGTT
CATatatcagcgccatccagtctatcaaaatgCTGTATAAGTGGCTCCCG
TGCTAGGATATACCTGATTGGGTTTGATATAATGGGGTTAACTGCAGTTG
GGGCGTCCCGAAGGTAGGTACTATGCACCCTGGATTACTCCACTTGCCTT
TGACCATTCTATTTCATTTATGTCGTGGAGGCATCAAGTACATTGGTATG
ATCGGGCTAGGAATTGAACCCACGAATTTGTGCACTCTACACTTTACACT
TAGCTTCGCTTGACCAataacaattcatgatatgcaccattgcaatgtct
tctgaaatTACATCACGGatccaatagctgattggttgtaagtgacgtac
aATTAGTCATTACGTCACtttgaaccaatcagcttttaaatgcgtggaag
acattgcaatgatgcatatcatgaatagtcaGCATAAAATCGACTACAAA
AAGTCAATGCGattctttgttttgatactaATGTAGTGacttcttttcaa
ctttttcctgCGTGTTTGAATTATGAACACTCCACTGTACtatcaataaa
attttgatatggaaaattaaaatgttatattctGTGAAGGTAGAACACCC
GCCCCATGGTGCGTAAGGTGGTCCAGCCCGAGTCAAACCAAAGCTCCTCT
AATCGTACTTGATGCTTTTGCTTGGTGCTCAGTTACTTAAGTAAACTTTC
CAGGGAAAGTAATGGCTTCTCCCTCTAACTTTGGAAAGACTTCTTGCTAT
TTAGTAATCATTCTTCATCGAAGAGGTCTCcctacgggaatttttttata
aaacagaCAATGTGCACATGGTGTACAGTACAACGAAACGATGAACCTCG
ACTGCGGTCACACCTTTGATAACTTAACATTCATCTTCTGGTCAGGCCTT
AGAACATCTCCTAATCACTCATTtttgctttcaccgcgtttactctgcca
agccaaacgcggtgactcaaatctcctttataagatattttacttttttt
cagacGAGGGAGACTTTGAATACAGTGGAAAAGACATTTGTACTCGTGAT
AACCCTATCCAATATTACCAGCCTACCGTCAAGATCAGTTACAGCCAAGG
GACTGATTGGAATAAGCGAGGCGTTGTTGTCGGATGGGTCGCTTTCAAAG
ACCCTTATTACAGTAAGTTAAACTATACGTTTGTTGTTTTacaagaataa
actatataagaacataaggcttctatggccaaaatgttaagaatacgcta
agagcattttaaggcttcgcggactctaaaacacccgatttcttaaaaat
tgggcaaaattactcaaaaaatggccagAATAAAAACctgttaagaatat
tcatatccttaaaactcaaaaagttaagaacatccgaaggcttcaaaaaa
tttggaagttcttataaaaaaacgtgtatatttcgATTCGGAGAAAATTT
GGGTATGtttttttATGTGATAAATTGTTATTGACTTTCGTAGAGAATAT
ATGCTGGGAGGGGCCTGGGGTTGTCTGGTAGGTTGGAGAGTAAGTAAGAC
TGCGACCGCaatcggaggcgacccgaaggctcctcttttgatagctatct
acccgaaggtaagggagggcgccactctttctccctggattgctccactt
acccttgatccttcgcTTAACTGCTGAgcattaagcagagaggcatcaaa
taccattttggggatctttggtatgacccggctgggggttgaacccacaa
ccttgcgcaccgtagccggatgctctaccactgcactacggtcgcttggA
AAGTGGTTGACGGCGGCAGTACCGCAAACCAGAGGTTTCTGGTTCGAATT
TCCGTTGCGCCGTGTGACCCTGgataattcgaatctctttaTAATGCGAA
CTAAATCATTGGTCCTCTGAGATTTAAAATCGTCATAATACTCACtcata
atttgaatctttctctaattcaaagGAAATCAgatccaatagaccttttc
ataaattacgtcacgaacatcacttgcctcgtatccaaacaattaccatg
gtcattatgtctcttgagacatttaatgattttttttatgaataggaagt
agttttgataaaatccgctgggagttaatcagcatggcaataatttcaaa
acgaggcaagtgatgttcgtaacggaATTTATGTAGGTCTATTAGAGAAA
TcatttataaaatttcaaaattttcagctGATGTTGGAGCAATTGGAGGA
