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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000078_pilon:1129842..1134968+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_001309 ID=XLOC_001309|Name=XLOC_001309|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5127bp|location=Sequence derived from alignment at sc0000078_pilon:1129842..1134968+ (Clytia hemisphaerica_ch_hm2_pilon)
gctATAGATAAAGTTGGAGGTACCCAACAAGAAGCACAAATAGAGGCGTC
ACCTACGaaaaagaggaagaccaaaaaagacaaagaaaaatcacttgAGA
TAACAGAGATTGATGAAACACAAGAAGATGCAGGTAATTTTGATTATTGT
TCTTCATCAGATCTATTGTCTCTTTTTTATTATGCCCCTTTAAAGTGTGA
AAAGACTGGGTTAGTTTACAATGCAGGATTGAAATCAAATGTTTGAAGTT
GTTGCATTTATTTTCGCATTGAAACATAATTGTTCCTTTCTAATAAAAAC
GCGACCAAATTCcttcttattttttattgtaatgAGTTATTTAGTCAGAA
CAATGACAACAAAGTTTCTCAATACCCTGATAAAATTGTCATTGTTGCCT
GATAATAATATTGTTCATTTAGAAAAGGAAACACAGGATTCTCCAACaaa
aaagaggaagaacaaaaaaaacaaagaaaatgtaacTGAGATAACTGAGG
CTGAAGAAATGAATGATACAGGTAGAAAACTAGATTTGTCCATTGTTTTT
TGCTTTTGTTGCGCAAGGTCAACAGACCCAAAGCCTTTTCAAATTCGGAG
CAACTAAAATCACTCCCTAGTCAAGGTACCcttaaataaacaaaatgtaA
CTGAGGCTgaagaaatgaatgaatgataCAGGTAGAAAACTAGATTTGTC
CATTGTTTTTTGCTTTTGTTGCGCAAGGTCAACAGACCCAAAGCCTTTTC
AAATTCAGGAGCAACTAAAATCACTCCCTAGTCAAGGTACCCTTAAATAA
actaagtttttttcaaaacctgaaTAAAGGAGAACAAAGCTGGCAAAAAA
GGTTAGGTGCTTAGCCTGTATAAAGATAAAAGAATAAAGTGAATTTTTAA
ATGCCATTTTGTCACTTCGAATTTTCGAATATTATTTAATTTCAACTAAG
GAAAGGTtgttattctcatttttttaaacagGATAGCACTGGACTTGGCA
GCCCTAGGTCCTAACTTACCAGTACAGAACTGTAACAAAATCTCGCGTGG
TACCACTTTAGACTCTATTTCTTTTAACCAGGAAAGAATATCAATGAATC
ACCAGTgaaaaagagcaggaaaaccagaaaagcaaaagaaaaatcacCGG
AGTTTGTTCAAGATGATGATATTCAAGAAGATACATTAGGTATGGGgctg
tccacatagtacgtacgcactaaagggggaggggggtcttctcaaaagtg
TATGAAAAGCGagttaaagaaaaatgtatgtacgcattgtaaagaaaaat
ttttgtttttttgtcgacttttacacTTCTTATCTgttcttatacgcatc
aaggaatagaaaaagtttcttaataaacaacaagtttcatgtatgaaatg
aAGATCcaaaccaaacgatttgaatttaaaatgttcttcaaccgaGgggg
gcggggggggggggggggagttatGAAAAAGTACGTTTTTTACcaggggt
atagccatttgcgtacaaGGGGTACCCCctgtactcgattttcgacattt
tagtgcgtacatACAATGTGGAAGGCCCCTATGCAATATTTAATAAGATC
CTTATCCAAAGAATCTGACTGTAACTATTTTCTGTTGTATGGCTGGCAAC
GGATCAAGTTAACACCTGCCAAGTAAAATTCAAAACTGCGTAAGGCCTAC
CCTCTGcgtttgtctgttaccagcttttttttggtattggttctttgtta
gtttttttgcacaaagatatgGAAAAATTGGTAATAACTGAgctccattt
