XLOC_002302 (mRNA) -

Overview
NameXLOC_002302
Unique NameXLOC_002302
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000295_pilon:400645..404105+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002302 ID=XLOC_002302|Name=XLOC_002302|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3461bp|location=Sequence derived from alignment at sc0000295_pilon:400645..404105+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGAACATCAAACTCTCCCAATCCGATCTCAATACCGTCACTATGGTGAA CAACTTACAAGTCCAGAAGACAAACCAAAGAAACATCTTGGCAGTTCTTC AAAACAGAATCAAATCCTCGGTCACATATTCAACTGAACAAACGATTACT GGATtgaacaaatttcaaaatgatgTCTATTTCAAGACATTGACTATAAA TGGAAATGTATCCGTTGGCAATCTAACCAATGGAAAGGACCTCTCTAACG TTTCCAGAGATGCAATCTACATTAACAAGGATGAAGTGTTCGAATCCCAA ATAACCTTCACTAGCAATATCACATTTGATTCCATCTCTGTCCAACACAT CAACAATATTTCGACAACCAAGCTTCGATCAATCAACAAAGCATCCAACA TCTCTGGACAACAGACTTTCCAAGACTTCCAGACATCATCAGCCACTCAA AACAACATTCAAGTCAATGGCTTAGTTGATGGTGTGGATACTTCAAAGCT AGTGCTATTGGATACAGATCAAAACATTACTGCATTGCATCAATTTACAA ACAAGACCACAATGCAACAGGATTTCCATATCCAGGGCCTGGTCAACAAT ATGGACATTTCTACTATTGCTTCAGACACCTTAAAGAAGAATAAAGAAGA CACAGTCACTGCATATCAACGATTCTCCAGCATAGAAATCAAGGGAGATT TGAACATGGCGGACAAGAAGACAATTAATGATGTGGATGTCTCCAATCTC ACTTCCAGTGGAATCTATCTGAACGCCGTCCAGGAATTTGGCAACATCGT ATTCCAAAACAACGTCACTTTCAATGACCAAATATCGCTTGGTGAAACAC TCAACAACGTCACAATCGATGATTTGGTATTCACAGATCAAACAACTGTC TTTCATCATCCAATCACATTCAAGCAAAATATCACATGTTCTGATCACGT GACCGTGGATGGAAAAATCAACAACCTCAATATTACTGGTTAGTCTTAAT TTAATAAGATACTTTAGATTTTCGTGTGATTATCTGTAATTATCTTAACC CGTAGCGTAGATGCTTTAAAGTGCAGCACATTTTGTAAAATCACTCATTT AAACTTTACTCTGcaaaagtttcattttcattcaaagAACAAACTTAATC CATCACCATTGGAAAatttaaatatgttttttaGAAACGGGTTGTTTATA ACATTCTTTTAATAGGAATATCTTTGAAATTAATATAGTCGGGCTTAAAA GTAGACCAGTAACTGAAATCAATTACATTCTTATTATTCTAGAAGACATC ATGGACGTTTCATCCAACCAAACCATTACTGGCAACACCATTTTCACCAA GAATCTCCAAATGTCAAACAATCTTCAGGTCCATGATCATCTTGATGGAA TTGACATCAATGCATTTATCAAGAACGTTATGACTTACAATACAACTCAA AACGTAACTGCAACAAAATTCTTCAGTAACTTGACCACAGATTCGATATG GTTCAACAACTGTACAGACCAACAATGTACCTGGTTAAACATCTTATTGA AACTTAAGGAAGAATCAATCCATAAAACCAACGGACAGATATCTGTTAAT