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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000259_pilon:38390..42946+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_003257 ID=XLOC_003257|Name=XLOC_003257|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4557bp|location=Sequence derived from alignment at sc0000259_pilon:38390..42946+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaaAACCATCTTTCTCATCACTTTCATCACCTACCTCACCATAACCTC
AATCAATGCAGCAAAACATTTCGAACAGAACGATTTCCAATTATACTATC
CATTCTTTCCATTcggcaaaaattttgattacgTCTTAACTGACCCGCCG
AATTACATCTTTTCAGAGACTGATGAAGACCTTGGTTTCTTTAATCATTA
CCTGAGTAAAGATCTTCCAATTTTCCACGATCTTCACGTCCGAGACATCT
TCGTAAGTATTTCTTTCCCAGTTCTTTAGTCCACCCAGTTAAAGTCCAGA
GATTCATAATCGGTTGCAAAGCTCTTTATCcttaaaattgaatcatttcA
AGTtgacaatttaattttttttggttgtgTGGGACAAGTCTAgtttttct
caataaaaattgacattcaaGATCTCGAGTTTTCTTCAGTAAActcaact
ggcacacaacgtcaactCAATTGAACATTGAAACCACGTTGTGTGTCAGT
TgagaaaatgactttaaaaccAACCATTAGAATTCTAACGCCATATTGTT
TCTCATAGATGGGCGTGAATGGATACGTGTCATTTGGTGCACCGTACCAA
TCAAACAAAGCAGAGAAATATCCCGCACCTTTCCCTGGGATTAGCGTTTT
CCACACCGACCTCATTTTCACGGACCTGAAAGACTCGCATTTCTCGTTCC
AAGAATATACAGAAAAAGATAAAGCTTTCATGGCGCTTGCTCAATTTGAA
TTGGAAGTTTTTGGTCAAGTGAAAAATTTCTACCCTAATCACGTGGTCAC
AGTCACGTGGAGTAAAGCACAAAAGAAGAACGGCAAAGGACAGGTAAGAA
TCAAATATCACTTCAAATTTTACCCCCAGCTTTTCATCTTTTTATCGTCT
CTTCAACCTCGACtttttttcatccccatttaaattcaatggaaaaggtc
tcgggtaacttaatgcatgtcccagaattgcattaatttttccgccccag
ttccagtccctaaaccataacaaactatacatttttggaagcgtatttag
atgtagaataccgtattcggtgtaacttaaattttttctcagtataatta
gagatatcttaagaaaacctgattatgacgtcatgattgatgacgtcata
aatacaaaaagttgaatatctcgagaaatataaatcaaaactttatgaaa
tttggaccagtgataaagtacattgagatgtttcaaaaagttttgaaagt
atttccgaaaactaatgacgtcagcagaaattgcaagaattcgaattttt
gcgataaaatgctgacatcagcaaattttcaaattttttaaaagtaattc
ttttcctcttgatgagttctatcattggtcaaaatttcataaagatttga
gtattagttcttgagatattcaactttttgaaattatgacgtcgtcaata
atgacgtcataatcacgttttcttaaaaaaactcaaattctgctgagata
gaatttaagttacaccgaatacggtattctacatccaaatacgcttccaa
aaatgtataatttgttatggtttagggactggaactggggcggaaaaatt
aatgaatttttgggacatgcattaagttacccgaggttacactccaaaac
caacCCCACCTGGTTTGTgctgggaacaatagaatttctatcccaattgg
