XLOC_000325 (mRNA) -

Overview
NameXLOC_000325
Unique NameXLOC_000325
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000135_pilon:384335..392956+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000325 ID=XLOC_000325|Name=XLOC_000325|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8622bp|location=Sequence derived from alignment at sc0000135_pilon:384335..392956+ (Clytia hemisphaerica_ch_hm2_pilon)
TTTAgtacaaaaataacaatatacagaaataaaaaaataaaagaaataat ggaaaGTTGGGAGGAAATCGAACAAGCTGCAGATGATGGGCGCCATGAGC TGCATTTAAATGGTGACGTCATCTCAAGCAAACTGGAacgaaacgagatg aaattacCTAACAAACTTTTTGAGCTCGTTGCGTTGAATTATTTGGAGAT TTCAGATACTTCTCTTATTGAGATCCCTGATGATATGGCGAAATTAACAA ATCTTATCAATTTGGCTTTACATAGGAACAGTATTGAAAAAGTTGGAGAT TTCTTTAATCATTTACCGAAGCTGAAATTCTTTGATATGTCTTTTAACAA ATTGACAAGTCTACCAGAGCAATTAAATTTAGGTACTGTACACACGTTGA ATTTATCTAATAACGAGTTGGCGTCTTTAGGTGATCTAAGTGGGGCTGTT AATCTTAGTATTTTACACATAGAACACAATGAGCTAGAAGAATTACCTAC AGGGTTAGTCACCTTAAAACATCTATTAGAAGTGCACGCCAGCAATAACC TAATAAACACCTTACCTGACGATCTACACACTTTTCCCGCGCTGAAATTA TTTGACGTCTCCGAAAACAAGTTGAAAGAAGTACCACACTCAATGTCTCA ATGCCAACGTTTGAAGACGCTCAAACTTGAAGGGAACCCCCTGAAAGATA ATCGATTACGTAAGATGACAACACAGTGCAATACTAGAGCTATACTGGAA TACATTGCCAAGCAGAGTGGTGGAGACGGGGGTaagaagggcaaaaaagg aaagaaagggaagaatcaaccggttaaggaagaagcagaagagaaCGTCA GACGTATCGTGATCACTCCGAACACGGATGATGAGAAGCGTGTCATATGT GACGCCTCCGTGAAAGACGTACGCCCGTATTTGTGTTGCACCGTCATAAA GAATCTTGACCTGTCGGATGAAACTGTCTTCAAAAACTTCTTATCCCTAC AAGTAtgaattttatttacttttatcccttcctatttttcttctttaaag aATATAGCtgcatgcttttgaaaattagattttaaaaacTCGAAGCCAAT TGCGAGATTAATGCTTATTTCGGtgagttttttttaaactttcataaTTA ACCAATTAGCTTTCTCCGGAGATAGCTGTCACCAAAATTCCCCTAACGTT TACCTAATTCAATATTGGAGCTATTAGGTTTCGTAAAAGTGGTAACTGGA GTGATCGTGATCTGCGGATAAATCTCAGATCTTCAAACTGGAGCTTACTT AATACAACATTTTATCGCAAAGTCATTTGGTTCATTTGACGTTATTAGac aggtacgagccgggaagtatcttatccatttggtggactaactttcttgg ggtttttcttgttccttatgtTAATAAGAAtgttttaagcttctgggcca cctggatttctcacctgggtatccataatggcggatttttggtcatgtga cccccgtaggcaaaactgaaaattcttccaacccgaatataggcatatca tatatcaatcgatcggaaattcgatactgattaattttgagatacaaagt tgaGTCTGAAAACTTTTctatctcgagatataaatcactttcgttttctc aggtttggctgcagttgtaggcgggctttcatggagtgaggcaattcttt