MSTRG.18607.2.p1 (mRNA) -

Overview
NameMSTRG.18607.2.p1
Unique NameMSTRG.18607.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000202_pilon:246359..251701+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.18607.2.p1 ID=MSTRG.18607.2.p1|Name=MSTRG.18607.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5343bp|location=Sequence derived from alignment at sc0000202_pilon:246359..251701+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaaaaaacatgatgtCAAGTTGGATAAAGTCATTTATCATTTCTGCGG
TGGCATTTTTGATAGTTGAAGGAAAATTACGTTTCGTTGATTTGTCGTTA
AAATATGATGAGAAAAATACACCTTACTATGGTATCTATAAAAGCCATTT
CAAGTTTCTTCAACAGGTAAAGGTCCATTTATCTAGAATGTGATTGCCCT
TCTCTTATCTGAGCCGCTCTTGTTGCCTGTGGGAGAGGGGCAACCATTTT
AGTGTCAACTATTTACATTCGACTGTCTTTAACTCGAAATTCTGTTATTc
caatctttctgtaatttgtACTAAAATATGTGGTCCCCTTAGCTAAAGAC
TATagtaaattactctctgtaattcgaatctttctcttattcgaataaaa
tttttggtTCCTTTAAGATCAAATTAAAAAGAGTGACTTATATATCCAAT
ATGATAACTTTTATTTATCAATCTGACAGGTTTCAGAACCATATCCAAAG
TTTCAACTTGGTTACAATGTTTTTAGTACGAATGAGCACGTGGGAACACA
CATTGATGCTCCATTACACTTCGTTAAAGATGGACAGACTGTTGATCAGA
TACCTCTAGAAAAATTAGTAAGTATACTTAATTACACATCTAAAAGAAAT
TTGCATTTTTGTTCAACTATACTCACTTCCCCTTCTCATAGAATCAGTAG
GATTTTCCCAGCTGATAATGGGAAAACTAACGGACTGAAACCCGGGATTG
ATAAATGCTTTTTATGgctgggatttgaattccattgttttcaagtcacg
AAATCTAGTTGGAATCGAAAATAGCATAAtactttgcagtgaggatttgt
atatttaattattttcagtggggacaaaaattggtgtacagtttacaact
ttttttttttttttttttttttttttttttttttttttttctttattgaa
acaaaaacacgtgtacactacgaacatattacaaaacattacttaaacat
aaaatatagtccctccccccgctaggaactaacgttatatcgccagaggt
actagactatgtaaaaataaataaataagtaaataaagaaaaaatcttgg
agaaggaagctacaattgttaggtaaaagcctaaaataaagcaccgctaa
accttccagcttcgttaagaaattcaacaacagaacaaagaatagattta
tttagatttgaattcaaactttcatccccatataataaaagccgacagaa
aaaaggagggttaagcggcggatgaaaaataatgcctagggtctgaagtt
tgtcgaacaaagaatgtcttgcatgggaatatatagagcagtgcagaaga
aagtgctgagtgttttcaacagagttagttcggcaaccacagaaagggtc
taaagtgtcgcggaagccatgtctaaatttatgctcgttgagatggctga
aaccgacccgaagtcgattaagaaagatcactccttgaatgtcaggaaca
tcaaaaacatgagattgcttgggtctcaaaaattcatagattgctttttt
gaaagttttaattgaaggtagatctcgtatattacctcccagaacattcc
actgagatatgcagtacggaaaaaaagtgttacggaaacgctcagttcgt
atatttagaggataaataggatttcttgttctaaggccacctggtgctgt
aagtcttactggcaggtagttacgtaaatacgaaggggctaaattgttaa
taattccatagaagaatgtcatttcttctagcaaagcgcctgtcagcaag
actttcaagaccaagttctgaatatagtttttcttgagacgttccacgaa
aacagcctgttatagctaaacaggcattatattgaatagattcaagcttc
tgcacaaaggtagcatttcccgggcggtcatatacgatatcaccataatc
aagatgaggcctaatgaaagatttataaatggttagtagagatctcctag
gcacatgcttgcgaagccggttaataagaccaattcctttattggccttt
tttatcttctcgtctagatggcgatcaaaagaaagttttgaatctaagat
tagaccaagatgtttctggtactcactggtcgcgatattagaattattaa
