MSTRG.19867.2.p1 (mRNA) -

Overview
NameMSTRG.19867.2.p1
Unique NameMSTRG.19867.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000234_pilon:235894..238282-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19867.2.p1 ID=MSTRG.19867.2.p1|Name=MSTRG.19867.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2389bp|location=Sequence derived from alignment at sc0000234_pilon:235894..238282- (Clytia hemisphaerica_ch_hm2_pilon)
ATCAAATCTGTTCAATCAATTGTTAAGGAATGGAAAGGGCTTCGCAACCA
GTATCATATGCCACTCAAAGGTTTACCAGTTCATCCTACAACCAATGGGT
TAAAATTTTCAAGTCTTATGGTGCTTATATTCAAGCTTTCGAGCACTTAC
ACCCCAATAGAAGTGACGATGAAGAATATCAATTCCAGATAAAAGGAGCA
GATTATGTATTTGATATGTTACTCCTATTGGACACTTTGAAACCATTGGT
TGATGTTATGCTACAGCTGCAATCCTTGGATAATCCTGTCTGGAAACTTA
AAAAGTTGTTCCCTGAATTGATTGATCGATTGAAAGAAGCAGGTATGGTT
TCATTTCTATTAAAATTATCTGTCTTATCATTCATGAATTGTATCTGTCG
TCAATTCCGTATAATCGTCTGCAATTTCGAAGTTGTAAACATATTAAAAT
AATGGATTTCTCTTTTCAAAAGGAGCAAGAGATAAAGACGCTCTACCCAA
ACTCACCAAACACGAAAAAGATGTTAAAGTTTGTGGAAAATTCGATGGAG
TAACCCTATTGGCAGGATGGTTACCGAAAAGAAATGCAGACGGGACTTTC
ACGTGGACATCACGAAACAAGACTGACATCCGTAAAGAACATTCAGCGTA
TGTATTTTACTTGTTCTATTATTGATTTACGTTTAATGATTGGTGTAAGT
GTTTCCAAGTCTTCAGTGGTTATAACCTATTTTTACATAAAACATGCCAT
TTGCCAACCTTTATTCTATGCTGCAAGAAAATTCCAAAAAGGTTCAAATT
CTCTGCCTAATGCCAGTATGTAAATAAATGTTTTACGAATTTTGAAGCAT
ATGCATTTCTCTATTCTATTCTTTAGATTTGTGAAAGAACTTATCGAAGC
CTTAGAGAAACGAATAAAGCCAGAAATCGAGAAAGACCACATCGAAACAC
TGGCAGTTCTTGATGCCGCTGAATTGGTAAAATTGTCATGTGGTAAACGA
GAGAGGGGCAAGATTGCATTTGAACGAGAGGAGGGGGAAATTGAAAGTTA
TGGTGTCAAAGAGATTGAAAAACAAATGAAAAGTATTTCGAAGGCCGATC
ACATTTCAGACTCAAGCTTAAACTTTGATAGTCGAATGAGGTAAAAGGAT
TCACTTAAATTTCATCCTTTTCTAAAATCTGTTACAATCTGTTTCATTAT
TTTGGGTTGTAGAAAAATCGATATTAGTCATCTCATAGCAAATTACGAAA
AAATAGGAAAAAATATTTTATTTTAGATAATCTCCCTTTGGGGAAGTGGT
TGATTAATTTTGGCTTTTAGTTGTCTAGGGGGGCTTTCAAAAACATTTTT
TGGCTTTCCTAAAAACAAAACATTTTTTAGATTTAATTAAAAGGTAATTA
TTAAAATCTGAAAGAGAGTGGCTCATGTAAAGGCTGATGATAGGTTGTAA
TTTTTTTCAGTCATAGGTACATCGGAAATATAAAAAAGGCGGTATGTGAG
GCGATTTGGGAAAACAAAGCGAATTGGTTTCTTGATGCAGACAACAAGAT
AATTGAAAAACGAGAAAAACTAATATCATTCAAAGAGATCAAGTGTCGAG
ATTTTTTTCACAAGTTTGAGCTAAAATACGATAAATCAGTTGAAATCGGA
ATCCTTGACCAATCGGAAGTATATAAGTCATTCTACAGCAACAACTTCGT
CGTCTCAACGGCTGGAAAAGAAGGATGCACCATCATAGACGTAGCTCTTT
CAAAAGGGGGGCCAGAGGCTATAGCGGAAAGTTTTTACAACTGCATGCGT
AACCAGCAACAGCATGGGGGACAGTCGAATTGGGTTCTAACGACGAGAGC