tactcatatctcaagaaatatgcttttaaacatatcaaaactttatgtgc tcctagaaaaggcattaaaaattgtttgtgcaaattttcaataagtttgc agtaaaaatgtgtattttacagaccagagtacaatttccttaccgttgaa aaaagatctttttctctcaTAATTagcctttttgtctgaaatgaatgagt GAAATGTTTCCCAATAGGGTTTAAAACCAATCACTTATTCGTAATCTCAC TCAGAGGGGTACTTAGCAACAAGTAAGGGCTAAATGTATCcggtcagcac tttataagtACCTATGATTTACGGTAAGACATGATCCCAAAAacggtgaa atttccaaataattaatgaaaaattctctCATTGCATCTCAACATTAAAC GAGAACCTTCTGTTCTTTAGATTGACTAATGCAAAGAATTATGAATAATG TAAATCGTTACAGTGTGTatttttacagaccagatttaagTGCTTCTAGG AGCTTGTCTTGTTCTAAAACGCTTTGGATTACTACAGAAATTCGCGAACT TGAGAATTTACTGAGTTAATCCGTCAAAATTCGCCAATTCCTTTATCTTT ATTGTTCATGCATGAAACGAGATTTAGAGGGCTTAGAATCTGTGTTGTCT GTAGGGCCAAAAAATGTCGGCCTAATATGGCTTCGAGAGGCGATAATCCT AGGCCATTGTAGGAAGCCTAGTGATGGAGCCATTTTTGTGAACCTGCTTG GGGCTATTCTGGTTACTGTTACAATTATAAGAGGCGTATAATGGTCCAAT GCATCATTGTATATCCGCTTTAACTACATGAATGCAACACAACGCCTTCA GCTAGTTGAATAAGTCAGACTGTgggaattttaactaaaagcaCTTTAAA GAAGTTATTGCCATACAAAATAATGCTTTAAGCTACATGTCCAAAATATC CccgttttcttacaaaaatcttaGTATAATATTAAGCaatcttgatttta aaattcttatttgtttCGGACATGGCTTGCTGATGACGGTGATCCCATTT TCCTTTCCCCTCATGAGGTTTTGTCAGAACATGAACAAACGACGGGACAT CCTTCTCCTTCGTaagcactgctagcttcgttgccgcctcgttaaaacat aaaatgaaacaataggttTTGATGATCtaccttgggaataccttgctaac aacgtcaaaacttacacaaagtctctgttgttctactcttctccagtctt ttatctatatcataacaaagataacagatgcGAAATCATCGTCATTTTTC TAAACTCCGATGAAATAATATCGAGTATATAGGATTGAGAGCAtaggatt caaattatgatattcttatgacacaggctcacAACTTTGGCatacctttt ttttttcaagtcaataaaaaaactaattggaatgacaaaagtgattcaaa agtatacacacagttgaaattctccatttcagcgtataaaaaaaattgaa aataattattttgtgacTTGAGAgaaactagccgtatgcgcagcgtcgca cgctgcaTGTCCCAATCCAGCAAATCACATCTaaaaaaaaCCCAACGGAA AAAGGATTGCTGCTGATTGatgataagattttgattttataaaagaaagg agaaaaaagttcaacgccatgaagaggaggctttgtagagctttgttaga ttttcgaaaactttttataaaacgttgtaaacacacacgttttagcatat taatatatagattttcaaactatcaagctatctatcaatcattttaccta agtaattcaaagaaatagcaTTGTGATGGAATATCAacggattttttata ccaattttaaaatacaggcGGCTACAAAGACACCatggaagatagacgtc cagttatGATTTATCCCATGTGAAGGTGCAGTAGTGTACCAAGTATTGAC CGTCGTCTAGGAGATCAGGACTAACTCCAACTCGGTGCTGTGTTTCactt aatgaaaagtaaatgctACTTTGCTAGgaccaacccataccatgtgatgg TCGTAGGGTGGACAGAAGTCTCAAAGACAGGCTACACAGATTTCTCGTTA CatgcatgaataataaagatataggaaTTAGAGGATCTTGACGGATTTTA