XLOC_003867 (mRNA) -

Overview


Name	XLOC_003867
Unique Name	XLOC_003867
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000300_pilon:178769..182519-
coding sequence from alignment at sc0000300_pilon:178769..182519-

mRNA from alignment at sc0000300_pilon:178769..182519-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_003867 ID=XLOC_003867|Name=XLOC_003867|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3751bp|location=Sequence derived from alignment at sc0000300_pilon:178769..182519- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGTTCAGAGGACTGTCGAAAAAGAAAAAAACACCGTCTACAACTGC
ATCCAATGAAAAACCGTCAAAAATTCCATTACCCAATCAAAAGACTCGAA
CAAAGGAAGAGTCATCCAATGATAAAACAGAAACAAGAAGACCTGTCAAT
CAAAAGTCACGTGGTCAGCAACAGCAGCAACCGACATCAAATGAAAAATC
AAAATCCAATAAGTCTGATAGATCACAAAAGCATGATTCAAAAACCGAAA
AACATGGCTCAAAACCAGGATCGAGTGATGTAAAGTCGCGTTCAAAATAC
GCCCGCGCGTTCAAAATCGAAACCAAGAAGCGGACGTGCAACAACGAAGA
GAAAATCCATGTTGAAAAACAGGCTATCAAATCAAAACCGGTTGTTGAAG
AGAAAGAGGAATTTGTTGTGGATGAAAGTCCATTCCATTTGAGTCATCTC
CCACGTTTTGATCGTTCGCGCGCGGAACGCGCGTCTATAACATCAATCGA
GCGCGTCTCAAATAGTCCTTTACGTACCAACAAAGTATATGCAAAAGCAC
CAAGCCCTAGTCTATCTAACAAGGAATCGAGCACGCCAAAATCGACTGAT
GACTTCCTAGATAGTCCGTTTTCTTCTAAGCCGAGTGATCCGTTCAAAGA
TGTGCGAAGAGGGAGTAAAAACAAGAGATCGGCAGCTAGTCTAGGATTTG
TTGAGGAGGGATCGCGTGAGGATTTACTGAACGACGAAGAGAGTTCATGT
CCAACATCGATTGAAAACGATCAACTCGATCTTTTAAACGAAACGATTGA
TGAACCAAGTTTTGATGATGGTTATCATACATTGCGGACCGAGAGGAGCG
ATCCTTGGTCAAAGTTAAGTAAAGAGGATCCATGGTCAAGCTTCGAAACG
GAAACATTAAATGCTAATAATAACGCAATAACAAAATTGAAATCCACTCC
GAATCTAACAATCGATGAAGACATCGAGAAATCCGATTTCGATGATGAAT
CGATTGACTTCATCGATAAAAAACGAATCTCAGCGATTAAACGTCGATCA
AAAAATGCACGATATAGTGTTTATCAGCCCATGGATACGAAAAATTCAAT
CGATACTTTTGATTCATTTTCCTTGGGGAATAAATTTGCTTCGGAAACTA
CATTGACAAAGGTAGGTATAATATCTTTAAAAACAATTTAGAAAATCGTT
GAATTATATTTAAAGTACAGGGTGTCCCTAATAAAAGTATCGAGTTTAAA
CATGCGATTGAGTAGAAAAGTTTGTGTGTGTTATCGCTAAAATATAAGAA
CGTTCTCCATCACATAGGCTCATTACAAAAGGTAGTTACAACGTATAAAT
TAATCAATAGCCCTTTTTACTATTCCCCTGTTGCATAAATGTACGTCTTT
AAAAATCAAAATTAATAAAAATTCAAATTCTTTCGGGGTAGTAAAAATTA
ATTGTTGCGTTTTTCTCATGATCGTAATTTCGTTGCATTTGTAAACAGGC
AGAGTATGTCTTTATTGTTACGTAATGACAAAGAAAAAAGAGGGAGAGCT
TAAAATACAATTTTGTGAATACACACTTAAAACTTTCTACTCAATCGCAT
