MSTRG.17754.1.p1 (mRNA) -

Overview


Name	MSTRG.17754.1.p1
Unique Name	MSTRG.17754.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000182_pilon:690930..699726+
coding sequence from alignment at sc0000182_pilon:690930..699726+

mRNA from alignment at sc0000182_pilon:690930..699726+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.17754.1.p1 ID=MSTRG.17754.1.p1|Name=MSTRG.17754.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8797bp|location=Sequence derived from alignment at sc0000182_pilon:690930..699726+ (Clytia hemisphaerica_ch_hm2_pilon)
tcgatttcgatctCGAAAATGATTATTAATGATTTTTAATGCATAATGGG
GGAAATGAGCACGTGGTGTCTTGGTGAGTTTTCAGAGCCTCTTTGCTCCA
catttctgttttattttttttagttatCATATTATAGATTGATTTGTGAG
AAGTATTTTTACTTGCAATATCATGCCCTTGCAaacaatgggctattcca
tttttaaaccatacaggggtattgacgaacttttccaggggggtcTGAGC
CTTAATTTTCCAAGGggcttttggtcattttcagattttccaaggggtta
aTTAAtggtttccagggggttctctcctcctaaactggcatcaatagtca
ctttccaggccctttttcacaaaatttcactttccaggggtgtcgactcc
taatttccaggggatagtttgttatccaaaatttccaggggggttagtga
aaaaagttcgtcaatacccctgtacaatttttttttggaatagcccaatg
cTCTCAGTACAACAACCGCTGGTAATaaaccagacgtccgcgctcgatag
gatcgatcatcggaacggcttgatgacggatcgatatgtgattgatggat
tactggataggagatcgatagaggatcgatactcaagatttttttaagct
tgtgattacttatcgattatagaccttttttcaaaaagaggccaccctgt
caGTCAGGCaccacatcctggcaaatgagcggggtatttttcacttgcga
ccacttgcgaccattggcaaatgaacggggtcgaaaacgaaagtgacgta
atagcgccggacacccagtttaattgaaccgggttggaaatattttgctt
catttcaaagaactgcatagatgaaattttttttccatgggtcaattttg
tctttgaagattgaagaaacttttaacgaaaaaataaagttcctagtttt
cttccttttttccctttttcagtttgaagttcatttttattcattttcaa
cattttagcctgagacgtcctatctcatttacactgggtgacgaataccc
catgcaaatgctcaccccgttcatttgccaggatgtgcctgactgcctGT
TGagtaattatgtagtccagcagaaaaacaatgataaaaccatgcataat
tattacaatatgcatgatacagtaagtatgcatggctctatcattgtttt
tatggctggactacataattattcaacaggacatcctctttgaaaaaagg
tctatttatcgATATCATCGATCTTGTTTTATcaatcttatcgaccctat
cgactcatactcgatttacgatcgataacaaatcgattaacgatcaatga
cgaatcgattaacgattgatgacgaatcgattaacgattgatgacgaatc
gatatgctcgattgaaatactagcttgataatggatcaacgaaggatcga
tactcaagactttttaatggctgaatcttccatcgatctcctatccggat
cgttaagtaatacATTGATCatatatcgatccgtcatcgagccgttccga
tgatcgatcctatcgagcgcggatgTCTGGAATAAAAAAGTCATTGTCAT