CTCAGTAAGATTCTCCAGCTCCGGATTTTCCATGGTAAGTCTAAACATTT TAGGGTAATATAACCACCTAGAAGCacttaattctggtctgtaaaataca cacagcGATTTACATGTATTCTTGATTCTTTGCATGTGTCAAACTAAAGA ATAAGGTTCAACTTTGTTTAATGTCGAGATACAATGAGAGACTTTGTCAA ATATTTGAGTAATAGCTTGGAAGTTTCACCGTTTTTTGGatcaaatctta ccaaaaaaaCATACTGATAAAGTGCTGACCAGACACATTTAGCCCTTATA TATTTCCCAGGTACCTCTCGAATATAATATGAAGAATCGAGTGGCTCTAA ACCTTATTAAGCATcattttactaattcatttcagacaaaaaggccaatt ttgagtagtctagcaagctagaagactaattcagatatagtagaaataaa acaaaaagtaatggagggaacaaattttagtcgtctagaaacctttgtgc aagCCAAAAGCTTCATATTAATATTGCTTTGCTAttgttaatgaaaaaaa aatctagggGGCTTGTTCGGaaaaaaacggtttgttttgatttcgtaaAT CGATTTAATTGGTTTAGAAAAAACAATCGAGACGCACACCATTGGTCGAA ATACATAAAAAGAGAAATCAGAACACACAACAATTTTCTTtctcgaaaaa tttttctcgtTTGTTTTaaactaactccaaacaaaagaaaagtgtcatgt caatattgcaattataatttttcttcccgctcaaaaaaaattttctttaa aaaaaaagtgtgttgatttgttgtgtgttaaattttattttatttttcgt ctttcattttgttttgagagtttgttgttgcttgatcaaaaattaatttc tccTTACCTTTCGCGCGCCAAATTCTTACGGAAGCACCCCTGTCCGAGAA aagctttcttttgttttcagaaaaaaccctttgttttctcgctacgcaag tttctgcgtagctagccggggattctataaggccggaacaccggattctt ccagtcgtttatacaaactaatattatcccgtaacaattatcgtattatc atataacgcctatactactgtattacacgcattataaacgactccagtct aaattttgagaaaaaaagatcttttttcgacggtaaggaaattgtactct ggtctgtaaaatacacatttttacttcaaaatttttgaaaatttgcacaa acaatttttagtgCCTTTTCTAAgagcacataaagttttgatatgtttaa aagcatatttcttgagatatgactaaaagaattgcctcactccatgaaag cccgcctacaactgcagccaaacctgagaaaacgaaagtgatttatatct cgagataggaaagatttcagacccaactttgtatctcaaaattaatcagt atcaaatttccgatcgattgatatatgatatgcctatattcgggttggaa gaattttcagttttgcctacgggggtcacatgaccaaaaatccgccatta tggatacccaggtgagaaatccaggtggcccagaagctcaaaatattctt tttaccataaagaacaagaaaaaccccaagaaagttagtccaccaaatgg ataagatacttcccggctcgtacctgtCTATATTCACTGGGTCCGTGCTA ATTATCAGTGTACCTCAaggcagtgccgtagcaactgggggggcaagggg ggggctatgcccccccaataattttttcaaaaatggttattttgcaaaat gcaaagtttttcttttttaatttgtcataattgtccttatgtgcatgttt tgagtgtatttttaagcaatctagagctcaaattttcaaaatttcccccc tcgggccaaaccatggttggcccttgcggtgtcactaaacttcagccccc ccaatatgaaaatgcttcctacggcactgcctcaaggaaactaattttag cgggaactaaatttcgcggtcgaaaaaaaatatggaAGAAATGACtttgg aattaattttcgcggttttgccctattttggagattattttttattttcc