tcaaaaaaaagttttttgcttgccaaaaaatgtcaaaatatgcGGAAGTT
cgttattttagattttcaaagattttttttttaatcaattctACCATCCT
AGAAATTGGAGGGAGCAGCCAATTGTCGCCACTATAATGATTTTTCTTGA
TATTCTCTGTACTCATTGAATTTACCGATTTTTTCTTCCTTAATCTTCAT
TTAGCATGgtttaattttcataaaaaaattattttcaatcactTGATGTA
CAGCCAGTAAAATTTATTTGAGCCTTCTTTCTCCTTTTTCTCTTCGTCTT
TTTGACATCAGGTcttcatcaggtaggtccaatcaaCATCCAtccattat
tattattttcagaagaaaagtcaccagtgaaaaaaggcaagaaaggaaga
aaaacaaaagagaaatcACTTGAGTTTGTTGAAGATGACAAACCAGACGA
ACATACAGGTATAAGCATGACATATTGTGCACTGAAAAAGCAGCAATTAT
AATAGCATGCCATATTTCGGAAAGGATTAAATTAGGACTgtcattttttc
ttctgttattttattCTGTTGTCAactcagcgttttgattggtcgagagc
atcgagatatttgtgATATTTAATATTTCACATGTGCAAGATATGACTAC
GTTGACTTTCGGGGGCTGTGTGAGCGgtgggagaaaaatcaaaacaaaac
agccgaaaagaactgactaaagaaaaaataaagatcagcaaaaagaTTAT
TTGCAGATTAATTTTTTACTTTGGATTTCTTCCATTAGAGACactaaaat
ggggggggggtttgtaggggttcgaaataccgttttcccgtcaaaatttt
tgctgaatcccggaatcccgaaaattgaaaaaataataacaccgtcacac
cagCTTGTACAGGgaaaaaatgtacctaaataccgtcagcttctgatttt
aaaataccgttttcccgtctcttttttcgtcaaatcccgtataataccgt
actaaaaaagggccaatcccgtcacaccgtaaaagtacaaacccccctct
aaaatcaaatctaatgaaatgtatcagtaaaaaattaaataaaagtagaa
tttcatctaaaaaatctcctaaaaagacagcaaaaatttagatttttgaa
atttcagggtcggtcgggcccataaaacaaactaattaaattggtcttgc
cTAATAATACTTTCATTTAATATTATTTAAGAGCCACAAATTACAGAAGA
ATCGTCAGTGAAAAAGAGCCGGAACAAtaaaaacagtaaagaaaaaaaat
cagatgCTGTAACAAGTGAAGACATAGCAGGTAAAGCACTGTTCTTTGTA
ATACTTCTTTATAATGGCTTTGTTGTCAGTCAACATAGATTCGACATGGA
AGTGTGAGGGTATGCAGTCTAATATCAAAGAAACGAAAATGGAACATAAT
CTACATACAAAAGATTTTCTACTAAACTATAGGTTATCTGTTACGCTCCT
CTTGACATACCAAAAATTATGTTCACAATTTAAATCTTTTTAGAAGAAGA
GCTACAAATAAAGGAATCCCctgtgaagaagaagaaaaggaaatcACCTA
GACAGGACAAAGAACAAATATCAGAGATCACTGAGGATGATGCCAATGAC
AAAGAAataggttttgtttttttatatttataaaaggGTTTAGGTTTAGT
TTCAATATCGGAATCAGAAGACGACCTATGATGGTCTCATCTTCTTAAAT
TCCTCCTTAAGATAGAGGGGACTTGAACGATGTTGATTAGAATTACCCTA
TAAGAATAGATGTCAAAGATGGGTTAAAGGGaaattaaagtagtaaaatg
taaacattgcgcgaaccacgtgtcattaaagagaacaattgaaatcacgt
gtccaaaacaaacttgtaaaacaattgaacaatcaaaataattagccata
tttggtttgattttgtatccgctgcatacagtttgtttacaaatttcgca
agtactgttatgtccctttaatatgGTGAAGGTTTTGCCAGTGATATGGT
GTCTTTTTCAATCTCCGATTGGGTCATTAAATCATCaagtttcgatattt
ttataagaaaggttATTCACTCGCAAGGGGACGGGTGTAGTTTAAAATTT
ATTGTACAAAAAAGTTAATCCTACCATGGTCTTTTTTGATTCGATCGATA
