MSTRG.19664.2.p2 (mRNA) -

Overview
NameMSTRG.19664.2.p2
Unique NameMSTRG.19664.2.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000228_pilon:156327..164371-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19664.2.p2 ID=MSTRG.19664.2.p2|Name=MSTRG.19664.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8045bp|location=Sequence derived from alignment at sc0000228_pilon:156327..164371- (Clytia hemisphaerica_ch_hm2_pilon)
AGATAAACTAAAAAAAACAAAATAAAAAAAAGTTAAAAAACAGAAAGATG
AGACTCACAGACAACGTTATCCGTGCTTTCAAACCAGCCAAGATTTTTCG
TGACAACACAGACAGGATAAACCACATCGATTACACTTCCAACGGTGAAA
CATTGATCACAAGTAGCGATGATGACTCCATCACCCTTTACGATTGTTTT
GATGGAAAGTAAGATTTTATTTTAACATCATCAATTGTCATTATTGACAT
GCTGATGAAGTCACGTAAAAATGATGAAAATTTCAAGTTAAAAGTGGTTG
CTTCATTTTTCTGTCTTATCAATTTGCTGCTTCTAAACTTCAGAATTTTC
TATCATTATGAGAAGATCTTACTAGTAGAAGTAGTAAAATAATTTTTTTC
TTTTTTTAAACAAACGTTCTTATTGGCGGTCATACTTTTCTTAAAAGAAC
TGAATGAAAACGGAATTTTGATCGGATCGTATCGCTTTGTCATTGGATTG
TCCGTATTTTAGAGTGAGTTCTGTTACAATTATCCCTGGCCTAAAATCTC
AGGTTGGCAGCAATATCATGTATATAGAATTCATTCTTTCAAATAAATGT
GTTTCTCTCCTTTTTTAGACAGAAGAAGACATCAAATAGCAAGAAATATG
GAGTATCGCTCATTCAATTCACTCACGCATCAAACACTGTTATACACACC
TCAACCAAAGTCGACGGTAATAGATCTCGTTAATTTCTTAGGTTTTATTT
TATTAATAAAATTTGTTTTTAAAAAGCTATTTGGACGATATACCATCTAT
GTTTATAACACTTCCTAAATAAAACACGCATAGATTCGTATTCGTATCGT
ACTCCGAGTACGAAAAAATTAAGAAATGGGATTAAGATTTACAGATTTAG
TTGTCATTTTTCACTTTCATCTATTTAGATACCATTCGATACTTGTCACT
GCACGATAACAAATATCTGCGCTATTTCTCTGGACATACCAAAACGTAAG
TATTGGCATACAAATCTCCATAAAATTTGATTGCATTGAGTCTTGTCTAA
CATGAGATTTACGAATTAATTGATGTTGTTTCTTGACCTTCTCCATAGCC
TTTGTTGACTGCTCTGTCAAGCGAAATAAATATTTCTCAATATTTGTTTC
AGTGTTGTCTCCCTTCACATGTCACCTGTAGATGATAGCTTCATATCCGG
TTCACTGGATCGTACCATCAGATTGTGGGATCTTCGCTCCAACAACTGTC
AGGTAACTACTTTCGAAAAAAATAAGTAACCATATTTTACTTTTGTTGCT
TAAAGATTTATCTTCGATCAAGTTTATCGCTCATTCCATTCGAATAAATT
GAGATTCCAAATTAATACAATTTTGTAGTTCAATCGTTCTTTTATTTCTT
CGAAAATCTCTGATCAACGTGTGTGTCCATGCAAAAAAATTTCAAAGAAA
ATCGTCTAAAAATTATCGACCTTTAGTCATCATAATAAAAGACAGACAAT
AATTTCGTTTGTATTTGTGTTTTGTTATTCAGGGTTTGATGCATGTGAGC
AGTCGACCGGTGACATCTTTTGATCCTGAAGGTCTCATCTTTGCCGCTGG
TGTTGATGCTGAAATCATCCGTCTCTATGATCTAAGAACGTTTGATAAGG
TTGGTATTTCCCTCAATCTTACAAGTGTGAATAGTTTGATAAAAATATTT
CGTTTAATCATTCTTTGCCACGGCATGACGTCACAATTGGGGAAAACAGA
ACACTTACTAAAGATAATTATGTGTAATCATCAAACAAAATCTTTTAGTG