TTTCCAGGCccttcagttaggaacatttggcgagttcctgtagcTGTACA
CGgccggccgcaatcaaaaaaatcataacgtcactcaataaaaaatggcg
ttcgtgtcttttcccactttttttagcctagatgATGTAGccaacatagt
aagtataagcacactgtgcttataattggctgacaatttcTTCCTCTGAG
GACAAGGTTGGGTTTTCCAATCGGAAGGCACTGCattgcaaaacgttcga
aaattgtcaatcgaattttgtttttaaaacgcaGAACAcaattacgtcaa
aaaagaaagaaaaataacacaaaaatcaaatcaaaacaaaaaaaattaca
agtgaaaaaaataaagtgagaTAGGGACGTGATGATCAAActgattaaaa
aagttttcttgttaTATATCTATCCTGGCTGATCCGAAATATGGGATCTA
TCAACAGAAGAATAGCTACTGtaaagctgttttttttttcgagtgcAGTC
AGTTGCTGAAATTCAGAAGTTCTGCTGTGCTGCTAGTGCtagacaaaaat
atttagctGGATATTTTGTTGTGGTTTGAAGAATAAATTAAGACAGAGAC
TTTGAGAAAGTCTAGATCTTTGATGAGGGTGAATACTTCTAATGACACCC
atagccagacgatctcaatcgaacggaatcgacgatcgaaccaatcgaac
caaatcgaacgcaattgaccgattgaaattcgattgtcgaacgcaatcga
atctcaatcgaacgtcaaaattctgggtaatattcgattggtttgattgt
tgttcgactggttcgatcgtcgattccgttcgattgagattgtctggctt
tattcttgcagcttcccaacatccaagctctcaaacatcacaagaaagaa
aaataacacaaaaatcgaatcaaaacaaaaagaattacgagtgaaaaaaa
taaagtgagaTAGGGACGTGATGATCAAActgattaaaaaagttttcttg
ttaTATATCTATCCTGGCTGATCCGAAATATGGGATCTATCAACAGAAGA
ATAGCTACTGtaaagctgttttttttttcgagtgcAGTCAGTTGCTGAAA
TTCAGAAGTTCTGCTGTGCTGCTAGTGCtagacaaaaatatttagctGGA
TATTTTGTTGTGGTTTGAAGAATAAATTAAGACAGAGACTTTGAGAAAGT
CTAAATCTTTGATGAGGGTGAATACTTCTAATGACACCCatagccagacg
atctcaatcgaacggaatcgacgatcgaagcaatcgaaccaaatcgaacg
caatcgaccgattgaaattcgattgtcgaacgcaatcaaatctcaatcga
acgtcaaaattctgggtaatattcgattggttcgattgttgttcgactgg
ttcgatcatcgattccgttcgattgagattgtctggctttattcttgcag
cttcccaacatccaagctctcaaacatcgcAAGCTGAATGAAATTAcgtt
cgatttcccgtagaaattatgcgatgaacaatccgggggtcaattaattg
acgatcgaacgcaatcgaatgcaatctaacatcaatcgaatgcaatcgaa
tatcaatcgaatctgaaaattgcggtaatattcgattgagattcgattgc
gttcgacaatcgaatttcaattggtcgattgcgttcgatttggttcgact
ggttccatcgtcgattccgttcgattgagtcTGGCCATAGCCCTGATGCA
AATGTTTCACTCGATCCAAATACTCAAAATTTGCTGGACCTGGAGGAGTT
GGAGAGGAAATGTTTTAGATTGGATTAACTTATTACACTTGACACTACAG
TATATACAGTTTGCGATAAAAAAGTTAGAATATTTACTTCCAGTAATAGT
GATCCATTCTTGGCTTGTTTGCTGTGTGTGTCAGGAACGATGAAGTCTTG
CAAAAAAGGGTAAGTCgtttaatattttaaaattacaGCTGGCATGAATG
AATAAAATCGTCCAGCtttttttATCCCAAatggaatgaaacttttctCC
GTTTGAAGAATTTCTATGGGCCCTATTCCTCACCAACCTTTTgaaggtac
agtctgtttatcgCAACAACTCATGctaaatttaaaatccaatGAGTGTG