gagcgtttttcaaatttttcgatggaaaatggtcgAATTTACGGAAATTA GTTCTtgcgaaaatttgttcccttaaggtaactgAAAGTTTGACAAAAGT GATGCTAAAATCAGGTTTAAATTATATTTCTCTTTCTTTACAGACGAAAC TTCACGAGAATGAATGTGACATGCGCACACGTGCTACCATTGCAACCCAT AATGCAACAGGATTGAAATTCCCGCTTGTTTTCAAAGCTTCGCATGTGGG TCAGACTGTCATCCATGCATTAGGGAAAAAGAAACAATGCAATGCGACAA CATTGATACAGAATCTGAAAGATGAAAGAGATGCATTGAagcagaaaaag aaaagacaacCGAAAACTGGATTGTACAAGTAAGGGATATTCATTCTCTC GAGACCTATTTCATATAACAGATGCGAAAGGTTGCTTGACAtttttttGT GAAGTGTAACGGATGTTTGTTGATTTGAGGAGTGAGCGAAAAATATCGAA GAAATTCTCAAATACCTATTCATGACATTTGACAACCAATAGGGGGCTTA CCTGAATTTATCAACAAGGACTCGTTTAGCCTGattcgcagacctctaca aaaccgcagatAGTATAAGAGCACGAATCCGTCAggggatgccagcagcc taggatTTATGTTTTAGTAGATCTTTATGATCTAATGAAGTGGAGCGTAT AAAGGTAGAGCATTCgtctacggtgcgcaaggtcgcGGGTTCAATCCTCG GTCTGATCATAACCAAAGACTTCGTACACTGTACAAAATGGTACTTAAGG ACTCTCTGCTCCttactcagcaattaagagaaggagtATTAAGAGTGGAA CCCTACCTACCTTCGGATAAATAACTACCGAAAGATGAGTGCTCAGGTCG CTGCCGTCTGTGGTTGCAAGCCTTACTTATTATAGATCTCTAATCAATTT GTTTCACTTTCTTCTGAAGGTTTATTGAACTGGTGGATGGACAGGAGATG ATAGCTTCAGTTCGAAATCAAGATGGTGACGTCATTTCGTTGCCTCCGAT CACTAATGGTGAAAAAACcaaggtattttttttttccgatACTAGTATAG TACCTGTTTCAACTTGATAAAGGCAAACCGTCGAGACGTCGAATACAAAA CTGTGTGTTTTTAATGTTCACCTTTTCCTGCTTTAGATAGAGAGAGGAGA acctatttttttttctcgattcaGATTTTACCAAAATCTCAGTCAAAACT TCTGGAAAtcatttaaattgatttttcctAACTTCAAGATGTaaaaaaaG GTACACTTATGCCTCGTTACGCAGCGTCCTTCCCCTCAtgagtttttgga cctacttcggagttcgtccgtccgtctgttaccagcttttctctaGATTG GCTcatcagttttttctgatttttagcacaaggatgcaaaatggcaatgc ccaaaatgtgacggaacccgattttcgaaaaaaaaaactttccaccggaa aaactgttttttttgttttttttcgagattttattttttgctcaaagatg cgtattaacaatgccctaaacatggccgagtccgatttttgagaaaaatt tttttccggccgaaaatgccggaaatatgccggaaatcgctgtttttctg gattttcattggatttttttcttaaaattgcttgttttttcattcaaaaa cattattaatagcaatgcccaccatcaagcatgttttaattttcaaaaaa tttgatttttgaagccggaactattcaaaaatcgccggaacaacctattt tcgccggaaagacagtatttcttgaatttaatGAGCTGtgcttaatattt tttaattaaattttgcacactgatgcaaaatgacaatacctaaaatgtga cggagcctgattttcgaaaaacatttttttctggccgaaaatgccggaaa aaccggttttgtctgattttttgcagaaagatgcgtattcgcaatactaa aaacatgaccgagtttgttttttttgagaaaaattcttttccggctgaaa atgccggaaatatgctggtAATTACTGTTTTTGCAGATTGTCATTTGACT TTTCCctcattctttgttttttcacacaaaaacatttgcccaccattaag