AGTTAAACCATAGTGTTTGTTTTCCCCTCGCAATACCTTAACCCTATTCG
GCCTAGGGGGGGGGGCTCTTTCTGTTCGGAGGTCAAACTATTGGTAATAG
CTCCTGAAATAATAGAGCTTTTGCCGTGAAATTTTCTGTAAATTCCCAAC
TTTCATTTTGCTTCAAATTAAAAAAAAAATTGACACTTAGATATTTTCAC
ACCTTGAGCATGATGACATTTGTGACAGTAAGGTGTCACAAAAGTTGACA
CTTTTGCAATACAAATTTATTTTTAATGTCAAATTATATCGTTTAAACCG
TAATTTATTGAATATTCAGGATAAAATAAGCATTTTAAACTCAGGCAACT
TTTCTCCAAAGCCTTTGTTAGAATACAATATCTATTTATAAGAACAAAGG
AAATTTTCGGTTTTTGCTCACTTTGGGCATGATGAGTGACGTCATCAAAA
TTTTTTTGTCAAAAGTTACCTTACGTGACAAGGATCTTGTGTGCCAAATT
TCATCCAAAAAGACCCATTAGATCAAAAGTTAAGGGGTGGTACAGGAAAA
GCCCCCTCCCCTAATTCTGAACCGCCCCTAAAAGCCTAGGTTGAATAAGA
TTAAAGGAAGAAATTTTGGCGGAAAGAAAATTTGGCGGATTTGGCGGTTC
CCGCCAAAATTTATTATTTCCTTCATCCGCCAAATTAAATTCCCGCCAAA
TTTATTTTATTTAACGCATTCCCCAAGTTGGTGCTATTTCAGGCCTTAAA
ACAGGTTTTTTTACTTATTTGATATAGATTTTGGCCAAAAATATCCTGCA
ACCGCCAAATTTAATTCCCGCCAAATTTAATTTTTCCAGCCATCCACCAA
AGTAAATTCCCTCTGAAAAATTTTTTTCGACCATCCGCCAAATTAAATTC
CCGCCAAAATTTCTTCCTTTAAGGTAATTAAATTAAAAGATGTCACATGA
CTTTCCGTGGCAAAGAATCATCGTCATCATTGAGAACGTTTTGGACCCTT
TTTGGTTCTTGGATAGAACCTATATTCTCTGATTGGCACTCCTTTCTGAT
GCCCAAAGTTTCAAGCTTTCAAAGAAAAAGCTCTATTCACCACCAAAATC
CCCATAGTTCAAAACCACTCCCTATCTCGACTAGTCCATAATCACGTTAC
GAAGGTTATGACTTATTAAATGTCTACCCTACTTTTGATTAATGAAGTAA
ATATGAAAATCTTTCTTCATTCCGAAATTTAAAGGGTCCATTCGCTACAT
TCAATCTACCGCAAGCAGACAATGGCGTTGAACTTTCTAGTATCAAGTTC
AGTAACGACGGTAAAAAGATATTGGTCTCAACAACATCAGGATTGGTGTA
TCTGTTAGATGCTTTCCAAGGCAATCTTCTTCATACGTTTATGGTAAGAT
AGTTTGGTGTATTTTTGGTGTCGCTTGCTTAGAAGTTTCATTTACCTAGA
AGTATGTGGTATGTGGTTCAGAACCTGGAATTTTCCGGTTAATTTTTAAG
TTAAATCCTCACATGTGTGCTTAGTGAATAACCTGGGATCTTATCTGAAT
TTTAATAAAAAGTACCTGGAACTTTCGGGTTATATGTGAGTTTATACACT
GTTGTTGAATTTTTTTTCAAATTTGAAAATTGTATTTGTTCGTGTTGTTG
TGCCACATTGTATTTTGCGTACTTTTAGGGTCTCTCTACACCAGGAAGCG
GTGCTGTTTTCTTGGAAGTATCCTTTTCTCCAGATTCACAATACGTTTTG
TCAGGTTAGAAAAACTTCGTGTATACATAGCTCTTCTCTGTGCTGATTAC
TATAATCCATACAAACTTGAATTAAATATTGCCACCACCTTGTAAATCTT
CAAAATAATGCTTGTACATATTTTTACAACGAATTAATAGTCTTTTCCAA
GAAACCAAGGAATTAGCAGTTAATCTATACACCCCCCCCCCAAAAAAAAA
GCTGAATTAAAAGTGATTGGGCTCCAGGTTACCTGCTTCTAATAGCGTTT
GATGTCTTCTAAAGACATTTTACGCCTTTCCACACTGGTGAACTCAAACC
TGATTCAATTTATTGGACCTACCCCGGTGGGGTAGAGGTCCTATAAATTA
ACCGATGTCCGTCCGTTCGTTCGTTCGTTCGTCCGTCCGTCTGTTACCAG
CTTTTCTCAGGATTGGCTCATTAGTTTTTTCTGATTTTTGGCACAATGAT