TTCCATCTTGCTTCATAATAAAACTGTTTCTTTAAACTTATGctgttcat
ttttgaaaatgaaaaatagggaTGGTTCACTCTTCATCCTTGAAAGATCA
TCtggagaatttttttatgaagagaAGGAGtataaaacgttaaaaaaatt
tctcgtTTGTGGTTTAAAAGAGCCTGGTATCTCAGGGTCTTTTGTCTTCA
TCATAAAGtatgaaaatgttatcaaaagggACTGAAAAATTGCCCTCGCT
GATCTGACCTGTACGTCAGTTAGGTACAATTGCAAGGAAAATCTAGTTAA
GTTAGCAAGCTTCCGCCTTATCATTTCTcacaatttttctgaaaaagcaa
atCAGACATGATCCGCAACCTCCTCTAAGCCAAACGAAGCCAAACGGTGA
AATATATCTACTTTACGAgcgtttttctacaagatcttgtattaaaaaaa
aaaacttcgtcTTCACAGCTcgaatttattcgcgctgtgatactcacggt
ataACTTCTAGGGGATAGttttttatccaaaatttcaaggggggttagtg
aaaaagTTTGTCGATAGACTTTTTCGCCTTTTCattcgccatcttgaatt
gtatgcaaaaatacaggaacaaaaaagccgtggttggatttagttggaaa
ttATATGCAagttcagttaggaacatttggcaagTTCctgtcagtataga
cctaactcttcatacaaaaattacgggaaacgcatgtttggactttatac
cctatgctgcacgcaatgcaagcacttaagccaaagtcctgcaaaggtgg
gacaaaaatcagttttttgaagtttgcaaaaaaacgccacatagaagatc
tttcaatttcagtatgtgaatagagcagtaaaaaatacaatttttctatt
tttccttttttttgcaaaagttctaggctggaatgaaaataaagggataa
tgattatttaatactatccattgatgatccgcggcaatatcgtaaagcta
gaatcgctttgcgtactcttcgcttgagaaaaggattgacagattgaagt
atTTCACCCGCGTGGGCGTTCtgcgagcgttctcggctcaatcctcggac
tgcgttaaaaatggtagactgagctgtgataagatcattttgatgaaagt
tgttggaatgtttacaaggctcttgacagaaaatcgtttgttttattgtc
aatgatgacagtgcggttattaattttgttagatctgacaaattgatgtt
tgtaagtgcactttatagttttgattcccattgaagaatcatattctggt
tttcatgttattagatgctgttttagagctagcctgcctGTACGCGACGG
cgatcaaaaaaatcaaaagcatactcataaaaaaattacatttagtgtcg
ttttttatcgttttttgcCTAGACGATATAGCAAATATAGTAAGTAAAAT
TCGCTTCACAATAAGtagactgtgcctttaattggctgtaaaaaaattct
gcattggtagaaatttctccaactttcaacaatAATAGAACACActtatt
taaacaaaattaaccagcgcattttctatctttctacttcttcataTTCA
ATGAAGCTCTGaaagtcaaatagaattaagcacatTAGATATTTTTATAA
CTGTGAAATGCTGTTTGCGCTTtcgctacggtggagtgcatgacgtaact
cgcgctgcaacaaactcgccttctgttgactgatcatattgggcgttttg
gcgttactaCCCTTGAAGCAGTGGTTGCCTTTATCATTCCGCAACTccgt
ccaccattttaaatgagttaacaatagatccaaaagggcgccctcaTCAA
GGAATATAATttgctttggtctccggctttagGAAGCagtaatgtttttg
gttgttttcgatggaaaattgtaagaaacttaagtttacaattaACATTA
AGTGATAGAATAGCAGAATcatggatggtttccctaaaactgaagtttac
acaaagattaaaaagacaacaaagcatcttataaagaaatattattataa
tcattagaacaataaaaaatttcttaatccaaaaagaaatatttacagaa
caacaaaagacatattctgttttcatgccattaaaaaattccatggAGAC
AAGACAGAGTTCACAcattaaactttcaaaaatacgcaaactgaaagcag