GGAACTAAATCCTTCTCAGATGTTTTAATCCGTGGTAATCTCACTCTTAA TGGTTTATTAGATGGTTTAGAATTCCCTGGTGATTTCTTGCAGCGATCCA TTGATGAAGTGATCAATGGTACCTACACTTTCAACAACGTCACATTCGTC AAAAATATCACCGCTGATACGCTAAATGGTTACAATCTAACTGAACTCTA CGAACGTGTTTTGAGGAAGGTTGGCCATGAACAAATCGTCATCGCCAATT GGTCTTTCAATGATCACACTCACTTTGATGAACTTCAAGTTGATGGGTTG GTTGACGGAGTAAATCTATCACGTGATGCACTTTTAGCCAATCAGGATCA TGTAATTTCTGGGGAAAAGACTTTCCAAACGGTACCCACGCTAAACGTCT ACTGGTGCATAACATGACAGTCAGTGGTCTGATTGATGGCGTCAATTTGA CTCAATTGAATGAAGAACTGGTGACAACATTAGCAGATGACATCATTATC AAAGGGAAGAAGGTTTTCCAAAACCACGTGTCGTTTGGCGGTAATTTAAC GGTGGGATTGATCGACGGTGTcaacatttcaaaattgaatGATCAAGCTA TGAAGCTGGATGAGGATCAAATTGTCACTGGAAAGAAGGTATGCACATTT AgaattatcaaataaatttttgaaagagcCTGAAGAATTTCATGAGCGtt ctttcttaattttcttaCAGCCATTCTTCGTAATCTTTATAAATGCTAAT AGTGGTGTAGCTCGAAATGGTGCTTAAAATACATTTAGTTCATTCAGTGA TTTCCTcacaattttcttttgatcacTTAAAGTAAAATCTCTGGCCCAAC CTTCATACTCTGTTGAAAATTCCTTCTAACAATTGAACAAAAGATTCAAT CAAAATTTGTTACATATATCGTGGGTCTACTCTTAGAAAAGTTTTCaccc tttttcagattttccaagagAAGATTGAAGTCTCGATGGAGAATCTCAAA GTTGGTGGTTTGATCAATGGAATCAATTTGACCGAACTTCTACAACAATC CATCAACAAGAACGAGCCTTCAGTTGTGATTCGACAAAACTCGACTATCC AGAATCTAACAATCCGTGGTAACACATCCACCCATGCATTGAATGGATTG AATTTGACCGACATTGTTGGATCAGCCTTGATGAAAGATGGTGATCAAAC TATCCATGGTGATGTCTACATAAATGAGCTTGTTATCAATGGCGATCTCA ATATTACCAACCTTAACGGTCGTGACTTCTTGGAAGAAGTGATTCAGCTT AGCAACCCAGGATCCATTTCATCTCACCAATTCTTCCAAGACGGTATCAC AACACAGCAGTTGGTCACACAACTACTCAATGGTCAAAATCTAACAGAGT TTTTCAACAGTATTGTCTTCATCGATCAAAACGCAACTATTACCGGCAAG AAGATTTTCACTTCAGAACTTCGCGTTGATCATCTGATTGCTCATAGTTT AATCAACTCCAAGAATCTGACAGAGCTGATGGCAACGACCCTATTGAAGC AAGGCAACCAATCAATCCACATACCAACTACATTCAGTCACGTGATTCTA CAACAGGATTCTGATCTCATTTCGCTTAATCAACATTCAAACGTATcaac attcgaaaaagaaatcttgTACAAATGCGAAGGACCTAAAAGACACGTGG TCGGTAACCATGTATACCAGAAAGCAGAATTCGGACAAAGATCGACTATC GGACACGTCAAGGCTCAAGGATTAGTCAATGGATTAAATATTTCATCCCT GGAGAAAGAAGTGGTCACTAAAACTGGAAACCACAGTATCGTTGGTAAGA AGACCATGAAA

Coding sequence (CDS) from alignment at sc0000295_pilon:400645..404105+