GCAAAATGGTAATGCCCAAAATGTGACGGAGCCCGATTTTCGAAAAAAAA
TCATTTCCGGCCGAAAATGCCGGAAATATGCCGGAAAAACCGGTTTTTTG
GCATTTTCTCGAGATTTCATCATTACTTTTATCAGATTTTTTGCACAAAG
ATGCGTATTAGCAATGCCTAAAACATGGCAGAGTCCGATTTTTGAGAAAA
ATTCTTTTCCGGCCGAAAATGCCGGAAATATGCCGGAAATCGCCGTTTTT
GCAGATTTTCATCGGACTTTTTCCTTATATTTCGTTGTTTTTTCACACAA
AAACATTATTAATAGCAATGTCCACGATTAAGCATGGTTCAATTGTCGAT
AAAACTGATTTTTGAAGCCGGAACTTTCTAAAAATCGCCGGAACAGCCGA
TTTTCTCCGGAAAAACGGTATTTCTTGAATTTCTCGAGCTGTACTTTATA
TTTTTTTATGAAATTTTGCACACTGATGGAAAATGACAATACCTAAAAAG
TGACGGAGCCCGATTTTCGAAAAACATTTTTTTCCGGCCGAAAGTGCCGG
AAACATGCCGGAAAAACTGTTTTTTTGGCATTTTCTCGAGATTTTATCAT
TAGTTTTTTCTGATTTTTTGCTCTAAGATGCGTATTAATATTGCCCAAAA
CATGGCTGAGTTCGATTTTTGAGAAATTTTTTTTTCCGGTTGAAAATGCC
GGAAATCGCCGTTTTTGCAGATTTTCATTAGATTTTTTCCTTGTATTTCT
ATGTTTTTGACACAAAAACATTATTGATAACAATGCTCACCATCAAGCAT
GATTCAATTGTCAATAAAACTGATTTTTGCGACCAGAACTTTCTATTAAT
TTTTTCCCTACAACCCTTCCCTCTCCCCTTATCAAGAATCAATGATGAAT
TTATTGCGTTATGCATTTTCGCTAAACGCTATGTTTTCTGAATGATTTTT
TTTCATTTTTCTCCTTGCATTGCTATCTAACTTTCATCATCAGGTAGGTC
CATTCAGCATGTTGCTTGTTTTGTTTTTGCTCCCATCATCTCTAGGTTCA
TCGAACGGCAAGATCTACGTGTGGTCATCGGACAGCGGTAAACGGATAAC
CGTGCTGGATGGTATGCACCCTGGAAGCACGCAATGTGTTGCTTTCAACC
CCAAATACATGATGTTCGCTTCTAGCTGCTCTAACCTTGTAAGTGTACCT
TTCGACATAATTTGCTTTAGGACTATTTTCTAACACAACAAATCAATGAT
GAAATAAGAAAATTAGATTTGAATTTTGGTGTTTTTCAAGAAGGGGCTGG
GAAATTTTCGAGAATGTCTCTATTGTCTGTCACTATCAGTATGTTGGGCA
AATTCGGGGGAATAAAGAAATTGAGGCAAGAGATATGATACTTTCTCTTT
TTCACTCTTCAAAACAAAAGACATACAATCTAAAGTCCTACTGCATAGAA
CAAATATTTATCATGTCCAATTGACATTTATATTGTAAAAATGTATATTT
TTTTGATTAAAGTAAAACCAAAGAGCGTTAAATATTTCTAATGTAAACCA
AAAACAGAAATTGAATGTGTAATATTTCGTTAAGAAAACTAAGCATTTTC
ATTCAGCCATTTTTCAAGTTTATTCAAGTCATACCCGACTGGGCCTATGC
CTCCATCATACACCACTTTCCCATTCTGGATCCCATACAAACGATCTGGG
AGAGCAGCGTATGCCTTGTTAGCTTCGTTCGTCATGAAGTCAACCAGCAT
TGGACAGTACTCTTTCAGTTTGGTTGGAGCAGATTCGATCATCATTTCAG
CTGCTTGGATTCGTTCCTCCAACTTTGTTTGTTGTTTGATTTGTGGTATG
TGAGGAAGATCTTCGTTCAAATCGACCGGGTGTGCTTCTGTGATATAAAT
CATGACAAAGTCAGCTCTATCTTTGAAGTGTTCACTAAGTCCGGCCAGGC
GTTTAAGAACACCAACTAGCGGGAATCAGGTGATATTTCCAAAAGTCAAT
ACTAAAGGCCGGTATTGGCGTTGGAAATCTAGTATTTTCTTCTCTGTTTC
GTCCTGTAGATCATACACTTTGACGCTGGGTGCCTCTTTGTTGATGAATG
CTTCTCTACGAGCGTCCGCTAACGCGATTCTGAAGCGTTTTAAAGTTTGT
TGTGGTCTGCCAAGAAAGTGATGTGTTTTGTTTTTGTCAAAGATGTAAAC
TATTTTATGGTAGAGTGTTGTCAAAATCAACATTGGTAGGGTGATGAGAT