catgattaaattgtcaataaaactgatttttgcaactgGAACTTgctatt tctattttttccctactccccttccctcttcccccatcaacaatcaatta taaaattgaatgtgttatgcatttttgcaaaacgctatatcgtctgactg attgttttcatttttctccttattgctatctagctttcatcatcaggtag gtccattcagcatgttgcttgttgaaATATTTAGACTAGATTTCATAatt attccctttttttcttttccctaCAGATCGGTGCTTCAGTTGGTGATGTT TTCATTGAAATATCATCACCAGTCAGTATCGCACAATGCAAGTACGTTAT GGAAGAGTTGATCAAGAAAATGTTCCAACAGAATTTCAACTCTGACATGG AGGGTGATGAAGGGCTTTGGATTGAACCAATCAGAGTTgtggatgaaaat gaagatttgagAATAGTTTATCCCTCTAAAATTGATAtcgatttttcaaa tattccaGTCAAACGACTGTGA

Coding sequence (CDS) from alignment at sc0000135_pilon:384335..392956+

>XLOC_000325 ID=XLOC_000325|Name=XLOC_000325|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3174bp|location=Sequence derived from alignment at sc0000135_pilon:384335..392956+ (Clytia hemisphaerica_ch_hm2_pilon)
TTTAgtacaaaaataacaatatacagaaataaaaaaataaaagaaataat
ggaaaGTTGGGAGGAAATCGAACAAGCTGCAGATGATGGGCGCCATGAGC
TGCATTTAAATGGTGACGTCATCTCAAGCAAACTGGAacgaaacgagatg
aaattacCTAACAAACTTTTTGAGCTCGTTGCGTTGAATTATTTGGAGAT
TTCAGATACTTCTCTTATTGAGATCCCTGATGATATGGCGAAATTAACAA
ATCTTATCAATTTGGCTTTACATAGGAACAGTATTGAAAAAGTTGGAGAT
TTCTTTAATCATTTACCGAAGCTGAAATTCTTTGATATGTCTTTTAACAA
ATTGACAAGTCTACCAGAGCAATTAAATTTAGGTACTGTACACACGTTGA
ATTTATCTAATAACGAGTTGGCGTCTTTAGGTGATCTAAGTGGGGCTGTT
AATCTTAGTATTTTACACATAGAACACAATGAGCTAGAAGAATTACCTAC
AGGGTTAGTCACCTTAAAACATCTATTAGAAGTGCACGCCAGCAATAACC
TAATAAACACCTTACCTGACGATCTACACACTTTTCCCGCGCTGAAATTA
TTTGACGTCTCCGAAAACAAGTTGAAAGAAGTACCACACTCAATGTCTCA
ATGCCAACGTTTGAAGACGCTCAAACTTGAAGGGAACCCCCTGAAAGATA
ATCGATTACGTAAGATGACAACACAGTGCAATACTAGAGCTATACTGGAA
TACATTGCCAAGCAGAGTGGTGGAGACGGGGGTaagaagggcaaaaaagg
aaagaaagggaagaatcaaccggttaaggaagaagcagaagagaaCGTCA
GACGTATCGTGATCACTCCGAACACGGATGATGAGAAGCGTGTCATATGT
GACGCCTCCGTGAAAGACGTACGCCCGTATTTGTGTTGCACCGTCATAAA
GAATCTTGACCTGTCGGATGAAACTGTCTTCAAAAACTTCTTATCCCTAC
AATTTAgtacaaaaataacaatatacagaaataaaaaaataaaagaaata
atggaaaGTTGGGAGGAAATCGAACAAGCTGCAGATGATGGGCGCCATGA
GCTGCATTTAAATGGTGACGTCATCTCAAGCAAACTGGAacgaaacgaga
tgaaattacCTAACAAACTTTTTGAGCTCGTTGCGTTGAATTATTTGGAG
ATTTCAGATACTTCTCTTATTGAGATCCCTGATGATATGGCGAAATTAAC
AAATCTTATCAATTTGGCTTTACATAGGAACAGTATTGAAAAAGTTGGAG