>XLOC_002302 ID=XLOC_002302|Name=XLOC_002302|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5674bp|location=Sequence derived from alignment at sc0000295_pilon:400645..404105+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGAACATCAAACTCTCCCAATCCGATCTCAATACCGTCACTATGGTGAA
CAACTTACAAGTCCAGAAGACAAACCAAAGAAACATCTTGGCAGTTCTTC
AAAACAGAATCAAATCCTCGGTCACATATTCAACTGAACAAACGATTACT
GGATtgaacaaatttcaaaatgatgTCTATTTCAAGACATTGACTATAAA
TGGAAATGTATCCGTTGGCAATCTAACCAATGGAAAGGACCTCTCTAACG
TTTCCAGAGATGCAATCTACATTAACAAGGATGAAGTGTTCGAATCCCAA
ATAACCTTCACTAGCAATATCACATTTGATTCCATCTCTGTCCAACACAT
CAACAATATTTCGACAACCAAGCTTCGATCAATCAACAAAGCATCCAACA
TCTCTGGACAACAGACTTTCCAAGACTTCCAGACATCATCAGCCACTCAA
AACAACATTCAAGTCAATGGCTTAGTTGATGGTGTGGATACTTCAAAGCT
AGTGCTATTGGATACAGATCAAAACATTACTGCATTGCATCAATTTACAA
ACAAGACCACAATGCAACAGGATTTCCATATCCAGGGCCTGGTCAACAAT
ATGGACATTTCTACTATTGCTTCAGACACCTTAAAGAAGAATAAAGAAGA
CACAGTCACTGCATATCAACGATTCTCCAGCATAGAAATCAAGGGAGATT
TGAACATGGCGGACAAGAAGACAATTAATGATGTGGATGTCTCCAATCTC
ACTTCCAGTGGAATCTATCTGAACGCCGTCCAGGAATTTGGCAACATCGT
ATTCCAAAACAACGTCACTTTCAATGACCAAATATCGCTTGGTGAAACAC
TCAACAACGTCACAATCGATGATTTGGTATTCACAGATCAAACAACTGTC
TTTCATCATCCAATCACATTCAAGCAAAATATCACATGTTCTGATCACGT
GACCGTGGATGGAAAAATCAACAACCTCAATATTACTGAAGAACATCAAA
CTCTCCCAATCCGATCTCAATACCGTCACTATGGTGAACAACTTACAAGT
CCAGAAGACAAACCAAAGAAACATCTTGGCAGTTCTTCAAAACAGAATCA
AATCCTCGGTCACATATTCAACTGAACAAACGATTACTGGATtgaacaaa
tttcaaaatgatgTCTATTTCAAGACATTGACTATAAATGGAAATGTATC
CGTTGGCAATCTAACCAATGGAAAGGACCTCTCTAACGTTTCCAGAGATG
CAATCTACATTAACAAGGATGAAGTGTTCGAATCCCAAATAACCTTCACT
AGCAATATCACATTTGATTCCATCTCTGTCCAACACATCAACAATATTTC
GACAACCAAGCTTCGATCAATCAACAAAGCATCCAACATCTCTGGACAAC
AGACTTTCCAAGACTTCCAGACATCATCAGCCACTCAAAACAACATTCAA
GTCAATGGCTTAGTTGATGGTGTGGATACTTCAAAGCTAGTGCTATTGGA
TACAGATCAAAACATTACTGCATTGCATCAATTTACAAACAAGACCACAA
TGCAACAGGATTTCCATATCCAGGGCCTGGTCAACAATATGGACATTTCT
ACTATTGCTTCAGACACCTTAAAGAAGAATAAAGAAGACACAGTCACTGC
ATATCAACGATTCTCCAGCATAGAAATCAAGGGAGATTTGAACATGGCGG
ACAAGAAGACAATTAATGATGTGGATGTCTCCAATCTCACTTCCAGTGGA
ATCTATCTGAACGCCGTCCAGGAATTTGGCAACATCGTATTCCAAAACAA
CGTCACTTTCAATGACCAAATATCGCTTGGTGAAACACTCAACAACGTCA
CAATCGATGATTTGGTATTCACAGATCAAACAACTGTCTTTCATCATCCA
