MSTRG.18603.2.p1 (mRNA) -

Overview
NameMSTRG.18603.2.p1
Unique NameMSTRG.18603.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000202_pilon:203742..210442+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.18603.2.p1 ID=MSTRG.18603.2.p1|Name=MSTRG.18603.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6701bp|location=Sequence derived from alignment at sc0000202_pilon:203742..210442+ (Clytia hemisphaerica_ch_hm2_pilon)
GAGGAACAATCATGTCGAAacctttgaaagaaatctcaGACGATGTTTAC
CGGCGCGCACTGGAAAAATGTTGGGCGGTAAAGTTGGACACACAGAAAAC
CTTCCCTACACTAATCGATGAATGGATAACAGTGGAGAAGAAAAAACTTG
GAGTTCCGTATTCTTACCTTGCATACCCACTTCTAACGAGTATATCATAC
TGTCTCGGTGTGAGCAGAGTAAAACTGGCTGAATCGTACCAAGAACCCGT
CATCCTTTACTCGTTGGTATCAGGCAGAAGTGGTACAAATAAATCAAGCT
GTGTATCACTTTTCCGAAATATCATCAACAAGATTGAAACAAATGAGCGA
GATGATAAACAGCACATCTTTGACAGTGGCACTATCGAGGGTCTCATGAC
CACACTTCATGAGAACAACGGCTCCGTTTTATGCGCTGTAGACGAGTTTT
CCACATTCTTAGATGCAATGGATAAAAACTCAAATGGAAATGTCGAACGC
TCAAGGTAACTTTTTACTtagttttgtaattttaagATCCCATATACCTC
ACCGTCAAATATAGGTAATACGCACTCCAATGGAGAACCTAAAATCTTAA
TTGTGTTCGCACGGGTTTTCGCATAATCTCAGTTAGTATTAGACCTGACA
TCCGTATGTTCAATTTTAAcgtttatcttttgaaaatagctCTTCATGTA
ATGGTATATGAACATAAGATACTTTTATCTTTAGATATCTATCTCTTTGG
TCCGGTTCATCATGGTCAAAAAAGACAAAGCACGGCGGAAAGGTGGAAAT
TGAAGACCCACGATTCAGTTTTTATGGGTTTAACCAAAACTACTTTCTTA
TTAACATGATCGTTAACAGCAATCATTTTGATGGATTCCTGCCAAGATTT
TTGGTCGCTACTTCTGAAGAGGAGTATGTTCCAATAACGGaaaaaaaTTG
CAGCTTCGAAAACAAAAGTTCCACTCTGTATCCAGAATTtgtttgacaaa
attttcaaacacttttACTATAAAGGTCATGTTTTTGAGCTAGACACTGA
AGCATTTACTTTGTTTGCATcatatgatcaaaaagttttggaCTTCAGAA
AGGCAGATGTGTTCGAAGACATGAAATCAATGATTATGTCCAAAAGTATC
GGTAATGTGCTGAGAGTAGCTGCTCTCCAGTGCGCACTACGCGTTGTTAC
CTCAAACCTCGATGCCGATGACTTATCAAATCTGGATTTCACAATTGGGA
TGGTCGACATGGAACGAGCCATCACGTTGGTAACGTATTCGGTTAACTGT
TTAATTGCATTGATAGACAGCACGAAAAATACTTCACGAAATGGAAGGAA
ACGACATAGCGAAATGCCTTTACCTGAAGTAATGGATGAGGAGTTTCTAT
TGGTCCACAAGGCGAAAATCAAAAAGATCTTCACGCAAAATTCAAAGATC
GTACCGGTTTCATCCATCACAAGAAATCACATGTGTCCTCAAATAGGTGG
GAAAAATGGTTCAGAAGAAGCTAAACGTTTTCTAAAGGGGTTAGAGTTGA
ATGGTCTTGGTAAGCTGTCAGTGGAGAATGATAAATCAGTATTTATTGTA
AccgataaagaaaacattgaaaatcaGATAGTCTCAGATTTGATGACTAA
ACTCGATCTTTGAGTCTTATACATTATCACACTTAATATTTATGGtttga
ataattaaatttttacgtgtttggatgatttttaaatttggcagTTAATG
ATGTTTTAAACATTATCTTGTACTCTgccttaatttcaaattttgggtTT