GTTCAAACTCGATACTTTTATTAGGGACACCCTGTACAGCACCGTATGTC
TGACTGCCAGGTAGAAAGAACTTCCCAATCTTTGCCTGGATTAAATCCAG
AATTTTGTAGTAGGGGCGGCAAAAAGTAGAGTCGGGTGGAAAGAAAGTTA
TTTTAGAAGTCAAGTCTAAATAAAGGCAACCAGTTGAAGCACCAAAATAG
ACACACGATGTGCGTCTGACCAAATGATATTAAACAGAAATCTTTTGACG
AGAACTAATTTTGACTTTTGATTAATTTTTTTGGGCAAAAATTGTGAAAA
CATTAAAATTTGGAGAGAACTAACTGTTACGAGTAAGGATTTTCTTTAAG
TTTTGAATGCTAATTTGGTTCAGTTAATGAAAAATGGAGAATAGAAAGGC
TTTGGATCCGAAGTGATGAGTATTTTTATTAGAAAGATTCATCGAGTCTG
CCGTTTTACATCAATTTCGATTTTCACCAACTCATTTTACTTTATTTTAC
TAATTCTTAGATACAGCCAGTTTCGGCACGGAACTCAGGAACTATAGATC
GTAGACGGCGTAGCAAAGACATTAACCGATCAATGACGTTGTATTGGGAC
GGCGCAATAGACACTCCAACAAACCCGGAAAATCTCGTCTTCAACGTTAG
TATGAACGCTAAAATTCAAACAAGTAGTTTCCAAGACACTATCCTACATT
CTGCTGCAATCAACGGGAATGTCGATATCGCTCGATTTTACGTTGAATCC
GATCAATATCTGAACGCCCAAAACGGGTTTAGGAATACGCCCCTTCATTG
TGCCATTCTAGGGCGTAAAATGGATATTATAGATATTTTATTGACTAAAA
ATTTGGATCTATCTATGCAAAACATTGATGGAGACACGGCGCTTCATTTA
GCTGTACGATCAAACATGGTAGATTTGGTTGCTAAGTTGGTTGCTAAGGA
CGTCAAAAATATTAATTTGCAGAACAAAGATGGCGACACTGTTTTGCATA
TTTCAATTTGGCAGATGAATGAAAAAATAGTAGAGCTATTGATTTGTGAT
GAGCTTAATATTGATATTCAAAATAACTCAATGGATACTCCCTTGCATTT
ATCCGATAAACTAAACAGCCAATTAAAATCAAGAATTCTTGAACAAGCTT
TTAAAGGAACAATCGGAAAACACGATCACGATCACGTGATATCTTCCGAC
CAATCAAAAGACAGTTTAGGAGAGGGGAGCCAATCAGCAAGAAGCATGGA
TAGTGATAAATGTATTGGAAATATCACAAACAACAAGGCTGAAACACTCT
TACATATTTTTGCCGCACAAAACGAGAAAGACCTTCTTGAAAAAATCTTA
TCTCTAAGATGTACCAAAACAAAACTCAGGAACAATAACTCAGAAACAGC
ACTTCATGTAGCAGTTAAAAACTCAAATATCGAGTTGATAGAGTCACTCA
TCAGAGAAGATTTAGAACTTCTCAATATGGCAGATAGCAATGGGGACACC
ATCTTACATTACGCAATCAAAGCTAAAAACGTCGAATTAACTGAAAAGTT
GATCAAACTAGGAATTGACTTGAATCGCTGTAATAAGCTTGCCCAATCTC
CACTGCATTTGTCGGTCAGCGTTGAAAACACCGCCATATTGAGACTTCTT
TTAAAAAAGAATGCTAACCTATGGGTTCAAGATAACAATGGTTGTTATCC
AGTGCATTACATTGCTAAAACACGGAACATCGAAATTCTCCAATCATTTG
CCGAGTTATTTTCAATTCAACCAATCACCAGCCAGCATCAACGAAATGAC
GTCATTTCGCTCCAAAGTGACGTCATTAATATAATGGATATGCTTGATAA
AGAAGGGAACAGTCCTCTCCATACATCTGTTATCGAAAATAACGTTCCGT
TTTTTAAACTTTTTGTCCGAAATGACTGCACTCATCTGACGTCACAAAAC
AAAAATGGTGACACTGTTTTACACTTTTTGGCTCAATATAATCGGAACAG
ATTTCTTGATTTCCTTGACTTGAGTCATGTCAATACAAATGTATTAAATA
ATAAAGGACAAACACCTTGGAATATTGCTTTAAGCCGTGAATATAGCGAT
GTAGCGATGTTTCTGTTACAAAACAAATGGAACTTATCAATGGATATTTG
A