gatttcgatagaaaattTTACCCCCACAGTTTGAAGAGGTTCAACCGGGG
CCGCGAGAAAGTGGTGTCTAGTTATAGTGTGTAGAGAAAATCATGATGGt
gagttttaaaaatattgattcAAAGGAATGCGTTTTCCCAACAATCTGAC
TAGAGCTTAGTACAAACTTGTTCCAAATATCACAAGATAaaactttcttc
tcttttctttcACAGGCTACTTTTCAACTTGTTATCATCTCAGATGGCTT
CAACACATATTTCGTGCTCAATTACAAGGATATTAATATCAGTCGTCCCA
AGAAAAACTTCTGCCCTGTTACcgtaagtttttcaaaatgttttgaagaa
aaatttacaaGACGTGTGGATGTCCCGCGTAAGATGCTTTCTATTTCCCA
ACTCTCTGGTAATTCAAACGAATTAATCTCCCCTTTTAAGTTCAAATTAG
CGATAGTTAATAGTTTAGTACTTGAAAAAATGAACAGACAAAAGTTCATT
GGGTTTACTTTCATCAGCTCTCAGCTCTAATTGGTCTAACAAGACAAGTG
AATTCCTATCAACTTTAAAACTCATACCCGTAATGTGTGGTACCAAAAGA
AGATTCTAATTTTCAGTTCAATTAAATTCATCTTCCTCTGTTTGTTTTTT
ACAGATTGGTTGGCAAGAAAATTACAAGAGTTATTTCGCACACGAAAACA
TGCAACTCGTCCCAGGCTCCCCTTATAAACCAATTAGAATGCAGAGAAGA
TCAAATGTTCATTTCCCAGGAAAATGGATCTACAGTGGTTTCGCTAGCAG
TAAGTTTCTTGCATTCTCCAATTCTTGATATTCGTGTCGTAATCTTTTGT
ACGGAAACATACGAAATACACCGGGAGTTTACCACCAGTTCCATTGTTTG
AATCCAAAACTGGTAGCAAACGCCCGGCGTTTTTCGCGGGAATCTCCGTT
TGAATAATATTCTTAATTTGAAACACAGTGTTCTTCAACTGTTCTTATGT
AAAAGGGTTGGCTACAAAAAAGAATTTGTCACTCTAATGATAGTTAATCC
TACTCCCATTAACAACCATTTAATTTACTCTCATTTTAGAAATCGCATTG
AAAAATATGCAAACGCCTCCACCCTCACCTACTACCGCCAAACCACTCCC
TGCCGCCTGCCCCAGTGAAGTCTTCTGCAAATTCACTAAACGTACTATCA
ATGCTTGGCCTGGGTACCCTGGTTTCTACGTTGTTTGTCCACCAGGAGGG
AAACCAGTCTGCATGGCTTGTGCAGGAAACACTGTCTTTAGCAAGAAATG
TAGAACTTGTGTCCATCCTGAGCaattgaaaaaagccaaaaaagaaGGTT
TGTTGTATTTTgacttcccagctggcacacaacgttgtttcaacgtttat
ctaacattcacaacgtccataaaacgttaaatgaatgttgaaacaacgtt
gtgtgccagctgggttatttCGTTTTCAGTCTTGTTTCAAAAACTCGAAA
CTTTCTTGAATGTTACTTGAATGTTTCTTGAATGTTACTTGAATCTTTCC
TAAATTCGAATAAGATTTCTTGTCCCAACAGTTAACAATGATATATAAAA
CAGTCTCCATAGCTCGAAACATTTCACTATGATAACTGTGTATAAATGGT
TCTGGCATGAAAATATTCCCACCTTGAGAAGATTAGGAATTCACTGCTTA
TTGCATTTGTAATTAGCCAAGGTTCTAAACTAATAGcataattttgactt
taaaaagatgAAAGACATCACGTCTGACACTCTGACTAATCTGTAATAGA
CAAAGACATACATATGGTATTAACCAATCATCAACGAAGACACTTTTTCT
TAATAATTTCTCTCTTTCTTTTAGTTTGTCCAAAACCACAAAAAAGCTCC
ATGAAGAAAGTCAAACAAACTCCTCAATGCAATCACCGTGAAggtaaaaa
tttaatttatttgttTAATACGGCCGTTTTGcgtaagattcctttgccat
tTTTCATCGGAAAGAGACCAGGACTAAGGGAGTTTAAAaataagcttcgg