ATCACATTCAAGCAAAATATCACATGTTCTGATCACGTGACCGTGGATGG
AAAAATCAACAACCTCAATATTACTGAAGACATCATGGACGTTTCATCCA
ACCAAACCATTACTGGCAACACCATTTTCACCAAGAATCTCCAAATGTCA
AACAATCTTCAGGTCCATGATCATCTTGATGGAATTGACATCAATGCATT
TATCAAGAACGTTATGACTTACAATACAACTCAAAACGTAACTGCAACAA
AATTCTTCAGTAACTTGACCACAGATTCGATATGGTTCAACAACTGTACA
GACCAACAATGTACCTGGTTAAACATCTTATTGAAACTTAAGGAAGAATC
AATCCATAAAACCAACGGACAGATATCTGTTAATGGAACTAAATCCTTCT
CAGATGTTTTAATCCGTGGTAATCTCACTCTTAATGGTTTATTAGATGGT
TTAGAATTCCCTGGTGATTTCTTGCAGCGATCCATTGATGAAGTGATCAA
TGGTACCTACACTTTCAACAACGTCACATTCGTCAAAAATATCACCGCTG
ATACGCTAAATGGTTACAATCTAACTGAACTCTACGAACGTGTTTTGAGG
AAGGTTGGCCATGAACAAATCGTCATCGCCAATTGGTCTTTCAATGATCA
CACTCACTTTGATGAACTTCAAGTTGATGGGTTGGTTGACGGAGTAAATC
TATCACGTGATGCACTTTTAGCCAATCAGGATCATGTAATTTCTGGGGAA
AAGACTTTCCAAACGGTACCCACGCTAAACGTCTACTGGTGCATAACATG
ACAGTCAGTGGTCTGATTGATGGCGTCAATTTGACTCAATTGAATGAAGA
ACTGGTGACAACATTAGCAGATGACATCATTATCAAAGGGAAGAAGGTTT
TCCAAAACCACGTGTCGTTTGGCGGTAATTTAACGGTGGGATTGATCGAC
GGTGTcaacatttcaaaattgaatGATCAAGCTATGAAGCTGGATGAGGA
TCAAATTGTCACTGGAAAGAAGAAGACATCATGGACGTTTCATCCAACCA
AACCATTACTGGCAACACCATTTTCACCAAGAATCTCCAAATGTCAAACA
ATCTTCAGGTCCATGATCATCTTGATGGAATTGACATCAATGCATTTATC
AAGAACGTTATGACTTACAATACAACTCAAAACGTAACTGCAACAAAATT
CTTCAGTAACTTGACCACAGATTCGATATGGTTCAACAACTGTACAGACC
AACAATGTACCTGGTTAAACATCTTATTGAAACTTAAGGAAGAATCAATC
CATAAAACCAACGGACAGATATCTGTTAATGGAACTAAATCCTTCTCAGA
TGTTTTAATCCGTGGTAATCTCACTCTTAATGGTTTATTAGATGGTTTAG
AATTCCCTGGTGATTTCTTGCAGCGATCCATTGATGAAGTGATCAATGGT
ACCTACACTTTCAACAACGTCACATTCGTCAAAAATATCACCGCTGATAC
GCTAAATGGTTACAATCTAACTGAACTCTACGAACGTGTTTTGAGGAAGG
TTGGCCATGAACAAATCGTCATCGCCAATTGGTCTTTCAATGATCACACT
CACTTTGATGAACTTCAAGTTGATGGGTTGGTTGACGGAGTAAATCTATC
ACGTGATGCACTTTTAGCCAATCAGGATCATGTAATTTCTGGGGAAAAGA
CTTTCCAAACGGTACCCACGCTAAACGTCTACTGGTGCATAACATGACAG
TCAGTGGTCTGATTGATGGCGTCAATTTGACTCAATTGAATGAAGAACTG
GTGACAACATTAGCAGATGACATCATTATCAAAGGGAAGAAGGTTTTCCA
AAACCACGTGTCGTTTGGCGGTAATTTAACGGTGGGATTGATCGACGGTG
TcaacatttcaaaattgaatGATCAAGCTATGAAGCTGGATGAGGATCAA
ATTGTCACTGGAAAGAAGattttccaagagAAGATTGAAGTCTCGATGGA