TACATTGCTGCAGGGATTTTGGTTCCCATATTCATACTTTGTATCATCGT
GTGCGCATGCTTGAAACAAAAACGAGGCTACGTGTTCAGCCAAAGAGCCG
CCGGATTTAACAACATGACGCCGCAAGGGAATAACGTGACAGTCGTCAAT
AACCAAACTGCAACgggtaaaattttattatctagcacctcaccaaaaaa
ctgggattttttatttggtttcttggtgatttctattttgatgatttttc
gaaaaatagatgttttttcAAGTGCTCTAActatggcgttctaaatcttt
ttcaaaatgacttCAAGATTTAAAACGCCATGGTTCTGACGctaattcga
ttttttcactactgcaggagcttcaaaAGTTAGAAATGACGttaaaaatc
gaatgtttggagcccaaaAATCTgagctcaaaacattcgaaaaagtcgca
aagtggaatagacgatACTGCGTAGAAAAAGCCGTGACGTCCAGGGGGCT
TTTTAGAATTTAGCGgcgaaaatacaagaaaacgTCACTTTTTGTTGCTT
TCTAAAACCCTTTTATCTCTCTGTGTTTTCAGTAATTCCTTTCTCCATCA
GGTTACCGCAAACTTACcttaaattttcttcttcaaactcaaaatacaaa
aaatgccaaaatacATTTGCAGGAATGCTAGCCAGCATTTCTCTGGACAA
AtacaatatttttctaaatgttcagagtgtttttttattcaatttggAAG
TCCTTGCCACCTCCAGATCgagccaatgaaaaaaattggaatcaAAATTT
CGGAATTACAAAATTTGAACATTAATCTGGAAAACACAGTGTTTTAAGAA
ATTCAATTAAACGGAATTAACTGAACCCTAAGACATTTCCATGAAACAAT
GTAAAACTTTTTCGACTAGATCTAGGCTCTTAGAATTTCTAAGCAAGTCT
CAAGATTTGATCATTTAGATCTTGTTagtaataaaaattactttgcgCGG
CTGAAACAGGCTGAAATAGCTTAATGTTAACACTTCTTTTTGTCAGTTAG
CTCCCTTTTCTTTTGTGACAAAGTTCAGGATCATTAACCAGCAAAATGAC
AAACTGTTTTCTCACTATTTCAGCTCAACAACAATATGTTCCACCGCCCC
AACAAGGATATCCAGCACAACAACCAGCTTACCCACCACCCCAACAGGGC
GCTTACCCGCCGCCCCAACAAGGTGCTTATCCAAACCAAGGTTACGCCCC
ACAAACACAACCTGGAGCTTATCCTCAACCAGGGGCATATCCGCCGCCCC
AGCAAGGATATCCACCCGTCTCTCAACACGGATACGCTCCACCGCCCGTT
TATCAAGAATCTGCACCGCCCCAACCACAACCACCAGTCCAATAA Coding sequence (CDS) from alignment at sc0000300_pilon:260279..266773+ >XLOC_003889 ID=XLOC_003889|Name=XLOC_003889|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2556bp|location=Sequence derived from alignment at sc0000300_pilon:260279..266773+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGAAGCCAGAAAATTGGTTTGCTAGCAATGTTTGCTATACTGCTAGT
TTTGCTCACAGAAACTTTCGCTTATGAATGTGATACTGTAACCCGTTCGG
GTACCTCTGGCTCTTTGTCTGGCGGAAACAAATATGGGTGCAGTACAAAA
ACTTATGATATCAACCTTGGTACTACAATGGCTGTGAAATTGACTTGGTT
GACTTTTTATAATATCCCTGGAGATATGCCTTACTGTACTGATGGATATG
TTAAAGTTTATGCGGaATGGGAAGCCAGAAAATTGGTTTGCTAGCAATGT
TTGCTATACTGCTAGTTTTGCTCACAGAAACTTTCGCTTATGAATGTGAT
ACTGTAACCCGTTCGGGTACCTCTGGCTCTTTGTCTGGCGGAAACAAATA
TGGGTGCAGTACAAAAACTTATGATATCAACCTTGGTACTACAATGGCTG
TGAAATTGACTTGGTTGACTTTTTATAATATCCCTGGAGATATGCCTTAC
TGTACTGATGGATATGTTAAAGTTTATGCGGaTTGTGGTACGTGGAAAAT
ACCCAGAACAGAGATCGCAGAGTTTTGTTCCGGAAATATGATCTCATCCC