ATTTCTTTAATCATTTACCGAAGCTGAAATTCTTTGATATGTCTTTTAAC
AAATTGACAAGTCTACCAGAGCAATTAAATTTAGGTACTGTACACACGTT
GAATTTATCTAATAACGAGTTGGCGTCTTTAGGTGATCTAAGTGGGGCTG
TTAATCTTAGTATTTTACACATAGAACACAATGAGCTAGAAGAATTACCT
ACAGGGTTAGTCACCTTAAAACATCTATTAGAAGTGCACGCCAGCAATAA
CCTAATAAACACCTTACCTGACGATCTACACACTTTTCCCGCGCTGAAAT
TATTTGACGTCTCCGAAAACAAGTTGAAAGAAGTACCACACTCAATGTCT
CAATGCCAACGTTTGAAGACGCTCAAACTTGAAGGGAACCCCCTGAAAGA
TAATCGATTACGTAAGATGACAACACAGTGCAATACTAGAGCTATACTGG
AATACATTGCCAAGCAGAGTGGTGGAGACGGGGGTaagaagggcaaaaaa
ggaaagaaagggaagaatcaaccggttaaggaagaagcagaagagaaCGT
CAGACGTATCGTGATCACTCCGAACACGGATGATGAGAAGCGTGTCATAT
GTGACGCCTCCGTGAAAGACGTACGCCCGTATTTGTGTTGCACCGTCATA
AAGAATCTTGACCTGTCGGATGAAACTGTCTTCAAAAACTTCTTATCCCT
ACAAACGAAACTTCACGAGAATGAATGTGACATGCGCACACGTGCTACCA
TTGCAACCCATAATGCAACAGGATTGAAATTCCCGCTTGTTTTCAAAGCT
TCGCATGTGGGTCAGACTGTCATCCATGCATTAGGGAAAAAGAAACAATG
CAATGCGACAACATTGATACAGAATCTGAAAGATGAAAGAGATGCATTGA
agcagaaaaagaaaagacaacCGAAAACTGGATTGTACAAACGAAACTTC
ACGAGAATGAATGTGACATGCGCACACGTGCTACCATTGCAACCCATAAT
GCAACAGGATTGAAATTCCCGCTTGTTTTCAAAGCTTCGCATGTGGGTCA
GACTGTCATCCATGCATTAGGGAAAAAGAAACAATGCAATGCGACAACAT
TGATACAGAATCTGAAAGATGAAAGAGATGCATTGAagcagaaaaagaaa
agacaacCGAAAACTGGATTGTACAAGTTTATTGAACTGGTGGATGGACA
GGAGATGATAGCTTCAGTTCGAAATCAAGATGGTGACGTCATTTCGTTGC
CTCCGATCACTAATGGTGAAAAAACcaagGTTTATTGAACTGGTGGATGG
ACAGGAGATGATAGCTTCAGTTCGAAATCAAGATGGTGACGTCATTTCGT
TGCCTCCGATCACTAATGGTGAAAAAACcaagATCGGTGCTTCAGTTGGT
GATGTTTTCATTGAAATATCATCACCAGTCAGTATCGCACAATGCAAGTA
CGTTATGGAAGAGTTGATCAAGAAAATGTTCCAACAGAATTTCAACTCTG
ACATGGAGGGTGATGAAGGGCTTTGGATTGAACCAATCAGAGTTgtggat
gaaaatgaagatttgagAATAGTTTATCCCTCTAAAATTGATAtcgattt
ttcaaatattccaGTCAAACGACTGTGAATCGGTGCTTCAGTTGGTGATG
TTTTCATTGAAATATCATCACCAGTCAGTATCGCACAATGCAAGTACGTT
ATGGAAGAGTTGATCAAGAAAATGTTCCAACAGAATTTCAACTCTGACAT
GGAGGGTGATGAAGGGCTTTGGATTGAACCAATCAGAGTTgtggatgaaa
atgaagatttgagAATAGTTTATCCCTCTAAAATTGATAtcgatttttca
aatattccaGTCAAACGACTGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_000325XLOC_000325-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000135_pilongenomesc0000135_pilon:384335..392956 +
Properties
Property NameValue
Aaloc1342-1587:8377
Aaloc1240-1341:6921
Aaloc1003-1236:6094
Aaloc1-1002:1