ATGTTTTGAGTGTGCGGACCCATTGTTGTGGGTCGTCATAACTCTGTATG
TAGTTTATAGTCCAACTTGTTTCTAAGGTGAATAACATTTTAACACTCGC
ACGAACCACTAAACCATTTCTTTTGTCCCTCCTTGTCAACTTCTTCCTCG
CTGAGTAAAAAGCAAAGGCTGAATAAAATAAACGATTATTTTCAACGAAA
TAAAAAATGCGGACTAACGTCTCTTGATTGAAAAGAAATTATACTACATA
AATCAAAGTATTGACATTTGGTAATTACCATTTACATTTGGTTATTTTTA
ATGTTATATAGATAGATTCTTCACATTGCCAATGTTGTAGAATCTTATAT
TGTGATACTGTGTGTTAGTTTTCATCGTCACAAGACAATAAACCGTAAAG
CTTAGATTACTTTTTGGACATACCCCGGTGGAGGTCCTATAAATTAACCC
GTATTTGTTCGTGCGTTCGTATGTTAGTTACAAGCTTTTCTCAAGATTGG
CTCATTCAAATTTTCTGATTTTTGGCACAAAGGTACATGACTCCCTCGAA
GGTGACGGAGCCCAATTTTCGAGAAAAAAAACGGCTAAAAACGGTTTTTT
TGGACTTTGTGAAAAATCGGACCATTAGTTTTCTCTGATTTTTTTTGCAT
GAAAGTAGGGTACCATCAGAGGTAAAACATGGCTTAAGCAGATTTTTGCA
AAAAAAATTTTCGGCTCAAAAAACGCAACTTTATCTATAAGAATACTATT
AATAAGCATACATCAATGTTCTTAGCCGAATTAGTCAATTTTTGATGAGA
CAGATGTTTTTCTGCTCATAAAGGCTAACTTTTGAAGAATATGTGTGTTT
AGACATGAAGTTTTGGTTGCAAGACGTGTTTTTATAGAAAAAGTGACCAA
ATTCGATATTTTGTTATAAGCCTATTATTATTACTATTATTACCAATTAC
TTAGTTATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTATGATTTTT
TTGCACAAAGATGCATAACTATAAACCCTCGAATGTGACGGAGCTCGATT
TTCGATTTTCTAAACGTGTTTTTTATAAGAAATAAACGACGAATTTTAAT
ATATCGTCACTATTTGTGTTCTGAATGATTGTTTAATGGTCACGCTCACG
TAAATATCAATTATATATGTGTTAAATGCATAACCAGGTAGGTCCATTAA
AGTATCGCTTGTTTGTCATTTATTTGCTCTTTTTATCTACAGGCATTTTG
GATACCAGATTTGAACGAAGTTGACAAATAACCTTCAGACCCAGAAAAAC
AATCGCGCAACACCGTTGAAAACAAAATGGTTAACAGGAGAAATGACCAT
AATTGGACCTTCGAATTGGCGAAAATGAAATATTTGTTCCTATTGAGATA
AGTTTACTCATTCTCAGCAACCAAACCATGAACTATAAAATCCAAAGAGA
CTATAATACACAGACATCTACTTGAAAACGTCAACTTGAACTGATTTGTG
TCGTCCGTATATTTTGCACTATAAGGAAGCAACTCCTTGGTGCTGCAGAC
ATCATTTGTCTGACCACATTGTATAACTTGACGTGCAGGTTACTCTCCGG
AGTTTACGAAAACCTGTTATTTTGTCGAAGTTTACCGAAGAATGTAGATA
TTTACTATGCCCTTCAATGTTACAAATTTTATTGGGATTTTTATAAAAGG
AAAGGTAAGGGTTTGGAAACTTGTGTATAAAATATTGATTTTTTGGAAAT
TTTTTTATTGAATAAAAAAAAACTGATACAAAGTAAAAACATGAA

Coding sequence (CDS) from alignment at sc0000228_pilon:156327..164371-

>MSTRG.19664.2.p2 ID=MSTRG.19664.2.p2|Name=MSTRG.19664.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0000228_pilon:156327..164371- (Clytia hemisphaerica_ch_hm2_pilon)
TGTTGTCTCCCTTCACATGTCACCTGTAGATACCATTCGATACTTGTCAC
TGCACGATAACAAATATCTGCGCTATTTCTCTGGACATACCAAAACAAGA
AGACATCAAATAGCAAGAAATATGGAGTATCGCTCATTCAATTCACTCAC