TTGATCAAAACGAACCAGGGagaaagagtaaaaaaaactttcaaaaaacc
tAAAGAAACATCGCCTGGAATTTATGAAGCTGAACAATCAAATGGTATtg
aatttgattgattgatatgaATATTAATTTTTAGCTTCAGTTGAACTATA
TAAGGGAACAAAATTATGCGGAATGAAAATTTGGTGGAAATAccaccaaa
attaaattcccgccaaatttaaaatatttttttcccgaATGAGTATTATT
tcagtctttaaaaaaaacgttctttctcatttaaaaaaaaagcgccaaaa
atatccttcatCTGCCAAAGGAAATTCCCAACGAAAATAATGTTTTCGGC
CATccaacaaattaaattcctgctcAAATTTCTTCCTTGAGTTAGAATCT
AAAAGTGACAGTTTCTAATGACTAATATGGTTTGCCATTACATTATTCTT
TAACTCTTTCAGAGGATGAACCAATAGAAACTAAAGTTGAATTGAATAAT
TCACCACCAACAGACTCTGAAGATGAAGCTCCCGAGGGGATTTCTTTAAA
AGACAGTCGTAAGAAAGCTATACAAATTCAACAAGACATCTCTGAtgcta
aaaaattgaaaaaatcacatcaaaaacaagtggtccaagatcgccaaaag
aaaaatcGTCAACAGCAAGAAAAGTCTAAGAAGAAAAGCCATCAGTTACC
GGATAAGATTTCAGAGGATGTTTTGAAATTAGTACAGCAAGAGGCTGAAG
AGGAGCAAAATTCAGATTCTGAAATGGATATAGATGAACTGTTAAACCAA
ATAGGTCAAGAGAAACCTGCATTTAAAACACAacctaaaaatcagaaaat
tactTTTGAAGATGACGATGATCCTGGTTTTGATGAACAATTTCTTGATG
AAGAGAGTGAGGATGACTTAGAATCAGGTTTACAAGCACCAATAACAGCA
CAGCATTTGTATTCCGTAGATAAGGTCAAAGGCATTGGTACTGATGCAAG
AGAGTTTCTACAGCAACACTTTTTCGGTAAAAGACTCAAACGAGAAAAGA
GATTaaaatccaatttcaaacaaaaagttgggtcgaaaaagtctaaacaa
attggtaaaaggaaaaagATTATATGA Coding sequence (CDS) from alignment at sc0000078_pilon:1129842..1134968+ >XLOC_001309 ID=XLOC_001309|Name=XLOC_001309|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2634bp|location=Sequence derived from alignment at sc0000078_pilon:1129842..1134968+ (Clytia hemisphaerica_ch_hm2_pilon)
gctATAGATAAAGTTGGAGGTACCCAACAAGAAGCACAAATAGAGGCGTC
ACCTACGaaaaagaggaagaccaaaaaagacaaagaaaaatcacttgAGA
TAACAGAGATTGATGAAACACAAGAAGATGCAGgctATAGATAAAGTTGG
AGGTACCCAACAAGAAGCACAAATAGAGGCGTCACCTACGaaaaagagga
agaccaaaaaagacaaagaaaaatcacttgAGATAACAGAGATTGATGAA
ACACAAGAAGATGCAGAAAAGGAAACACAGGATTCTCCAACaaaaaagag
gaagaacaaaaaaaacaaagaaaatgtaacTGAGATAACTGAGGCTGAAG
AAATGAATGATACAGAAAAGGAAACACAGGATTCTCCAACaaaaaagagg
aagaacaaaaaaaacaaagaaaatgtaacTGAGATAACTGAGGCTGAAGA
AATGAATGATACAGGAAAGAATATCAATGAATCACCAGTgaaaaagagca
ggaaaaccagaaaagcaaaagaaaaatcacCGGAGTTTGTTCAAGATGAT
GATATTCAAGAAGATACATTAGGAAAGAATATCAATGAATCACCAGTgaa
aaagagcaggaaaaccagaaaagcaaaagaaaaatcacCGGAGTTTGTTC
AAGATGATGATATTCAAGAAGATACATTAGaagaaaagtcaccagtgaaa
aaaggcaagaaaggaagaaaaacaaaagagaaatcACTTGAGTTTGTTGA
AGATGACAAACCAGACGAACATACAGaagaaaagtcaccagtgaaaaaag