AAAAATTGCCTGGTGCCTTCCATCCATCGATAGATTCGATCGTTTGATAA
AAGACGCTGTTGAGATTTATATCAATGGGGACGAAAAGATAAAACCCCAT
CGTGAAAACATGTTTTTCACGTCGTCCAGACACAATAGCTACAAAGTATC
AAAGGTTGTTGATCGCATTAATGCTGATTGTGGTCGATGTCCTTTCTTGG
TATCCTCATAATGAGATCGGACTAATTGTTTAGACTTGATATTGTTTCGT
TATGTTATTATTTTATCATAGAATTTTTCTTGGAAATTTAGTCCTCGTAT
CTCCCGTGTCTCCATAACCAAAGAAAAGCTTTCTCGGTTGGTTTAACTGT
GTGTGATACGAGTTTCCATTACGATAATCTCAACAAATATTTTAAATCTT
CCAGTTACCATTTCAATTTCTTCTCGTTGCTTTTTGTTTATTCTAGTATT
AGGTTGAGTCCGTCTCTTTTTTATCAGCAAGATTAAAGTTAAAATGATTA
TAAATTTACTTTTCAAGACACACTAACGTAACATCGTTC

Coding sequence (CDS) from alignment at sc0000234_pilon:235894..238282-

>MSTRG.19867.2.p1 ID=MSTRG.19867.2.p1|Name=MSTRG.19867.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5388bp|location=Sequence derived from alignment at sc0000234_pilon:235894..238282- (Clytia hemisphaerica_ch_hm2_pilon)
GTACATCGGAAATATAAAAAAGGCGGTATGTGAGGCGATTTGGGAAAACA
AAGCGAATTGGTTTCTTGATGCAGACAACAAGATAATTGAAAAACGAGAA
AAACTAATATCATTCAAAGAGATCAAGTGTCGAGATTTTTTTCACAAGTT
TGAGCTAAAATACGATAAATCAGTTGAAATCGGAATCCTTGACCAATCGG
AAGTATATAAGTCATTCTACAGCAACAACTTCGTCGTCTCAACGGCTGGA
AAAGAAGGATGCACCATCATAGACGTAGCTCTTTCAAAAGGGGGGCCAGA
GGCTATAGCGGAAAGTTTTTACAACTGCATGCGTAACCAGCAACAGCATG
GGGGACAGTCGAATTGGGTTCTAACGACGAGAGCAAAAATTGCCTGGTGC
CTTCCATCCATCGATAGATTCGATCGTTTGATAAAAGACGCTGTTGAGAT
TTATATCAATGGGGACGAAAAGATAAAACCCCATCGTGAAAACATGTTTT
TCACGTCGTCCAGACACAATAGCTACAAAGTATCAAAGGTTGTTGATCGC
ATTAATGCTGATTGTGGTCGATGTCCTTTCTTGGTATCCTCATAAATTTG
TGAAAGAACTTATCGAAGCCTTAGAGAAACGAATAAAGCCAGAAATCGAG
AAAGACCACATCGAAACACTGGCAGTTCTTGATGCCGCTGAATTGGTAAA
ATTGTCATGTGGTAAACGAGAGAGGGGCAAGATTGCATTTGAACGAGAGG
AGGGGGAAATTGAAAGTTATGGTGTCAAAGAGATTGAAAAACAAATGAAA
AGTATTTCGAAGGCCGATCACATTTCAGACTCAAGCTTAAACTTTGATAG
TCGAATGAGGAGCAAGAGATAAAGACGCTCTACCCAAACTCACCAAACAC
GAAAAAGATGTTAAAGTTTGTGGAAAATTCGATGGAGTAACCCTATTGGC
AGGATGGTTACCGAAAAGAAATGCAGACGGGACTTTCACGTGGACATCAC
GAAACAAGACTGACATCCGTAAAGAACATTCAGCATGGAAAGGGCTTCGC
AACCAGTATCATATGCCACTCAAAGGTTTACCAGTTCATCCTACAACCAA
TGGGTTAAAATTTTCAAGTCTTATGGTGCTTATATTCAAGCTTTCGAGCA
CTTACACCCCAATAGAAGTGACGATGAAGAATATCAATTCCAGATAAAAG
GAGCAGATTATGTATTTGATATGTTACTCCTATTGGACACTTTGAAACCA
TTGGTTGATGTTATGCTACAGCTGCAATCCTTGGATAATCCTGTCTGGAA
ACTTAAAAAGTTGTTCCCTGAATTGATTGATCGATTGAAAGAAGCAGGTA
CATCGGAAATATAAAAAAGGCGGTATGTGAGGCGATTTGGGAAAACAAAG
