XLOC_003802 (mRNA) -

Overview


Name	XLOC_003802
Unique Name	XLOC_003802
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000059_pilon:335363..343981+
coding sequence from alignment at sc0000059_pilon:335363..343981+

mRNA from alignment at sc0000059_pilon:335363..343981+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_003802 ID=XLOC_003802|Name=XLOC_003802|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8619bp|location=Sequence derived from alignment at sc0000059_pilon:335363..343981+ (Clytia hemisphaerica_ch_hm2_pilon)
tTTTCTTTAGATTCCGATTTGATCTCCATTGGCAAATTTTACAGTCATTT
TCTGCAACATACTGGTGAATTACTCAAAACAAGTTCAACGCTATCCTTCA
AAGAATCTAATTATGAAGACTCCTTACTTGGTCGTCTTGGCAACGGTCTC
CATAGAATCATTCATAGGGACAACAAAAAAGCACGATACTCTAATTCAGA
GGTGAGACCCTTAAAGCACATAAAAACCTTTTTATCCATTGAATAGCGTT
TTAGGGTATTTAAAAGGTGAAAAATATGAAGAGCTTTCTTCATCGCCTAA
CCCTGGTGGGCGacaaactttttccaaaatgttggcccTCTCAAACAGCT
TTCCGGGGCCTATGTAAGCTAGGCCTTTGTCATTCTTAGACCAATGTCTA
TTTTGATTATGAAAATTCTACTGGGCGTCTCaaaaaaaaGtccccctctt
tgaagtgaattttctcgagttctatgatCTTTTAAAGGATCAATCTTTTT
GCATTGAAAAGAGgagataaacttaaattataaggggtcatttgtcaaac
ttttttcaactaGATCAAAAGGTATGGTCTAAATActgaaacattacttt
tcaaaaaagccGAAAAAGACaccaatgtttttttattcatttggaaATGT
ATTTCGATTTTTTCTAAACCACTTATCTAAACGATTAACCATTCCTGCAA
AAGCAGAATCGAATTTCGAATCGTTTGAGGGTCTGAGTTTGTAAAGGAGA
ACAGGAAATTGACTTGACCCCTGAACGGGAAGATCTTCCCGATGATGTTT
CAAAAATATCTCGGCACCCAAATAGGAAGATAGTGAATTCTTCCTAATGC
AAAAGATCTGCTGTTTTAGGAGGTTGGATTTCTTCAAAACAGAAACGGGA
AgatagaaaaatgtaaacaaagaaacAGACTTCCCAATTCAGAAGAAAAT
CCTTTTAAAATCCAGAaaatcgtcgcatcaaaataaaatcacttAATTTG
CTGTGTTATAATCAAACAGTTTACATGACAAATTTCAGATTAAAATATGT
TTTGTGTATTTGTTAACAAGTCTTGGCACAAGTTATCTTTCGTCAAAATT
CTATCCTCTAAGTAAGTTGAAAAAAGACAAGAAGCCTGTTGgcttgaagg
cccagcgaaaagtaacgtgaaGATAAagagcgtgcaaaacagcaaatgta
tgaccctgttgacatggatcaaagtgaagacagggaaaatttttccaaaa
tcgccactgtacttctcattggttagacgcttgaaattttatttctattt
ctattatagtagggggccaaacCTTAGGATCCGTGACAACTTTTCTGGGA
CGCAACAACACGAATTTATTTCGAAAGTTTAATgtatttaaagtcatttt
agcgAGGGGGGTCCGCTGCTAAGGCCTGGCAAAATTCTTTATGGGCCAAA
GACTGACGTTACAGGCAAAGCTGtaaaggcaaaaaatgggtaaaaaattg
acgatttttgaaagtcGTTTTCAACGGAAACGATCGATACCATCCGATAG
AGCgtgaaattttgagcaaaaaagtatactacaacaAGTCCCTTACTCAA
ACACACGAAGAAATACGGCTATTTTAAGTTCAAAATACTGTCAGTTTGTT
TatgatttagacaaaatttgacgtcaatcgtatTCAAACTGACAGTATTT
CAAACTTCAAATGGCCGTATTTCCTTGTGTGTTTAAGTATGGGACTtgtt
gtagtatacttttttgctcagaatttcatgctctatccgATGGTATCGAT
CGTTTCCGTTGAAAACgactttcaaaaatcgtcaatttttttacccattt
tttgcctttaCAGCTTTGCCTGTAACGTCAGTCTTTGgcccataaaaaat
tttgccaggccttagcagcggacccccctcgctaaaatgactttaaatac
ATTAAACTTTCGAAATAAATTCGTGTTGTTGCGTCCCAGAAAAGTTGTCA
CGGATCCTAAGgtttggccccctactattaggttgagttgcaggaggttt
tagaggcctattctcgcaactatagacgcttactaatgagcgtcccgtca
gcaccttgaactaactacccaattcccctcacatggcatgggttgacccg
ggcgaaggaacgtttacttgccaagtgaactgccgtgagtgggaatcgaa
ccctggcctcctgcacagaagccaaggtcaactaccactataccacggca
ccatattgaatggtctcctaccaaccggCGCTAGTTCACCCCGttgaata
ctctcgggtaccgtgagattgggtaacttgcatcagtggaggctaacata
acATGCATaacatacatagccctcaaatgaaagacctggttggtcattaa
aatacaactacgcagctccgctcgcagctctactctaccatttttgtttt
gatttgattttgtattttaatgaccagccaggtgtTTAATTTGAgggtta