TAAGGTTAGGTTGACCAGATATTTATggaaaaattcagttttttctcCAC
ACATCCATATTTGTATTtagtcaaaatcaaatcatataATTGTATTTATT
CTTCAGATGTTGAATTCTAATTATTATTTGTATATTTTCCAATAACTTAT
TAATCACATCCTTACTTTTTTCAATGAATTACTCTATCcaccatttaaaa
aaactcatataaaCCGTTTTGGGTCACATCTATACATCATTTGATTTTAA
GTTTTGATTTGACTTTAAAATTACAAGAACAAGTAGGTTTTATTGACTTA
ACCTTTACCTAACACATGTATTATTGACACCACCAGGCCATTTCAGACTT
TATAGTATAATAGCTCCTATCACACGCGAAAGGCTTGCGCAGTGcaaaca
ctgacctttatataccctggaccaagcttctcaatcccagccaagcaaag
tctttgatcggagttttttgaaaattgataccctaatggcggcactactc
gatagcggtgtaaatgcatcgagagcgctaggtctacttttcctcgaatt
tattttatgatgtagcggcgttagatgttaatttttaacattgcaatggc
ttttcctcgggtaccaattccaaaaaaactccaatcaaagatggcagata
tttttttttttcggtcaaaaaatcaaagatggcagatattgcttggtcca
gggttatataaaggtcagtgagtgCAGCATTCTTTACCGCTacgccgaag
tcgcgaaggcCATTTCAGACTTATAATAGCTCTTATCACACGCGAAAGGC
TTGCGCAGCGCGCAACGTTCTTCGCCGCTACGCCGAAGCCGGGAAGGCCA
TTTCAGACTTATAAAAGCTCCCATCACACGCGAAAGGCTTGCGCAGCGCA
ACGTTCTTCGCCGCTacgccgaagtcgcgaaggcCATTTCAGACTTATAA
AAGCTCCCTATTCACACGCGAAAGGCTTGCGCAGCGCAACGTTCTTCGCC
GCTacgccgaagtcgcgaaggcCATTTCAGACTTATAATAGCTCCTATCA
CACGCGAAAGGCTTGCGCAGCGCAACGTTCTTCGCCGCTacgccgaagtc
gcgaaggcCATTTCAGACTTATAAAAGCTCCTATCACACGCGAAAGGCTT
GCGCAGCGCAACGTTCTTCGCCGCTacgccgaagtcgcgaaggcCATTTC
AGACTTATAAAAGCTCCCATCACACGCGAAAGGCTTGCGCAGCGCAACGT
TCTTCGCCGCTacgccgaagtcgcgaaggcCATTTCAGACTTATAAAAGC
TCCTATCACACGTGAAAGGCTTGCGCACGTCAAATACGTGCGCTAACTGC
GTATACCACGCGAGGGCCGGCGATTTACACAAAAACTTCGGCGCTGCGCA
TAGGCTTCGCAAGGCAACATTTAAATCTTATTCAAGTTCTTACTTTCGCA
GCTTCGGCGCAGCGGCGAAAATCGTCGCGCAGCGCAACCTTTAtcgcaag
aaaatatttaatcttatttaagttttttaccttcgcaGCTTCGGCGCAGC
GGCGAAAATCGTCGCGCAGCGCAACCTTtcgcaagaaaatatttaatctt
attTAAGTTTTTACCTTCGCGGCTTCGACGCAGCAGCGAAAATCGTCGCG
CAGCGCAACCTTTcgcaagaaaatattaaatcttATTTAAGTTTTTACCT
TCGCGGCTTCGACGCAGCAGCGAAAATCGTCGCGCAGTGCAAccttttgt
gaaatattgacATATCTAATTTTTATTCACAGattagaaacatttttttt
caaattattgagaCCTTTAATATTTACCACGATTAATGAGTAAAAACATT
TATCTTAAATTTTTATATACATCCCTAttcataaatttaaaaatatagtt
ATAATATCCcaatattgtaatttttaactcTTCCAACATCTTCATTAATT
ctttataccaaaaaaattaaacaatttaTAATTAAAACACACCTGCAACT
AAAAGTGAACGAAACACtcgtgaaaattttgaattatacAGCTTTAATTT
AACATCTTTTTTAACCATCTCAATAACTTAACTTTTTAGAAAGCCTGGTG
TTATAATTGTCATCCAGTAATTTCAATAAACATAACCTCTTTGCATATGT
CATATTCCTTGTGATGTTTTTGTAACAATTCAGTACATGAAATGTTTGCT
CACAGACTTCCGTATTCATCTTACGCACATCCTTAAATTTAGGAAGATCG