CGAATTGGTTTCTTGATGCAGACAACAAGATAATTGAAAAACGAGAAAAA
CTAATATCATTCAAAGAGATCAAGTGTCGAGATTTTTTTCACAAGTTTGA
GCTAAAATACGATAAATCAGTTGAAATCGGAATCCTTGACCAATCGGAAG
TATATAAGTCATTCTACAGCAACAACTTCGTCGTCTCAACGGCTGGAAAA
GAAGGATGCACCATCATAGACGTAGCTCTTTCAAAAGGGGGGCCAGAGGC
TATAGCGGAAAGTTTTTACAACTGCATGCGTAACCAGCAACAGCATGGGG
GACAGTCGAATTGGGTTCTAACGACGAGAGCAAAAATTGCCTGGTGCCTT
CCATCCATCGATAGATTCGATCGTTTGATAAAAGACGCTGTTGAGATTTA
TATCAATGGGGACGAAAAGATAAAACCCCATCGTGAAAACATGTTTTTCA
CGTCGTCCAGACACAATAGCTACAAAGTATCAAAGGTTGTTGATCGCATT
AATGCTGATTGTGGTCGATGTCCTTTCTTGGTATCCTCATAAATTTGTGA
AAGAACTTATCGAAGCCTTAGAGAAACGAATAAAGCCAGAAATCGAGAAA
GACCACATCGAAACACTGGCAGTTCTTGATGCCGCTGAATTGGTAAAATT
GTCATGTGGTAAACGAGAGAGGGGCAAGATTGCATTTGAACGAGAGGAGG
GGGAAATTGAAAGTTATGGTGTCAAAGAGATTGAAAAACAAATGAAAAGT
ATTTCGAAGGCCGATCACATTTCAGACTCAAGCTTAAACTTTGATAGTCG
AATGAGGAGCAAGAGATAAAGACGCTCTACCCAAACTCACCAAACACGAA
AAAGATGTTAAAGTTTGTGGAAAATTCGATGGAGTAACCCTATTGGCAGG
ATGGTTACCGAAAAGAAATGCAGACGGGACTTTCACGTGGACATCACGAA
ACAAGACTGACATCCGTAAAGAACATTCAGCATGGAAAGGGCTTCGCAAC
CAGTATCATATGCCACTCAAAGGTTTACCAGTTCATCCTACAACCAATGG
GTTAAAATTTTCAAGTCTTATGGTGCTTATATTCAAGCTTTCGAGCACTT
ACACCCCAATAGAAGTGACGATGAAGAATATCAATTCCAGATAAAAGGAG
CAGATTATGTATTTGATATGTTACTCCTATTGGACACTTTGAAACCATTG
GTTGATGTTATGCTACAGCTGCAATCCTTGGATAATCCTGTCTGGAAACT
TAAAAAGTTGTTCCCTGAATTGATTGATCGATTGAAAGAAGCAGGTACAT
CGGAAATATAAAAAAGGCGGTATGTGAGGCGATTTGGGAAAACAAAGCGA
ATTGGTTTCTTGATGCAGACAACAAGATAATTGAAAAACGAGAAAAACTA
ATATCATTCAAAGAGATCAAGTGTCGAGATTTTTTTCACAAGTTTGAGCT
AAAATACGATAAATCAGTTGAAATCGGAATCCTTGACCAATCGGAAGTAT
ATAAGTCATTCTACAGCAACAACTTCGTCGTCTCAACGGCTGGAAAAGAA
GGATGCACCATCATAGACGTAGCTCTTTCAAAAGGGGGGCCAGAGGCTAT
AGCGGAAAGTTTTTACAACTGCATGCGTAACCAGCAACAGCATGGGGGAC
AGTCGAATTGGGTTCTAACGACGAGAGCAAAAATTGCCTGGTGCCTTCCA
TCCATCGATAGATTCGATCGTTTGATAAAAGACGCTGTTGAGATTTATAT
CAATGGGGACGAAAAGATAAAACCCCATCGTGAAAACATGTTTTTCACGT
CGTCCAGACACAATAGCTACAAAGTATCAAAGGTTGTTGATCGCATTAAT
GCTGATTGTGGTCGATGTCCTTTCTTGGTATCCTCATAAATTTGTGAAAG
AACTTATCGAAGCCTTAGAGAAACGAATAAAGCCAGAAATCGAGAAAGAC
CACATCGAAACACTGGCAGTTCTTGATGCCGCTGAATTGGTAAAATTGTC
ATGTGGTAAACGAGAGAGGGGCAAGATTGCATTTGAACGAGAGGAGGGGG
AAATTGAAAGTTATGGTGTCAAAGAGATTGAAAAACAAATGAAAAGTATT
TCGAAGGCCGATCACATTTCAGACTCAAGCTTAAACTTTGATAGTCGAAT
GAGGAGCAAGAGATAAAGACGCTCTACCCAAACTCACCAAACACGAAAAA
GATGTTAAAGTTTGTGGAAAATTCGATGGAGTAACCCTATTGGCAGGATG
GTTACCGAAAAGAAATGCAGACGGGACTTTCACGTGGACATCACGAAACA