aggagattactggagcattaggaggagtgagtctacaggtaaaatagact
tcaatggcttgcttagatgggtcagggttaaaagacatcttccattgatg
agcccagtcagttatcctggagagatctctgttaagtacttcaaggctca
agagttgatcaatcacaagagagaataaagaggtatcgtcagcaaaaatc
ttcggttttgactcaaggttttttggaagatcattaatataaattaagaa
gaacacAATGGACCAAGgatcgagccttgaggtaccccagcattgattcg
ctttccactcagatgtttttccatttaacacaactctctgatgcctatcg
ttaagaaagctgcgaattaaggaaaacaacggtccagtcaccccataaga
tttgagtttttttttttaagagtaagccatcgtgccacaacccgatcgaa
tgcctttgaaatatctaaaacaccccccctggtatctagagaaggatctt
tgtcaaaccctgtataaatatcatgcgttatggataacaactgagaaatg
caggaatccccctcccgaaaaaccagactgacaaggagaaaataagttat
tgttttcaaaatacctgtaaagtgtatcgtaaatacacttttcatatatt
tttccaaacacaggaagaagagacactggtctgtagtttttggctatgct
cctgtctccctttttatagacaggaaccacgttacctttcttccactgtg
atgggaagatgccagagttgatgatagaaagattgaatatgctaagcaaa
ggttttactagagacttaccacagattctgaccatacgagtagaaatatt
atcccacccatgggccttgttaacattcaaagaattaataatagactcga
ttttttcttcttcaaatacaagaTTATCCCAGTCtagagttagtaagaaa
ttgttcaggtggcaaaacactgccagtatcgataagtgagcattggtttg
agaaaaaagagttaaaaatatcggccttctcagaaacatcacttacaagg
acgtttctttcatttcgaataggtggaattttcggggttttacgtatgtt
cagaaactgcttcagcgtagaccagtatttcttacttcctatgtttggat
catttaaagagttgccaagacgagaaaaataactatccTTGGCAGTCTTG
ATGGCCAATCTGCACCTGTCAACCATGTTATCAAGTGTCTGACCATCTAA
AGGATTTCCCCATTTTCTCCAACGACGATTTACAACTGGGGACAACTGCT
CATTCAGGAGATTTGAGTTGCAGTGCAGATGTATTCGCTGAGTACTGTAA
ACTGGCTGTGAATATAGAGACAGGGTAAGGCTGTATATGGACTGAAGGGA
GATTAATTATCTTGATATGCTATTATTCAGGTTGGTCCGCCGTATATAAT
TGACGTAGAGGCTGAGGTTGAAAAGAATCGAAGTATGTACATTACAACCC
AACATATAATGGATGCTGAGCAGAAGCAGGGCAAAATTGAAAGTGGATCT
ATCTTATTGATACACACAGGTTTGGATACAATTGTTATAACTTTTCTCGT
GGGTACTGGTAAAGTCGAAAATTCTACAGATATATCACCACGTTACTAAC
CGGCAAGTTGTCTAGCTTGACCCCCCTGCATCAATAGTTGTTTTTTagcc
tttttcacaaaattttatctTCTAAGAGGTTCTACCCCAGATTTCCAGGG
CAGGGCAGTATAATTTGTTCATCAAAATTTCCAGGGAGAGTTGGTGTCGG
TACTCCTGTttgaatgttgtttttttttggaataaccCATTAAACGAAGT
CCAAAACTACATATTCTTAATGAGGTGGAGATCGCCTACaataaaggtca
taatattttgataattttggttattttaacgttcttcaagatttaaagtt
ccggcgagaaagtcgattttgggctatctctttaatttaatcgaatattt
caattcggaaggggttggcagacttacaggctatattctgagccttattg
gactatttttgaacttttggatcctcagatcttaAGTTTCATATTAAaat
tcagagttaaaactctacccttccaacctactttagagcatttacaaatc
gcttgtggttcaaaaacttcccggtgtatttccctcttttctcaaatatt
atgaccttgattgtagcaAGAATTCAAATTTGTTCGGCGTAATGGTTTGC
TAAAATTTACTGTATTCTTGCTAGTCTAGCAGGACAGGCTATGCGTGATT
AGGgctattaaaggttttgttttgaataagaCTGATATCGTTTGCTGGCT
CATTAATTTTATagtacaagcttttttatattgaattgacacggatgtgg
atcaggattggtcagaaagagaaaaagaaaaacatttttcgcttatatca
gcataatataacaataggcagtcactgtcctgatatgaaatatgtgtgtG
ATATCAGACGGAAACActtattctaaaaataaaaccttagaTAAAACTTA
AAAGTTTACTATTTGTGTcctaattttcaggttttagcAAGAGAGTTTCA
AATTTTACTGACTATTATGGTGGCAACCATTCCGACCCATCAACTTATGA