GCATCAAACACTGTTATACACACCTCAACCAAAGTCGACGATGAGACTCA
CAGACAACGTTATCCGTGCTTTCAAACCAGCCAAGATTTTTCGTGACAAC
ACAGACAGGATAAACCACATCGATTACACTTCCAACGGTGAAACATTGAT
CACAAGTAGCGATGATGACTCCATCACCCTTTACGATTGTTTTGATGGAA
ATGTTGTCTCCCTTCACATGTCACCTGTAGATACCATTCGATACTTGTCA
CTGCACGATAACAAATATCTGCGCTATTTCTCTGGACATACCAAAACAAG
AAGACATCAAATAGCAAGAAATATGGAGTATCGCTCATTCAATTCACTCA
CGCATCAAACACTGTTATACACACCTCAACCAAAGTCGACGATGAGACTC
ACAGACAACGTTATCCGTGCTTTCAAACCAGCCAAGATTTTTCGTGACAA
CACAGACAGGATAAACCACATCGATTACACTTCCAACGGTGAAACATTGA
TCACAAGTAGCGATGATGACTCCATCACCCTTTACGATTGTTTTGATGGA
AATGTTGTCTCCCTTCACATGTCACCTGTAGATACCATTCGATACTTGTC
ACTGCACGATAACAAATATCTGCGCTATTTCTCTGGACATACCAAAACAA
GAAGACATCAAATAGCAAGAAATATGGAGTATCGCTCATTCAATTCACTC
ACGCATCAAACACTGTTATACACACCTCAACCAAAGTCGACGATGAGACT
CACAGACAACGTTATCCGTGCTTTCAAACCAGCCAAGATTTTTCGTGACA
ACACAGACAGGATAAACCACATCGATTACACTTCCAACGGTGAAACATTG
ATCACAAGTAGCGATGATGACTCCATCACCCTTTACGATTGTTTTGATGG
AAATGTTGTCTCCCTTCACATGTCACCTGTAGATACCATTCGATACTTGT
CACTGCACGATAACAAATATCTGCGCTATTTCTCTGGACATACCAAAACA
AGAAGACATCAAATAGCAAGAAATATGGAGTATCGCTCATTCAATTCACT
CACGCATCAAACACTGTTATACACACCTCAACCAAAGTCGACGATGAGAC
TCACAGACAACGTTATCCGTGCTTTCAAACCAGCCAAGATTTTTCGTGAC
AACACAGACAGGATAAACCACATCGATTACACTTCCAACGGTGAAACATT
GATCACAAGTAGCGATGATGACTCCATCACCCTTTACGATTGTTTTGATG
GAAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19664MSTRG.19664Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19664.2.p2MSTRG.19664.2.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19664.2.p2.exon9MSTRG.19664.2.p2.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19664.2.p2.exon8MSTRG.19664.2.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19664.2.p2.exon7MSTRG.19664.2.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19664.2.p2.exon6MSTRG.19664.2.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19664.2.p2.exon5MSTRG.19664.2.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19664.2.p2.exon4MSTRG.19664.2.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19664.2.p2.exon3MSTRG.19664.2.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19664.2.p2.exon2MSTRG.19664.2.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19664.2.p2.exon1MSTRG.19664.2.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000228_pilongenomesc0000228_pilon:156327..164371 -