TCCCTCACGACATTTATGCGTATACAAATTGTTTGAGATTGGTGGTCAAA
AACCCAAACACTTATTCTTCAAAAGGCACTTTTTCTGTTACTTGGGGTCG
ATATTCGTATGGATTGCCATCCTGCTCGTATTCATCGGTTTGTGGTACGT
GGAAAATACCCAGAACAGAGATCGCAGAGTTTTGTTCCGGAAATATGATC
TCATCCCTCCCTCACGACATTTATGCGTATACAAATTGTTTGAGATTGGT
GGTCAAAAACCCAAACACTTATTCTTCAAAAGGCACTTTTTCTGTTACTT
GGGGTCGATATTCGTATGGATTGCCATCCTGCTCGTATTCATCGGTAACA
AAAACCTCATCAAGTGGAGTCATGGCAACACCAAGCTGGCCCAATCCATC
ATATAGATCATCCTGCTCGTGGAAACTTGATCGTTCAAAATCTAACGGAT
ATCTTATTCACGTTATGGACATTAAAGACCAAACTTATTCATCTTATTGT
TCCTCTAGCGAACAACAAATAACGATCAAAGAACAAAAACCTCATCAAGT
GGAGTCATGGCAACACCAAGCTGGCCCAATCCATCATATAGATCATCCTG
CTCGTGGAAACTTGATCGTTCAAAATCTAACGGATATCTTATTCACGTTA
TGGACATTAAAGACCAAACTTATTCATCTTATTGTTCCTCTAGCGAACAA
CAAATAACGATCAAAGacGAGGGAGACTTTGAATACAGTGGAAAAGACAT
TTGTACTCGTGATAACCCTATCCAATATTACCAGCCTACCGTCAAGATCA
GTTACAGCCAAGGGACTGATTGGAATAAGCGAGGCGTTGTTGTCGGATGG
GTCGCTTTCAAAGACCCTTATTACAacGAGGGAGACTTTGAATACAGTGG
AAAAGACATTTGTACTCGTGATAACCCTATCCAATATTACCAGCCTACCG
TCAAGATCAGTTACAGCCAAGGGACTGATTGGAATAAGCGAGGCGTTGTT
GTCGGATGGGTCGCTTTCAAAGACCCTTATTACActGATGTTGGAGCAAT
TGGAGGATACATTGCTGCAGGGATTTTGGTTCCCATATTCATACTTTGTA
TCATCGTGTGCGCATGCTTGAAACAAAAACGAGGCTACGTGTTCAGCCAA
AGAGCCGCCGGATTTAACAACATGACGCCGCAAGGGAATAACGTGACAGT
CGTCAATAACCAAACTGCAACggctGATGTTGGAGCAATTGGAGGATACA
TTGCTGCAGGGATTTTGGTTCCCATATTCATACTTTGTATCATCGTGTGC
GCATGCTTGAAACAAAAACGAGGCTACGTGTTCAGCCAAAGAGCCGCCGG
ATTTAACAACATGACGCCGCAAGGGAATAACGTGACAGTCGTCAATAACC
AAACTGCAACggCTCAACAACAATATGTTCCACCGCCCCAACAAGGATAT
CCAGCACAACAACCAGCTTACCCACCACCCCAACAGGGCGCTTACCCGCC
GCCCCAACAAGGTGCTTATCCAAACCAAGGTTACGCCCCACAAACACAAC
CTGGAGCTTATCCTCAACCAGGGGCATATCCGCCGCCCCAGCAAGGATAT
CCACCCGTCTCTCAACACGGATACGCTCCACCGCCCGTTTATCAAGAATC
TGCACCGCCCCAACCACAACCACCAGTCCAATAACTCAACAACAATATGT
TCCACCGCCCCAACAAGGATATCCAGCACAACAACCAGCTTACCCACCAC
CCCAACAGGGCGCTTACCCGCCGCCCCAACAAGGTGCTTATCCAAACCAA
GGTTACGCCCCACAAACACAACCTGGAGCTTATCCTCAACCAGGGGCATA
TCCGCCGCCCCAGCAAGGATATCCACCCGTCTCTCAACACGGATACGCTC
CACCGCCCGTTTATCAAGAATCTGCACCGCCCCAACCACAACCACCAGTC
CAATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000300_pilon | genome | sc0000300_pilon:260279..266773 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1006-1275:6226 |
| Aaloc | 958-1002:5221 |
| Aaloc | 820-957:5080 |
| Aaloc | 661-816:3856 |
| Aaloc | 475-657:2226 |
| Aaloc | 268-471:1325 |
| Aaloc | 1-264:1 |
|