aaagttaggctGTTTCGTAAtcaaacacaagattttccgtacctttagaa
gGAAACCTTTTCAAATCTCATGCCGGCTATCCCGGGACAAATATAGCGGG
AAAGTTAGGAGAACTATAGTGCAGGAAtgggaatcttatgcaaaacatAC
AAGTCTCCACAGTATCATTCAAACTCGAACCTAGTCCCTTAGCTCtcttt
tttaaagtttgatatcaCTCAGGAGATTGTATCATGTCCATGAGTAAACT
AAAGAAGTGTTGCAAGTGCTCTGGGTATATCTACATTTTACTCAAGTTTT
TTCCACCTATTACGTCATTCAACGCGCGTTTTGAAAACTCTTTTATAAGG
TTTCAATCTTTCATTAGATCATATTAAACTCGAGCCCAACTCCCTGATTG
CTTTAAGAGTTGTTGTGTTTGATATTTTGTTAGATGTTTGCTCTTCGtgg
aaaactgaaaataaattatttaaagtTCTATAGTAAGGTGGCCAATAATT
GTCCACCATACCATCATTTTGGGCGTGGCCTACCTCGAAGACGAGCTTAA
CtaagtaatatttttttatttttacagcaAAACGATTCTGCACTTTGAAG
AAAGAACAATGCCATAAGGGCAAAACAACTTTATTCCAAGGACGCTTCCG
TAACCATAACGACCTTCTTAGCCGCACATTTTACCTGTGTGTAGACATCT
ATGGTAGCTTCTGCATGCCTTGCCCGCCTGGAACAGTGTTCGCACGAACT
GGACCACATATGGGTGCCTGTGTCCATCCTTATCAAGCTAGAAATATCGT
CTGGTAA Coding sequence (CDS) from alignment at sc0000259_pilon:38390..42946+ >XLOC_003257 ID=XLOC_003257|Name=XLOC_003257|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2694bp|location=Sequence derived from alignment at sc0000259_pilon:38390..42946+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaaAACCATCTTTCTCATCACTTTCATCACCTACCTCACCATAACCTC
AATCAATGCAGCAAAACATTTCGAACAGAACGATTTCCAATTATACTATC
CATTCTTTCCATTcggcaaaaattttgattacgTCTTAACTGACCCGCCG
AATTACATCTTTTCAGAGACTGATGAAGACCTTGGTTTCTTTAATCATTA
CCTGAGTAAAGATCTTCCAATTTTCCACGATCTTCACGTCCGAGACATCT
TCatgaaAACCATCTTTCTCATCACTTTCATCACCTACCTCACCATAACC
TCAATCAATGCAGCAAAACATTTCGAACAGAACGATTTCCAATTATACTA
TCCATTCTTTCCATTcggcaaaaattttgattacgTCTTAACTGACCCGC
CGAATTACATCTTTTCAGAGACTGATGAAGACCTTGGTTTCTTTAATCAT
TACCTGAGTAAAGATCTTCCAATTTTCCACGATCTTCACGTCCGAGACAT
CTTCATGGGCGTGAATGGATACGTGTCATTTGGTGCACCGTACCAATCAA
ACAAAGCAGAGAAATATCCCGCACCTTTCCCTGGGATTAGCGTTTTCCAC
ACCGACCTCATTTTCACGGACCTGAAAGACTCGCATTTCTCGTTCCAAGA
ATATACAGAAAAAGATAAAGCTTTCATGGCGCTTGCTCAATTTGAATTGG
AAGTTTTTGGTCAAGTGAAAAATTTCTACCCTAATCACGTGGTCACAGTC
ACGTGGAGTAAAGCACAAAAGAAGAACGGCAAAGGACAGATGGGCGTGAA
TGGATACGTGTCATTTGGTGCACCGTACCAATCAAACAAAGCAGAGAAAT
ATCCCGCACCTTTCCCTGGGATTAGCGTTTTCCACACCGACCTCATTTTC
ACGGACCTGAAAGACTCGCATTTCTCGTTCCAAGAATATACAGAAAAAGA
TAAAGCTTTCATGGCGCTTGCTCAATTTGAATTGGAAGTTTTTGGTCAAG