Coding sequence (CDS) from alignment at sc0000300_pilon:178769..182519-

>XLOC_003867 ID=XLOC_003867|Name=XLOC_003867|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5604bp|location=Sequence derived from alignment at sc0000300_pilon:178769..182519- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGTTCAGAGGACTGTCGAAAAAGAAAAAAACACCGTCTACAACTGC
ATCCAATGAAAAACCGTCAAAAATTCCATTACCCAATCAAAAGACTCGAA
CAAAGGAAGAGTCATCCAATGATAAAACAGAAACAAGAAGACCTGTCAAT
CAAAAGTCACGTGGTCAGCAACAGCAGCAACCGACATCAAATGAAAAATC
AAAATCCAATAAGTCTGATAGATCACAAAAGCATGATTCAAAAACCGAAA
AACATGGCTCAAAACCAGGATCGAGTGATGTAAAGTCGCGTTCAAAATAC
GCCCGCGCGTTCAAAATCGAAACCAAGAAGCGGACGTGCAACAACGAAGA
GAAAATCCATGTTGAAAAACAGGCTATCAAATCAAAACCGGTTGTTGAAG
AGAAAGAGGAATTTGTTGTGGATGAAAGTCCATTCCATTTGAGTCATCTC
CCACGTTTTGATCGTTCGCGCGCGGAACGCGCGTCTATAACATCAATCGA
GCGCGTCTCAAATAGTCCTTTACGTACCAACAAAGTATATGCAAAAGCAC
CAAGCCCTAGTCTATCTAACAAGGAATCGAGCACGCCAAAATCGACTGAT
GACTTCCTAGATAGTCCGTTTTCTTCTAAGCCGAGTGATCCGTTCAAAGA
TGTGCGAAGAGGGAGTAAAAACAAGAGATCGGCAGCTAGTCTAGGATTTG
TTGAGGAGGGATCGCGTGAGGATTTACTGAACGACGAAGAGAGTTCATGT
CCAACATCGATTGAAAACGATCAACTCGATCTTTTAAACGAAACGATTGA
TGAACCAAGTTTTGATGATGGTTATCATACATTGCGGACCGAGAGGAGCG
ATCCTTGGTCAAAGTTAAGTAAAGAGGATCCATGGTCAAGCTTCGAAACG
GAAACATTAAATGCTAATAATAACGCAATAACAAAATTGAAATCCACTCC
GAATCTAACAATCGATGAAGACATCGAGAAATCCGATTTCGATGATGAAT
CGATTGACTTCATCGATAAAAAACGAATCTCAGCGATTAAACGTCGATCA
AAAAATGCACGATATAGTGTTTATCAGCCCATGGATACGAAAAATTCAAT
CGATACTTTTGATTCATTTTCCTTGGGGAATAAATTTGCTTCGGAAACTA
CATTGACAAAGATGAAGTTCAGAGGACTGTCGAAAAAGAAAAAAACACCG
TCTACAACTGCATCCAATGAAAAACCGTCAAAAATTCCATTACCCAATCA
AAAGACTCGAACAAAGGAAGAGTCATCCAATGATAAAACAGAAACAAGAA
GACCTGTCAATCAAAAGTCACGTGGTCAGCAACAGCAGCAACCGACATCA
AATGAAAAATCAAAATCCAATAAGTCTGATAGATCACAAAAGCATGATTC
AAAAACCGAAAAACATGGCTCAAAACCAGGATCGAGTGATGTAAAGTCGC
GTTCAAAATACGCCCGCGCGTTCAAAATCGAAACCAAGAAGCGGACGTGC
AACAACGAAGAGAAAATCCATGTTGAAAAACAGGCTATCAAATCAAAACC
GGTTGTTGAAGAGAAAGAGGAATTTGTTGTGGATGAAAGTCCATTCCATT
TGAGTCATCTCCCACGTTTTGATCGTTCGCGCGCGGAACGCGCGTCTATA
ACATCAATCGAGCGCGTCTCAAATAGTCCTTTACGTACCAACAAAGTATA
TGCAAAAGCACCAAGCCCTAGTCTATCTAACAAGGAATCGAGCACGCCAA