TTTTCCTGGCATGACTGGGGAGGCTGCTCAATGGATCGTTGACAATCGAG
AGGTATAACAGAGAACTTAGATATTCGTAATCTTTGAACCCTAACCCAAG
TGTTAACACAAATGCAAGGTCTTGACAGATCTCACTACAACCTCGCAAAA
ACATTGCGCAATGAGTATCATAGATTAACAAACTTTCTCTCATATTTATA
GATTGCCTCCTTTGGCGTCGACACGCCATCTTTCGATCACGCCAAGGGCG
CCGATGACTGGTATCCAGTGCATCGAGTTTTTCTGAACAAAAACATCTCT
GGATTCGAAAATATGGATTTGTCCAAAATCAATGAATTTCGTGATAAGAA
GGGCGTCTTGATTATCGCTCTTCCGATGAAAATTGCGGGCGGAACGGGTG
GACCCACCCGTATTGTTGCTATGTATGATGACTCGGTGACAGTATCAGCC
TCGTTTTCGTACTGCTATGTTGCTATGGTATCAATCATAGTCCCAGTCCT
GGTTGCATTGGTTAATATGCTGTATTAAATGAAAGATTCAAAT

Coding sequence (CDS) from alignment at sc0000202_pilon:246359..251701+

>MSTRG.18607.2.p1 ID=MSTRG.18607.2.p1|Name=MSTRG.18607.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3705bp|location=Sequence derived from alignment at sc0000202_pilon:246359..251701+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATGAGAAAAATACACCTTACTATGGTATCTATAAAAGCCATTTCAAG
TTTCTTCAACAGTACGAATGAGCACGTGGGAACACACATTGATGCTCCAT
TACACTTCGTTAAAGATGGACAGACTGTTGATCAGATACCTCTAGAAAAA
TTAGTTGGTCCGCCGTATATAATTGACGTAGAGGCTGAGGTTGAAAAGAA
TCGAAGTATGTACATTACAACCCAACATATAATGGATGCTGAGCAGAAGC
AGGGCAAAATTGAAAGTGGATCTATCTTATTGATACACACAGgttttagc
AAGAGAGTTTCAAATTTTACTGACTATTATGGTGGCAACCATTCCGACCC
ATCAACTTATGATTTTCCTGGCATGACTGGGGAGGCTGCTCAATGGATCG
TTGACAATCGAGAGATTGCCTCCTTTGGCGTCGACACGCCATCTTTCGAT
CACGCCAAGGGCGCCGATGACTGGTATCCAGTGCATCGAGTTTTTCTGAA
CAAAAACATCTCTGGATTCGAAAATATGGATTTGTCCAAAATCAATGAAT
TTCGTGATAAGAAGGGCGTCTTGATTATCGCTCTTCCGATGAAAATTGCG
GGCGGAACGGGTGGACCCACCCGTATTGTTGCTATGTATGATGACTCGGT
GACAGTATCAGCCTCGTTTTCGTACTGCTATGTTGCTATGGTATCAATCA
TAGTCCCAGTCCTGGTTGCATTGGTTAATATGCTGTATTAAATGATGAGA
AAAATACACCTTACTATGGTATCTATAAAAGCCATTTCAAGTTTCTTCAA
CAGTACGAATGAGCACGTGGGAACACACATTGATGCTCCATTACACTTCG
TTAAAGATGGACAGACTGTTGATCAGATACCTCTAGAAAAATTAGTTGGT
CCGCCGTATATAATTGACGTAGAGGCTGAGGTTGAAAAGAATCGAAGTAT
GTACATTACAACCCAACATATAATGGATGCTGAGCAGAAGCAGGGCAAAA
TTGAAAGTGGATCTATCTTATTGATACACACAGgttttagcAAGAGAGTT
TCAAATTTTACTGACTATTATGGTGGCAACCATTCCGACCCATCAACTTA
TGATTTTCCTGGCATGACTGGGGAGGCTGCTCAATGGATCGTTGACAATC
GAGAGATTGCCTCCTTTGGCGTCGACACGCCATCTTTCGATCACGCCAAG
GGCGCCGATGACTGGTATCCAGTGCATCGAGTTTTTCTGAACAAAAACAT
CTCTGGATTCGAAAATATGGATTTGTCCAAAATCAATGAATTTCGTGATA
AGAAGGGCGTCTTGATTATCGCTCTTCCGATGAAAATTGCGGGCGGAACG
GGTGGACCCACCCGTATTGTTGCTATGTATGATGACTCGGTGACAGTATC
AGCCTCGTTTTCGTACTGCTATGTTGCTATGGTATCAATCATAGTCCCAG
TCCTGGTTGCATTGGTTAATATGCTGTATTAAATGATGAGAAAAATACAC
CTTACTATGGTATCTATAAAAGCCATTTCAAGTTTCTTCAACAGTACGAA
TGAGCACGTGGGAACACACATTGATGCTCCATTACACTTCGTTAAAGATG
GACAGACTGTTGATCAGATACCTCTAGAAAAATTAGTTGGTCCGCCGTAT
ATAATTGACGTAGAGGCTGAGGTTGAAAAGAATCGAAGTATGTACATTAC
AACCCAACATATAATGGATGCTGAGCAGAAGCAGGGCAAAATTGAAAGTG