tgcatgttagcctccactgatgcaagttacccaatctcacggtacctaat
agttggggggtttggaataagcggggtgaGGTTGGAAacaatctcaaaac
ttaataagcgggggggggggtggtggaataaaaatgtcctaggtggaaaa
tttccataaattatgcgcacccatagaaaaatattttaaaaaaccaGCGA
ATAtatagtgagtgggcgctttttaaccaattaggtgcactcacatattc
aggaatatccctgcaggcatgttacTTGGACCGGAcagtaaaccagaaaa
ataatctttaaaaaactagacgataaaatagtttacggtctgcatatcaa
ggctaataaaattcatgagatttaatgtgagttaacagttaatgtGAGTG
atagatccagaaatgaccattttcactgttcatgttTTGTAACCATGAGA
AATGTTTcaatctagttcaaatttacccatgagctgcattttagtgtcaa
ttaacagattccagaatcagtttatactttaaataattatttgagtcgag
tttgaaaaatcaagccaccgatcgTttaatgcgacagatccagaaatgac
cattttattcaatatatgtgtagaatcatgaaaaaagtcccaatcttgtt
caaatttacacatgagctgtattttagtctccattaacatgattccataa
tcagcttatttgaaataattctgtgtcgagtttgacaaATCAAGCCAtca
atcgtcaaacgagaccGATccaaaaataaccattttcacgcgtagcatca
tggaaaaagttccaatcttgttccaatttacacatgggctccattttagt
gtccattatcaaattccagaatcaatttacttgaaataattatgtgttga
gtttgaaaatcataccacgtcccaccactgCTGACCACCGTTATCTTGTT
AACAGCCTggaacagcgacagatccagaagtgactgttttcttatgtagc
atcaagaaaaaagttccaatcttattcaattttacacatcagctgcattt
cagtttatttatttctatttctatatcagaagccatcatttcctaaaaat
ttataaagtctttttgaaaacaagaaactaaaaatgaaagtgatttaaat
taaggtagaattttcactcataaaactttatgaaaacttgagcaaagact
ataaggtatggcagaatgttgaaaaaaggtttataaagaaaaataattac
aaaatttctttggtttgaaagtctcttggccactaaagcaaagaaaatgt
tcaagaaagtatgaatcaacctcctcgcttcgactgccatcttgttttgt
tttgaaaattgttttgaaggagcgcggaatcagaaaatatatcttttata
gccagtatccgactttagcaagcttttccctctccagacggcaaaattaa
aaagtgtgttactggttttaagcgccgtttctaccaaaacggacagacag
atACACGGACGGAAaagtgctaatgaaaggccctattgctagcgctgggc
caaaaatacCCACTTACTACCAGCTGGAAGAACCATCATATTTCAACAGA
AACAGTTATGCTTTCTAAACTCTCGACGGAAGGACCCTCCCTCTCTTAAA
TACATTATCCCCTTTTAGAAAGCACGATGCGAAGACTCAAATTATTTGCT
TCTTATTCTTCTTTTTCGAGATATCTATTTCTGTTATAAAAGATAAAATG
TGGGagaattcgaaaaaaaagtagcTTAAAGGTTTCAGAAAGgtaatcga
ccgccggaggcggtttctttcatagtggtacgctaatctcgttttgcctt
ggctcattactttgtctaccatttactttcggttatTTTAACAAGATTAC
CCaggtttttctctctttttttcctgaatgtcttttattcggaattgaat
aatcgagacatgaaaaaagACTATATTGTAAACTGTTTTCAATTagtaat
ctaaaatgtactagagatgtaccttaagggaagaaattttcgcgggaaca
aaatttcgcggttttcgcggattttgcctaaaaccgcgaaattaagttcc
cgtgaaattttacaaaatcgtcaatccgcgaaattaaattcccgcgaatt
ttaatttatttcacgcattTCCCAAAATTCgtactatttcaagccttaaa
acaggttttttgcttatttaataacgcttttggtcaagaatatcctgcaa
ccgcgaaattaaattcccgcgaatttttcgaaaatcgatgaaccgcgaaa
ttaaattcccgcgaaaaaaaaataatttgaccaaccgcgaaattaaattc
ccgcaaaaatttcttccctgcattaataatgtgcgcgcgctctctcgcga
gcgtgatgcgtgatggaaggcggtcgtttcagtgtggtttacatccacac
tgtgacctagtagaGTATAGTTATAGCTTTATTGGTCGAACTTCTCAACT
CAAAAATATCACAAGACCTTactttattggacctacctggtcctataaat
taaccgttgtccgtccgtccgtccatCCATCcattcgtctgttaccagct
tttctcgagattggctcattagtgttttctgatttttggcacaaagatgt
aaaatggcaatacccaaaatgtgacagagcccgattttcgaaaaatttcc
agtcgaaaatgccggaaatatgccagaaaaacttagtctgaatcgcagac
ctctacaaaaccccaggtagtataggtctgcttaatgatctaccaaccgc
tttccggttcgcaaaggaaatcttagcctatactagacgtcacccgcgtt
ttttctacgcaattaacgagataaaaaatcccggtttttagtgaagTGCT
CGCTAAGGAAATCTTGAcgagttaataatttgattgacattgatgtgtac
gcaaaacgatcgtttcgaacgttttcaatgtaatgtttacattcgaaatt
cgaatcccggaccagaaaaacaaaacagaaaaaatattaaaaaaacaatc