AATCGACTGATGACTTCCTAGATAGTCCGTTTTCTTCTAAGCCGAGTGAT
CCGTTCAAAGATGTGCGAAGAGGGAGTAAAAACAAGAGATCGGCAGCTAG
TCTAGGATTTGTTGAGGAGGGATCGCGTGAGGATTTACTGAACGACGAAG
AGAGTTCATGTCCAACATCGATTGAAAACGATCAACTCGATCTTTTAAAC
GAAACGATTGATGAACCAAGTTTTGATGATGGTTATCATACATTGCGGAC
CGAGAGGAGCGATCCTTGGTCAAAGTTAAGTAAAGAGGATCCATGGTCAA
GCTTCGAAACGGAAACATTAAATGCTAATAATAACGCAATAACAAAATTG
AAATCCACTCCGAATCTAACAATCGATGAAGACATCGAGAAATCCGATTT
CGATGATGAATCGATTGACTTCATCGATAAAAAACGAATCTCAGCGATTA
AACGTCGATCAAAAAATGCACGATATAGTGTTTATCAGCCCATGGATACG
AAAAATTCAATCGATACTTTTGATTCATTTTCCTTGGGGAATAAATTTGC
TTCGGAAACTACATTGACAAAGATACAGCCAGTTTCGGCACGGAACTCAG
GAACTATAGATCGTAGACGGCGTAGCAAAGACATTAACCGATCAATGACG
TTGTATTGGGACGGCGCAATAGACACTCCAACAAACCCGGAAAATCTCGT
CTTCAACGTTAGTATGAACGCTAAAATTCAAACAAGTAGTTTCCAAGACA
CTATCCTACATTCTGCTGCAATCAACGGGAATGTCGATATCGCTCGATTT
TACGTTGAATCCGATCAATATCTGAACGCCCAAAACGGGTTTAGGAATAC
GCCCCTTCATTGTGCCATTCTAGGGCGTAAAATGGATATTATAGATATTT
TATTGACTAAAAATTTGGATCTATCTATGCAAAACATTGATGGAGACACG
GCGCTTCATTTAGCTGTACGATCAAACATGGTAGATTTGGTTGCTAAGTT
GGTTGCTAAGGACGTCAAAAATATTAATTTGCAGAACAAAGATGGCGACA
CTGTTTTGCATATTTCAATTTGGCAGATGAATGAAAAAATAGTAGAGCTA
TTGATTTGTGATGAGCTTAATATTGATATTCAAAATAACTCAATGGATAC
TCCCTTGCATTTATCCGATAAACTAAACAGCCAATTAAAATCAAGAATTC
TTGAACAAGCTTTTAAAGGAACAATCGGAAAACACGATCACGATCACGTG
ATATCTTCCGACCAATCAAAAGACAGTTTAGGAGAGGGGAGCCAATCAGC
AAGAAGCATGGATAGTGATAAATGTATTGGAAATATCACAAACAACAAGG
CTGAAACACTCTTACATATTTTTGCCGCACAAAACGAGAAAGACCTTCTT
GAAAAAATCTTATCTCTAAGATGTACCAAAACAAAACTCAGGAACAATAA
CTCAGAAACAGCACTTCATGTAGCAGTTAAAAACTCAAATATCGAGTTGA
TAGAGTCACTCATCAGAGAAGATTTAGAACTTCTCAATATGGCAGATAGC
AATGGGGACACCATCTTACATTACGCAATCAAAGCTAAAAACGTCGAATT
AACTGAAAAGTTGATCAAACTAGGAATTGACTTGAATCGCTGTAATAAGC
TTGCCCAATCTCCACTGCATTTGTCGGTCAGCGTTGAAAACACCGCCATA
TTGAGACTTCTTTTAAAAAAGAATGCTAACCTATGGGTTCAAGATAACAA
TGGTTGTTATCCAGTGCATTACATTGCTAAAACACGGAACATCGAAATTC
TCCAATCATTTGCCGAGTTATTTTCAATTCAACCAATCACCAGCCAGCAT
CAACGAAATGACGTCATTTCGCTCCAAAGTGACGTCATTAATATAATGGA
TATGCTTGATAAAGAAGGGAACAGTCCTCTCCATACATCTGTTATCGAAA
ATAACGTTCCGTTTTTTAAACTTTTTGTCCGAAATGACTGCACTCATCTG
ACGTCACAAAACAAAAATGGTGACACTGTTTTACACTTTTTGGCTCAATA