TGAAAAATTTCTACCCTAATCACGTGGTCACAGTCACGTGGAGTAAAGCA
CAAAAGAAGAACGGCAAAGGACAGGCTACTTTTCAACTTGTTATCATCTC
AGATGGCTTCAACACATATTTCGTGCTCAATTACAAGGATATTAATATCA
GTCGTCCCAAGAAAAACTTCTGCCCTGTTACcGCTACTTTTCAACTTGTT
ATCATCTCAGATGGCTTCAACACATATTTCGTGCTCAATTACAAGGATAT
TAATATCAGTCGTCCCAAGAAAAACTTCTGCCCTGTTACcATTGGTTGGC
AAGAAAATTACAAGAGTTATTTCGCACACGAAAACATGCAACTCGTCCCA
GGCTCCCCTTATAAACCAATTAGAATGCAGAGAAGATCAAATGTTCATTT
CCCAGGAAAATGGATCTACAGTGGTTTCGCTAGCAATTGGTTGGCAAGAA
AATTACAAGAGTTATTTCGCACACGAAAACATGCAACTCGTCCCAGGCTC
CCCTTATAAACCAATTAGAATGCAGAGAAGATCAAATGTTCATTTCCCAG
GAAAATGGATCTACAGTGGTTTCGCTAGCAAAATCGCATTGAAAAATATG
CAAACGCCTCCACCCTCACCTACTACCGCCAAACCACTCCCTGCCGCCTG
CCCCAGTGAAGTCTTCTGCAAATTCACTAAACGTACTATCAATGCTTGGC
CTGGGTACCCTGGTTTCTACGTTGTTTGTCCACCAGGAGGGAAACCAGTC
TGCATGGCTTGTGCAGGAAACACTGTCTTTAGCAAGAAATGTAGAACTTG
TGTCCATCCTGAGCaattgaaaaaagccaaaaaagaaGAAATCGCATTGA
AAAATATGCAAACGCCTCCACCCTCACCTACTACCGCCAAACCACTCCCT
GCCGCCTGCCCCAGTGAAGTCTTCTGCAAATTCACTAAACGTACTATCAA
TGCTTGGCCTGGGTACCCTGGTTTCTACGTTGTTTGTCCACCAGGAGGGA
AACCAGTCTGCATGGCTTGTGCAGGAAACACTGTCTTTAGCAAGAAATGT
AGAACTTGTGTCCATCCTGAGCaattgaaaaaagccaaaaaagaaGTTTG
TCCAAAACCACAAAAAAGCTCCATGAAGAAAGTCAAACAAACTCCTCAAT
GCAATCACCGTGAAgTTTGTCCAAAACCACAAAAAAGCTCCATGAAGAAA
GTCAAACAAACTCCTCAATGCAATCACCGTGAAgcaAAACGATTCTGCAC
TTTGAAGAAAGAACAATGCCATAAGGGCAAAACAACTTTATTCCAAGGAC
GCTTCCGTAACCATAACGACCTTCTTAGCCGCACATTTTACCTGTGTGTA
GACATCTATGGTAGCTTCTGCATGCCTTGCCCGCCTGGAACAGTGTTCGC
ACGAACTGGACCACATATGGGTGCCTGTGTCCATCCTTATCAAGCTAGAA
ATATCGTCTGGTAAcaAAACGATTCTGCACTTTGAAGAAAGAACAATGCC
ATAAGGGCAAAACAACTTTATTCCAAGGACGCTTCCGTAACCATAACGAC
CTTCTTAGCCGCACATTTTACCTGTGTGTAGACATCTATGGTAGCTTCTG
CATGCCTTGCCCGCCTGGAACAGTGTTCGCACGAACTGGACCACATATGG
GTGCCTGTGTCCATCCTTATCAAGCTAGAAATATCGTCTGGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259_pilon | genome | sc0000259_pilon:38390..42946 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1120-1347:4330 |
| Aaloc | 1051-1116:3577 |
| Aaloc | 793-1047:2792 |
| Aaloc | 646-789:2355 |
| Aaloc | 538-645:1916 |
| Aaloc | 253-537:559 |
| Aaloc | 1-252:1 |
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