tgatgcacgcattatgtacagtctgtagatatattttgacttttgctttt
ataagatatctggtctgtaaatttatcaaaacttttccatcagctcttcg
gtcgaagctcaaaaaatacaaatatgaacacaaaagtgaaagaaaacaac
cagaaacactccaattttttcaaagaattgaagctaagtacctgaaaaga
tacaaaggtcacacagtattaaaaagtgaaatggcaaagctgaagaaaag
ttctttgtttgttttaacattcaaaggcccttgttgaaggaacaacaaca
ctcccttttgtagaatcataaataactaatgtcagaaatattcagtatga
cccccaaaatgtactgtatatacataactagaataccttgaaataatctg
caacatatctgtagaactgacaaaacaattatctggagcaaaagtgatca
acgaatccagtgtggtaaaaaaattatacactgactaatacaagtccaaa
ttcaagcatcaaaatgtagttttatgaagcaaaattttgttggtgcacac
agaagatacatcagggcacatAAATCCAATAAATCTAACTtatcatcttt
tacaaaatcttcacattaaacaagaaaggaggaagaaaaacaagcaaact
tccttccgcctacttttttttcgaaatccaaatatattttccaatctatg
atttggtgcctcacagaaaattttaacattacgtaatgttatatttatag
acactcgccagctaaaaatgtctttagccgtatatcggctaaagtcGAAg
tcggcaaatctctggacaaaggaaatatagtttattcattcattcagcAC
GAATCCATttgtggatgccagcagcctaggaaAAACTgggtttttggcat
tttctcgagattttatcattagttttttctgattttttgctcaaagatac
GTATTAtcattaacaatgcccaaaacatggccgagtccgatttttgagaa
aaaatttcttccggccgaaaatgccggaaatatgccggaaatcgccgttt
ttctggattttcattggactttttccttataattggttgttttttcattc
aaaaacattattaatagcaatgcccaccatcaagcatgttttcaattttc
aataaaattgatttttgaagccggaactatttaaaaatcgccggaacaac
ctattttcgccggaaagacagtatttcttgaatttctcgagctgtacttt
atatttttttatgaaattttgcaaactgatgcaatatgacaatacctaaa
atgtaacggagcccgattttcgaataACAAGTATACCCAACTTCATCCAT
CCGACAACTTTGGGAGTCTTCAGGCTGCTTTAGATTTTTCTGGTATATGC
AGTATCAAACAGACACGCATTCTTAGATTCTAGCTCGACTGAAGTTAGGG
GGAGTCATTATAAACCAGGTGGAGTCTAAATTTGCTAGGAAATATTAACT
CTAGGGAGTCATAATTTActagtttataagaactggGGAGTCATAATAAA
CTAGTGTATTTTAACTGGGGAGTCACAATAATCTAGTTTATTATGACTgA
GGGGGTTATAATTTAGGGGAGTTGAAATTAACTGTGACACCGGAAAACAT
GAAAGagacaCGGAAGCGACGAGATATCGTTCGGAAAGCAAAACAAAAGT
TCGTTATGTTTCATTTTAATTTGGTTACACATCTTATGACTTTTATGTTT
CACTTACTAGAGATATTATCTATGGGAGAAAAAgcttaaaggcttgggga
cacaagaagtttttttcgcgttggtgcaatgtaaCATgttccatcccacc
aacacagaaaaaaagtgcgtgtcccatggtttcttttttttttcatggga
caaaaagtgagggaaatacccaaaagacacgctgatggtgagagaagcac
aaatgttattaaaagaaaaatgggatgGAGATACGTGAAAGCGTTTCAga
ttggtgggatggagcatgttgcattgcaccagcGCGAAAGAagcttctcg
tgtccccaagccttaaagcTCTACATCctccataaaaaaattataaaacc
aaTATATTCTaagttgtttgttttttatcctTAACAGACTTTAGTGGATA
TCTTACGTCAGCATATTCTTCAGTTCACATCAAAATTGCACCAACTGGAA
AATCGAAACGTGTAGAGCAAgagaaatacaaagaaatgaAAGTATTAAAT
TACGTCATCAATTGGATCGCCACCAGAACGAGGCTGCATTGCGAAGGGAA
GAAGAAACGACCCTAAAGGAACGGGTCAGTATTTTCTTTTTACGATAAAT
AACCGTAGCATTATGGAAATTATTGTCTCATTatgtcttttgatttcttt
tataaactgtatcaaagaaattctaagctcgcccgatgaaataagactct
ttagtagaactcaagattgctctgaacattctatcttactatcagtattg
aagaaattagccttctaatatacgaaaattaaataaaacttcgtccgcga
aacaagtttatgttcaatttcgttatccgttaaattttgttttgaaaata
taattttttcaagccagaaaatgaaaagttcattatAAGCACACATGATT
TCAGATTCATTATTAGAACTTACTGCGATGATTAAACTCTACTTAAGGAA
ATAATTACTCTCGGATACCTAAAAATTTTGCGCcggggggatgagggggc
gggtgtcgggttgaaaaaatctccaaaacttaaaagcgggggggTAAGTA
TGAATAAGATTGTCCTGGGTgggaaacttttgaaaaggaggctaatacag
ctgaattaggagaggagaacattcaaaaacattttcccaaaaattaataa
gcgggggcgGGGGTTGGAacaagaatgtcctgggtggaaaattaattagc
ggaggggggggctattaggtacccgaaagtaccttaaaaaaacttgcttt
ttaatttcacagatttttgAATTAGAAGAACGAATGAAGAGTATGGTATA
CACAGAGCAATTTGATGAA