GGATGGTATTTACAGTCGTCACTACTGAGCACGCATTTCGACTGCGTGTG
TTTCTCAGCATGAAAAACGTCCACAATAAACATTAATTCTTCAATTTCCT
TGGCAAAAACATTCCCTTCCCTTGCTAATCTACAGACGTACGGGTGTAGA
TCACAGGATCTATCATAAACTGTACCTTTCAAGTTTCCATTAAGATTTCC
TTGAAATATATCAATTAACCCTGTAAACACCATTGATAGACTTTCAGCAG
TATACATTTCAAAATGGGACAATCGAATGCCGCATGATCTAAAAACATAC
AACATACCAGCAGTCCGTGTCTCGTACTTGTTGCAATTCTCTTCTTTCTT
GCAACCTTCTCCACTTGTAATAACATTCTCCAATAGCTTTACTCTTTGTC
TAGTCATAGGATAAAGGTCtaatctttcatttttgatttcatttttcatc
tctcCTGACTCGTTAGAGTGGATGTGGCATAATTTGGATCCTTTTAAAGA
TTGATTTCCTCTAACCGGATTATTTATACAACGAACAACTTTGTTAACTT
CTCCTATCTCATGAGGCAACTTAGTTATCGGTTTAGCGCAACAATATCGA
TACAATTTTTCGTTTCCGTCGATTACAACCATCTTATTCTTGCAACCTAT
AATTTAGAAAAGTcattattttgattaattttgaaaaaccccACTGGGAA
ACAATTTAACCGGGATGCTGAGACCAGGGGTGTaatagtcattttttcaa
tttaagcCTACACATATAATGATAAAATGAATCAAGTTCAAAATGTATCC
GAATTACCTGTCTCGTTACATTCGTGTGAAAACCATTTTTGATcgattac
tttttttttttcaaggttggATACACATCTTCACATATCTTTTCAATATC
GAAATGTTTATTGTGGTCCTTTCTGTGCCATAACATTGTGGGGCAAATGC
TTATTAGTCGTTTTATGAGCCAATGATTTTCGATGACTTCGGCAATCAGT
TTCTTTGTAGAGTCATCAATTCCAAATTCAACATTGTACATTTCGGAAAT
CTTATCAAAACTTGTAGCACCAATACAAATCTGTAGAGAAATCCTCTCTA
GATATCGTGTCGTAAAAGCTATGGATGACGTGATCATAAAGTAGTCATCT
CCATCTGTTAGATACGTTCGATATCCATCTTTATTTTCTGTCCAGTGTCT
GTAAAACTTCGTCTTACACGTCTTACCCAAACCATGGTAATTCAATCCAT
CAATAATGCCATTTTCAGTGTAAATCCTTACTTGGGATGCTCTAGGGTTA
ATCCTGATCTTCTTCGAGCAACAAGTAGTGGTAATTGGGATAAATGCTGG
CTGCTCCATGTATTCGCTGTTCCCTGTTTTATACCTAACCATACAGGTGC
TGCAGTGTAGGATATGACTTTCGATTGGACGAAAATAAACTTCACCATTT
GGTAGGTCAAGGTCTACTAATACCTGTAGATTACTGTCACTTAATGTGGT
TACATACGATTGCAAAGTCTTCGTTATGTATTCGATTCGGTGTGGAGTGC
GTAATGAAACATTACTAAGTAAATTCTGTAACACTTTCAATACATCAATC
CGAATAATCATCTTCGCGCCTCCCTCGCGCCTCTTAACTTTTCTCCGTAT
CTGCTTCCAAAAGGTTTGTactcaaacaaatttttcttttgtacataatt
tgtttcataaaaaactgaCGTTACAATAAATCTTTCAAGAAGACAATGCA
ATGGCtttttttAGTTGTGACGTCGGATTTTGATTTTGGGAGAACATTGC
ATTGCCATCTTTAAAAATTAGAAACTTAACGGTCATAAATTCATTTCACC
TCAATCAACACTCGAGGAACAATCATGTCGAAacctttgaaagaaatctc
aGACGATGTTTACCGGCGCGCACTGGAAAAATGTTGGGCGGTAAAGTTGG
ACACACAGAAAACCTTCCCTACACTAATCGATGAATGGATAACAGTGGAG
AAGAAAAAACTTGGAGTTCCGTATTCTTACCTTGCATACCCACTTCTAAC
GAGTATATCATACTGTCTCGGTGTGAGCAGAGTAAAACTGGCTGAATCGT
ACCAAGAACCCGTCATCCTTTACTCGTTGGTATCAGGCAGAAGTGGTACA
AATAAATCAAGCTGTGTATCACTTTTCCGAAATATCATCAACAAGATTGA