TAATCGGAACAGATTTCTTGATTTCCTTGACTTGAGTCATGTCAATACAA
ATGTATTAAATAATAAAGGACAAACACCTTGGAATATTGCTTTAAGCCGT
GAATATAGCGATGTAGCGATGTTTCTGTTACAAAACAAATGGAACTTATC
AATGGATATTTGAATACAGCCAGTTTCGGCACGGAACTCAGGAACTATAG
ATCGTAGACGGCGTAGCAAAGACATTAACCGATCAATGACGTTGTATTGG
GACGGCGCAATAGACACTCCAACAAACCCGGAAAATCTCGTCTTCAACGT
TAGTATGAACGCTAAAATTCAAACAAGTAGTTTCCAAGACACTATCCTAC
ATTCTGCTGCAATCAACGGGAATGTCGATATCGCTCGATTTTACGTTGAA
TCCGATCAATATCTGAACGCCCAAAACGGGTTTAGGAATACGCCCCTTCA
TTGTGCCATTCTAGGGCGTAAAATGGATATTATAGATATTTTATTGACTA
AAAATTTGGATCTATCTATGCAAAACATTGATGGAGACACGGCGCTTCAT
TTAGCTGTACGATCAAACATGGTAGATTTGGTTGCTAAGTTGGTTGCTAA
GGACGTCAAAAATATTAATTTGCAGAACAAAGATGGCGACACTGTTTTGC
ATATTTCAATTTGGCAGATGAATGAAAAAATAGTAGAGCTATTGATTTGT
GATGAGCTTAATATTGATATTCAAAATAACTCAATGGATACTCCCTTGCA
TTTATCCGATAAACTAAACAGCCAATTAAAATCAAGAATTCTTGAACAAG
CTTTTAAAGGAACAATCGGAAAACACGATCACGATCACGTGATATCTTCC
GACCAATCAAAAGACAGTTTAGGAGAGGGGAGCCAATCAGCAAGAAGCAT
GGATAGTGATAAATGTATTGGAAATATCACAAACAACAAGGCTGAAACAC
TCTTACATATTTTTGCCGCACAAAACGAGAAAGACCTTCTTGAAAAAATC
TTATCTCTAAGATGTACCAAAACAAAACTCAGGAACAATAACTCAGAAAC
AGCACTTCATGTAGCAGTTAAAAACTCAAATATCGAGTTGATAGAGTCAC
TCATCAGAGAAGATTTAGAACTTCTCAATATGGCAGATAGCAATGGGGAC
ACCATCTTACATTACGCAATCAAAGCTAAAAACGTCGAATTAACTGAAAA
GTTGATCAAACTAGGAATTGACTTGAATCGCTGTAATAAGCTTGCCCAAT
CTCCACTGCATTTGTCGGTCAGCGTTGAAAACACCGCCATATTGAGACTT
CTTTTAAAAAAGAATGCTAACCTATGGGTTCAAGATAACAATGGTTGTTA
TCCAGTGCATTACATTGCTAAAACACGGAACATCGAAATTCTCCAATCAT
TTGCCGAGTTATTTTCAATTCAACCAATCACCAGCCAGCATCAACGAAAT
GACGTCATTTCGCTCCAAAGTGACGTCATTAATATAATGGATATGCTTGA
TAAAGAAGGGAACAGTCCTCTCCATACATCTGTTATCGAAAATAACGTTC
CGTTTTTTAAACTTTTTGTCCGAAATGACTGCACTCATCTGACGTCACAA
AACAAAAATGGTGACACTGTTTTACACTTTTTGGCTCAATATAATCGGAA
CAGATTTCTTGATTTCCTTGACTTGAGTCATGTCAATACAAATGTATTAA
ATAATAAAGGACAAACACCTTGGAATATTGCTTTAAGCCGTGAATATAGC
GATGTAGCGATGTTTCTGTTACAAAACAAATGGAACTTATCAATGGATAT
TTGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_003867	XLOC_003867-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000300_pilon	genome	sc0000300_pilon:178769..182519 -

Properties


Property Name	Value
Aaloc	1162-2802:1642
Aaloc	1-1161:3752

You are here

XLOC_003867 (mRNA) -