Coding sequence (CDS) from alignment at sc0000059_pilon:335363..343981+

>XLOC_003802 ID=XLOC_003802|Name=XLOC_003802|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=890bp|location=Sequence derived from alignment at sc0000059_pilon:335363..343981+ (Clytia hemisphaerica_ch_hm2_pilon)
tTTTCTTTAGATTCCGATTTGATCTCCATTGGCAAATTTTACAGTCATTT
TCTGCAACATACTGGTGAATTACTCAAAACAAGTTCAACGCTATCCTTCA
AAGAATCTAATTATGAAGACTCCTTACTTGGTCGTCTTGGCAACGGTCTC
CATAGAATCATTCATAGGGACAACAAAAAAGCACGATACTCTAATTCAGA
GtTTTCTTTAGATTCCGATTTGATCTCCATTGGCAAATTTTACAGTCATT
TTCTGCAACATACTGGTGAATTACTCAAAACAAGTTCAACGCTATCCTTC
AAAGAATCTAATTATGAAGACTCCTTACTTGGTCGTCTTGGCAACGGTCT
CCATAGAATCATTCATAGGGACAACAAAAAAGCACGATACTCTAATTCAG
AGACTTTAGTGGATATCTTACGTCAGCATATTCTTCAGTTCACATCAAAA
TTGCACCAACTGGAAAATCGAAACGTGTAGAGCAAgagaaatacaaagaa
atgaAAGTATTAAATTACGTCATCAATTGGATCGCCACCAGAACGAGGCT
GCATTGCGAAGGGAAGAAGAAACGACCCTAAAGGAACGGACTTTAGTGGA
TATCTTACGTCAGCATATTCTTCAGTTCACATCAAAATTGCACCAACTGG
AAAATCGAAACGTGTAGAGCAAgagaaatacaaagaaatgaAAGTATTAA
ATTACGTCATCAATTGGATCGCCACCAGAACGAGGCTGCATTGCGAAGGG
AAGAAGAAACGACCCTAAAGGAACGGatttttgAATTAGAAGAACGAATG
AAGAGTATGGTATACACAGAGCAATTTGATGAAatttttgAATTAGAAGA
ACGAATGAAGAGTATGGTATACACAGAGCAATTTGATGAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_003802	XLOC_003802-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000059_pilon	genome	sc0000059_pilon:335363..343981 +

Properties


Property Name	Value
Aaloc	388-444:8563
Aaloc	307-387:7794
Aaloc	271-306:7756
Aaloc	202-267:7688
Aaloc	1-201:1

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XLOC_003802 (mRNA) -