GATCTATCTTATTGATACACACAGgttttagcAAGAGAGTTTCAAATTTT
ACTGACTATTATGGTGGCAACCATTCCGACCCATCAACTTATGATTTTCC
TGGCATGACTGGGGAGGCTGCTCAATGGATCGTTGACAATCGAGAGATTG
CCTCCTTTGGCGTCGACACGCCATCTTTCGATCACGCCAAGGGCGCCGAT
GACTGGTATCCAGTGCATCGAGTTTTTCTGAACAAAAACATCTCTGGATT
CGAAAATATGGATTTGTCCAAAATCAATGAATTTCGTGATAAGAAGGGCG
TCTTGATTATCGCTCTTCCGATGAAAATTGCGGGCGGAACGGGTGGACCC
ACCCGTATTGTTGCTATGTATGATGACTCGGTGACAGTATCAGCCTCGTT
TTCGTACTGCTATGTTGCTATGGTATCAATCATAGTCCCAGTCCTGGTTG
CATTGGTTAATATGCTGTATTAAATGATGAGAAAAATACACCTTACTATG
GTATCTATAAAAGCCATTTCAAGTTTCTTCAACAGTACGAATGAGCACGT
GGGAACACACATTGATGCTCCATTACACTTCGTTAAAGATGGACAGACTG
TTGATCAGATACCTCTAGAAAAATTAGTTGGTCCGCCGTATATAATTGAC
GTAGAGGCTGAGGTTGAAAAGAATCGAAGTATGTACATTACAACCCAACA
TATAATGGATGCTGAGCAGAAGCAGGGCAAAATTGAAAGTGGATCTATCT
TATTGATACACACAGgttttagcAAGAGAGTTTCAAATTTTACTGACTAT
TATGGTGGCAACCATTCCGACCCATCAACTTATGATTTTCCTGGCATGAC
TGGGGAGGCTGCTCAATGGATCGTTGACAATCGAGAGATTGCCTCCTTTG
GCGTCGACACGCCATCTTTCGATCACGCCAAGGGCGCCGATGACTGGTAT
CCAGTGCATCGAGTTTTTCTGAACAAAAACATCTCTGGATTCGAAAATAT
GGATTTGTCCAAAATCAATGAATTTCGTGATAAGAAGGGCGTCTTGATTA
TCGCTCTTCCGATGAAAATTGCGGGCGGAACGGGTGGACCCACCCGTATT
GTTGCTATGTATGATGACTCGGTGACAGTATCAGCCTCGTTTTCGTACTG
CTATGTTGCTATGGTATCAATCATAGTCCCAGTCCTGGTTGCATTGGTTA
ATATGCTGTATTAAATGATGAGAAAAATACACCTTACTATGGTATCTATA
AAAGCCATTTCAAGTTTCTTCAACAGTACGAATGAGCACGTGGGAACACA
CATTGATGCTCCATTACACTTCGTTAAAGATGGACAGACTGTTGATCAGA
TACCTCTAGAAAAATTAGTTGGTCCGCCGTATATAATTGACGTAGAGGCT
GAGGTTGAAAAGAATCGAAGTATGTACATTACAACCCAACATATAATGGA
TGCTGAGCAGAAGCAGGGCAAAATTGAAAGTGGATCTATCTTATTGATAC
ACACAGgttttagcAAGAGAGTTTCAAATTTTACTGACTATTATGGTGGC
AACCATTCCGACCCATCAACTTATGATTTTCCTGGCATGACTGGGGAGGC
TGCTCAATGGATCGTTGACAATCGAGAGATTGCCTCCTTTGGCGTCGACA
CGCCATCTTTCGATCACGCCAAGGGCGCCGATGACTGGTATCCAGTGCAT
CGAGTTTTTCTGAACAAAAACATCTCTGGATTCGAAAATATGGATTTGTC
CAAAATCAATGAATTTCGTGATAAGAAGGGCGTCTTGATTATCGCTCTTC
CGATGAAAATTGCGGGCGGAACGGGTGGACCCACCCGTATTGTTGCTATG
TATGATGACTCGGTGACAGTATCAGCCTCGTTTTCGTACTGCTATGTTGC
TATGGTATCAATCATAGTCCCAGTCCTGGTTGCATTGGTTAATATGCTGT
ATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.18607MSTRG.18607Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18607.2.p1MSTRG.18607.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18607.2.p1.exon1MSTRG.18607.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18607.2.p1.exon2MSTRG.18607.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18607.2.p1.exon3MSTRG.18607.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18607.2.p1.exon4MSTRG.18607.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18607.2.p1.exon5MSTRG.18607.2.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000202_pilongenomesc0000202_pilon:246359..251701 +