AGACTGACATCCGTAAAGAACATTCAGCATGGAAAGGGCTTCGCAACCAG
TATCATATGCCACTCAAAGGTTTACCAGTTCATCCTACAACCAATGGGTT
AAAATTTTCAAGTCTTATGGTGCTTATATTCAAGCTTTCGAGCACTTACA
CCCCAATAGAAGTGACGATGAAGAATATCAATTCCAGATAAAAGGAGCAG
ATTATGTATTTGATATGTTACTCCTATTGGACACTTTGAAACCATTGGTT
GATGTTATGCTACAGCTGCAATCCTTGGATAATCCTGTCTGGAAACTTAA
AAAGTTGTTCCCTGAATTGATTGATCGATTGAAAGAAGCAGGTACATCGG
AAATATAAAAAAGGCGGTATGTGAGGCGATTTGGGAAAACAAAGCGAATT
GGTTTCTTGATGCAGACAACAAGATAATTGAAAAACGAGAAAAACTAATA
TCATTCAAAGAGATCAAGTGTCGAGATTTTTTTCACAAGTTTGAGCTAAA
ATACGATAAATCAGTTGAAATCGGAATCCTTGACCAATCGGAAGTATATA
AGTCATTCTACAGCAACAACTTCGTCGTCTCAACGGCTGGAAAAGAAGGA
TGCACCATCATAGACGTAGCTCTTTCAAAAGGGGGGCCAGAGGCTATAGC
GGAAAGTTTTTACAACTGCATGCGTAACCAGCAACAGCATGGGGGACAGT
CGAATTGGGTTCTAACGACGAGAGCAAAAATTGCCTGGTGCCTTCCATCC
ATCGATAGATTCGATCGTTTGATAAAAGACGCTGTTGAGATTTATATCAA
TGGGGACGAAAAGATAAAACCCCATCGTGAAAACATGTTTTTCACGTCGT
CCAGACACAATAGCTACAAAGTATCAAAGGTTGTTGATCGCATTAATGCT
GATTGTGGTCGATGTCCTTTCTTGGTATCCTCATAAATTTGTGAAAGAAC
TTATCGAAGCCTTAGAGAAACGAATAAAGCCAGAAATCGAGAAAGACCAC
ATCGAAACACTGGCAGTTCTTGATGCCGCTGAATTGGTAAAATTGTCATG
TGGTAAACGAGAGAGGGGCAAGATTGCATTTGAACGAGAGGAGGGGGAAA
TTGAAAGTTATGGTGTCAAAGAGATTGAAAAACAAATGAAAAGTATTTCG
AAGGCCGATCACATTTCAGACTCAAGCTTAAACTTTGATAGTCGAATGAG
GAGCAAGAGATAAAGACGCTCTACCCAAACTCACCAAACACGAAAAAGAT
GTTAAAGTTTGTGGAAAATTCGATGGAGTAACCCTATTGGCAGGATGGTT
ACCGAAAAGAAATGCAGACGGGACTTTCACGTGGACATCACGAAACAAGA
CTGACATCCGTAAAGAACATTCAGCATGGAAAGGGCTTCGCAACCAGTAT
CATATGCCACTCAAAGGTTTACCAGTTCATCCTACAACCAATGGGTTAAA
ATTTTCAAGTCTTATGGTGCTTATATTCAAGCTTTCGAGCACTTACACCC
CAATAGAAGTGACGATGAAGAATATCAATTCCAGATAAAAGGAGCAGATT
ATGTATTTGATATGTTACTCCTATTGGACACTTTGAAACCATTGGTTGAT
GTTATGCTACAGCTGCAATCCTTGGATAATCCTGTCTGGAAACTTAAAAA
GTTGTTCCCTGAATTGATTGATCGATTGAAAGAAGCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19867MSTRG.19867Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19867.2.p1MSTRG.19867.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19867.2.p1.exon4MSTRG.19867.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19867.2.p1.exon3MSTRG.19867.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19867.2.p1.exon2MSTRG.19867.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19867.2.p1.exon1MSTRG.19867.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000234_pilongenomesc0000234_pilon:235894..238282 -