gcaagaaaggaagaaaaacaaaagagaaatcACTTGAGTTTGTTGAAGAT
GACAAACCAGACGAACATACAGAGCCACAAATTACAGAAGAATCGTCAGT
GAAAAAGAGCCGGAACAAtaaaaacagtaaagaaaaaaaatcagatgCTG
TAACAAGTGAAGACATAGCAGAGCCACAAATTACAGAAGAATCGTCAGTG
AAAAAGAGCCGGAACAAtaaaaacagtaaagaaaaaaaatcagatgCTGT
AACAAGTGAAGACATAGCAGAAGAAGAGCTACAAATAAAGGAATCCCctg
tgaagaagaagaaaaggaaatcACCTAGACAGGACAAAGAACAAATATCA
GAGATCACTGAGGATGATGCCAATGACAAAGAAatagAAGAAGAGCTACA
AATAAAGGAATCCCctgtgaagaagaagaaaaggaaatcACCTAGACAGG
ACAAAGAACAAATATCAGAGATCACTGAGGATGATGCCAATGACAAAGAA
atagAGGATGAACCAATAGAAACTAAAGTTGAATTGAATAATTCACCACC
AACAGACTCTGAAGATGAAGCTCCCGAGGGGATTTCTTTAAAAGACAGTC
GTAAGAAAGCTATACAAATTCAACAAGACATCTCTGAtgctaaaaaattg
aaaaaatcacatcaaaaacaagtggtccaagatcgccaaaagaaaaatcG
TCAACAGCAAGAAAAGTCTAAGAAGAAAAGCCATCAGTTACCGGATAAGA
TTTCAGAGGATGTTTTGAAATTAGTACAGCAAGAGGCTGAAGAGGAGCAA
AATTCAGATTCTGAAATGGATATAGATGAACTGTTAAACCAAATAGGTCA
AGAGAAACCTGCATTTAAAACACAacctaaaaatcagaaaattactTTTG
AAGATGACGATGATCCTGGTTTTGATGAACAATTTCTTGATGAAGAGAGT
GAGGATGACTTAGAATCAGGTTTACAAGCACCAATAACAGCACAGCATTT
GTATTCCGTAGATAAGGTCAAAGGCATTGGTACTGATGCAAGAGAGTTTC
TACAGCAACACTTTTTCGGTAAAAGACTCAAACGAGAAAAGAGATTaaaa
tccaatttcaaacaaaaagttgggtcgaaaaagtctaaacaaattggtaa
aaggaaaaagATTATATGAAGGATGAACCAATAGAAACTAAAGTTGAATT
GAATAATTCACCACCAACAGACTCTGAAGATGAAGCTCCCGAGGGGATTT
CTTTAAAAGACAGTCGTAAGAAAGCTATACAAATTCAACAAGACATCTCT
GAtgctaaaaaattgaaaaaatcacatcaaaaacaagtggtccaagatcg
ccaaaagaaaaatcGTCAACAGCAAGAAAAGTCTAAGAAGAAAAGCCATC
AGTTACCGGATAAGATTTCAGAGGATGTTTTGAAATTAGTACAGCAAGAG
GCTGAAGAGGAGCAAAATTCAGATTCTGAAATGGATATAGATGAACTGTT
AAACCAAATAGGTCAAGAGAAACCTGCATTTAAAACACAacctaaaaatc
agaaaattactTTTGAAGATGACGATGATCCTGGTTTTGATGAACAATTT
CTTGATGAAGAGAGTGAGGATGACTTAGAATCAGGTTTACAAGCACCAAT
AACAGCACAGCATTTGTATTCCGTAGATAAGGTCAAAGGCATTGGTACTG
ATGCAAGAGAGTTTCTACAGCAACACTTTTTCGGTAAAAGACTCAAACGA
GAAAAGAGATTaaaatccaatttcaaacaaaaagttgggtcgaaaaagtc
taaacaaattggtaaaaggaaaaagATTATATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078_pilon | genome | sc0000078_pilon:1129842..1134968 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1090-1752:4465 |
| Aaloc | 973-1086:3346 |
| Aaloc | 874-969:3034 |
| Aaloc | 778-870:2165 |
| Aaloc | 670-774:1084 |
| Aaloc | 640-666:494 |
| Aaloc | 580-639:425 |
| Aaloc | 445-576:1 |
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