GAATCTCAAAGTTGGTGGTTTGATCAATGGAATCAATTTGACCGAACTTC
TACAACAATCCATCAACAAGAACGAGCCTTCAGTTGTGATTCGACAAAAC
TCGACTATCCAGAATCTAACAATCCGTGGTAACACATCCACCCATGCATT
GAATGGATTGAATTTGACCGACATTGTTGGATCAGCCTTGATGAAAGATG
GTGATCAAACTATCCATGGTGATGTCTACATAAATGAGCTTGTTATCAAT
GGCGATCTCAATATTACCAACCTTAACGGTCGTGACTTCTTGGAAGAAGT
GATTCAGCTTAGCAACCCAGGATCCATTTCATCTCACCAATTCTTCCAAG
ACGGTATCACAACACAGCAGTTGGTCACACAACTACTCAATGGTCAAAAT
CTAACAGAGTTTTTCAACAGTATTGTCTTCATCGATCAAAACGCAACTAT
TACCGGCAAGAAGATTTTCACTTCAGAACTTCGCGTTGATCATCTGATTG
CTCATAGTTTAATCAACTCCAAGAATCTGACAGAGCTGATGGCAACGACC
CTATTGAAGCAAGGCAACCAATCAATCCACATACCAACTACATTCAGTCA
CGTGATTCTACAACAGGATTCTGATCTCATTTCGCTTAATCAACATTCAA
ACGTATcaacattcgaaaaagaaatcttgTACAAATGCGAAGGACCTAAA
AGACACGTGGTCGGTAACCATGTATACCAGAAAGCAGAATTCGGACAAAG
ATCGACTATCGGACACGTCAAGGCTCAAGGATTAGTCAATGGATTAAATA
TTTCATCCCTGGAGAAAGAAGTGGTCACTAAAACTGGAAACCACAGTATC
GTTGGTAAGAAGACCATGAAAattttccaagagAAGATTGAAGTCTCGAT
GGAGAATCTCAAAGTTGGTGGTTTGATCAATGGAATCAATTTGACCGAAC
TTCTACAACAATCCATCAACAAGAACGAGCCTTCAGTTGTGATTCGACAA
AACTCGACTATCCAGAATCTAACAATCCGTGGTAACACATCCACCCATGC
ATTGAATGGATTGAATTTGACCGACATTGTTGGATCAGCCTTGATGAAAG
ATGGTGATCAAACTATCCATGGTGATGTCTACATAAATGAGCTTGTTATC
AATGGCGATCTCAATATTACCAACCTTAACGGTCGTGACTTCTTGGAAGA
AGTGATTCAGCTTAGCAACCCAGGATCCATTTCATCTCACCAATTCTTCC
AAGACGGTATCACAACACAGCAGTTGGTCACACAACTACTCAATGGTCAA
AATCTAACAGAGTTTTTCAACAGTATTGTCTTCATCGATCAAAACGCAAC
TATTACCGGCAAGAAGATTTTCACTTCAGAACTTCGCGTTGATCATCTGA
TTGCTCATAGTTTAATCAACTCCAAGAATCTGACAGAGCTGATGGCAACG
ACCCTATTGAAGCAAGGCAACCAATCAATCCACATACCAACTACATTCAG
TCACGTGATTCTACAACAGGATTCTGATCTCATTTCGCTTAATCAACATT
CAAACGTATcaacattcgaaaaagaaatcttgTACAAATGCGAAGGACCT
AAAAGACACGTGGTCGGTAACCATGTATACCAGAAAGCAGAATTCGGACA
AAGATCGACTATCGGACACGTCAAGGCTCAAGGATTAGTCAATGGATTAA
ATATTTCATCCCTGGAGAAAGAAGTGGTCACTAAAACTGGAAACCACAGT
ATCGTTGGTAAGAAGACCATGAAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_002302XLOC_002302-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295_pilongenomesc0000295_pilon:400645..404105 +
Properties
Property NameValue
Aaloc1948-2850:2559
Aaloc1687-1947:1978
Aaloc1003-1683:1295
Aaloc13-999:1