AACAAATGAGCGAGATGATAAACAGCACATCTTTGACAGTGGCACTATCG
AGGGTCTCATGACCACACTTCATGAGAACAACGGCTCCGTTTTATGCGCT
GTAGACGAGTTTTCCACATTCTTAGATGCAATGGATAAAAACTCAAATGG
AAATGTCGAACGCTCAAGGTAACTTTTTACTtagttttgtaattttaagA
TCCCATATACCTCACCGTCAAATATAGGTAATACGCACTCCAATGGAGAA
CCTAAAATCTTAATTGTGTTCGCACGGGTTTTCGCATAATCTCAGTTAGT
ATTAGACCTGACATCCGTATGTTCAATTTTAAcgtttatcttttgaaaat
agctCTTCATGTAATGGTATATGAACATAAGATACTTTTATCTTTAGATA
TCTATCTCTTTGGTCCGGTTCATCATGGTCAAAAAAGACAAAGCACGGTG
G

Coding sequence (CDS) from alignment at sc0000202_pilon:203742..210442+

>MSTRG.18603.2.p1 ID=MSTRG.18603.2.p1|Name=MSTRG.18603.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1110bp|location=Sequence derived from alignment at sc0000202_pilon:203742..210442+ (Clytia hemisphaerica_ch_hm2_pilon)
GGAACAATCATGTCGAAacctttgaaagaaatctcaGACGATGTTTACCG
GCGCGCACTGGAAAAATGTTGGGCGGTAAAGTTGGACACACAGAAAACCT
TCCCTACACTAATCGATGAATGGATAACAGTGGAGAAGAAAAAACTTGGA
GTTCCGTATTCTTACCTTGCATACCCACTTCTAACGAGTATATCATACTG
TCTCGGTGTGAGCAGAGTAAAACTGGCTGAATCGTACCAAGAACCCGTCA
TCCTTTACTCGTTGGTATCAGGCAGAAGTGGTACAAATAAATCAAGCTGT
GTATCACTTTTCCGAAATATCATCAACAAGATTGAAACAAATGAGCGAGA
TGATAAACAGCACATCTTTGACAGTGGCACTATCGAGGGTCTCATGACCA
CACTTCATGAGAACAACGGCTCCGTTTTATGCGCTGTAGACGAGTTTTCC
ACATTCTTAGATGCAATGGATAAAAACTCAAATGGAAATGTCGAACGCTC
AAGATATCTATCTCTTTGGTCCGGTTCATCATGGTCAAAAAAGACAAAGC
ACGGTGGAACAATCATGTCGAAacctttgaaagaaatctcaGACGATGTT
TACCGGCGCGCACTGGAAAAATGTTGGGCGGTAAAGTTGGACACACAGAA
AACCTTCCCTACACTAATCGATGAATGGATAACAGTGGAGAAGAAAAAAC
TTGGAGTTCCGTATTCTTACCTTGCATACCCACTTCTAACGAGTATATCA
TACTGTCTCGGTGTGAGCAGAGTAAAACTGGCTGAATCGTACCAAGAACC
CGTCATCCTTTACTCGTTGGTATCAGGCAGAAGTGGTACAAATAAATCAA
GCTGTGTATCACTTTTCCGAAATATCATCAACAAGATTGAAACAAATGAG
CGAGATGATAAACAGCACATCTTTGACAGTGGCACTATCGAGGGTCTCAT
GACCACACTTCATGAGAACAACGGCTCCGTTTTATGCGCTGTAGACGAGT
TTTCCACATTCTTAGATGCAATGGATAAAAACTCAAATGGAAATGTCGAA
CGCTCAAGATATCTATCTCTTTGGTCCGGTTCATCATGGTCAAAAAAGAC
AAAGCACGGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.18603MSTRG.18603Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18603.2.p1.exon1MSTRG.18603.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18603.2.p1.exon2MSTRG.18603.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18603.2.p1MSTRG.18603.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000202_pilongenomesc0000202_pilon:203742..210442 +