aaatgatgacgtcacacattctttCCCGTGCAGTAAAATATTAAAACCCC
CATTAAGGTCAAGCGCAACATGTTAGTAAAAGCAGCTGTAAATCAGGGGG
TTCAgatcaaaatgttttgatttgatcatttggtgGTTCTATTCCCATTT
TTGTACCTTTGCTGTTGATTTTTCATCTTGAGTTTATATCTAATGTCAAT
TTaatctaatgttatggttttttgaagtgcttgttctaagagatgagtga
atgtGATTATTTctagtaagttttatattaacactttctttttgcatagg
ttttgcaaattttcaatgCAAGCTCACCACGGCAATTTGTCCACTATAAT
TGTTGCATttaattcaatatggcggatggaaaggtcAAAAGGTCTATACC
CTGTACAATTTTGATGAGAGCGAATGAAGCCAGGGAATTGAATCAATCGa
ccataatcgaatacaatcaaacgtaatcgaagcaattaAACAGCAAATCC
TGGTTAATATTTGATTACGATTTTGTTCAATTGATTTGGCATTCGATTTG
TTTGATTAACATCGTCTGGACAGTTGGCATTGAATCTATCAGCTGTCTAC
GTTCACTTTCAGAATAATATTTTTGATGGCTTTTTGATTTGGTAAAAAGA
CACTATCATTGTATTGTTTCAGCTGTTTCAGACCATACTCTCTAGTTGAA
AGCAAATATTAAAATCATTATCTAAGTCAAAGTGAGGTAAAGTAAAAAGA
TTACTTGAAGAATCTTTTTGGTATAAGCTTCAAGGAATAACTGATAcccg
tttttttataagaacaagataTATAAGAGCATATGGCTTCGATCGCCAAA
AtgtaaagaacaagttaagaatattttgaggCTTTATGGACACTAAAACA
CTCCAAtgtcttaggaaattgcacaaaaatacttacaaaatagtagtgaa
attaagaacatttttctaaggtttaaaactcaaaaagttaaagcaCATCT
GAAGGCTCGAAAAGTTTTGGGTGCTTATGAAAGACTTACATTTTATTAGT
TATTTTCATTACTAatgtttcaaaatgttcttattattttaatagttata
tttcaaaatgatgtCAATAAAAATAGTACCAAGAACAATGAAAAATCGAC
GTGAATTTCGAACATTAGCACGTGATAATTGTGGTGAATCAATGGAACCT
GGTGAAAATGAAATCATGTATTTTGGTTACCCGGCATCagatgaaaaaca
aaaaggtatttgaaataaaattgaataaaaattgaatgATAATCATCACT
GAATTATCGAATTgttaaagttttagaaaaaagtttctcctatgatttct
taaaattgaagaaatattttgataagGTGTAAGCGTCACTTTTTCAATAT
ATCCTTAACGGGATGGGGTCCCGTAAGGTTTTCGACCCCACCCCCGTAGG
GCCTTCCCGtaaacttttcaggacttcggacCAAATTGCTAACGACGCAT
ATGTAAAATATTGTTGTTTAAACATATGTTATTCTTATAAGCGAGCGGTC
TTTAGGGTGCAAATGTGTAGTTTATTTAGTTTGAAGAGTATATAACTTAT
GAATAGGCGttgtgttattatttttttacgaGCCTCATTTATTTTCTCTT
CATATTTAAGGTCTACCAATTGCGTGTGCTAGTTTGTTACCCTGCAATAC
GAAATGCAACGATTATCAACAACGAGATTATTATCACTGGATTACTTATA
TTTTCGTACACGAACGTTTCAAAGGCGAGGGGTTTGGGACACAGCTATTA
CGTCAtgttcaatatgatgcttgGCAGAGTTCTAAACATCCCATAAGAGC
TGATGTTGCGCATAAAGCGGTACCGTTTTTTGAGAAGAATGGTTATTTTG
TTTTTGGTGATGTATGGAGCCCTGCAGCTGGGAGTAGATATTTTCGTCGA
TTGCACCCGATGCAGCTGGACTTTCGAATAGTTGAGAAGGAAGAATTATG
GGATTCTTGATTTGATGAACGAAAAGATAAtcaaggaaagaaagaaacga
tgAGAGtttttttGTGACTTCCCAAGAAGGAGGAAATGTTTTGAATCTTC
CGACATAATCTTCCGACACATCTTTTCCTAAATTATATTGTATCTTCAAT
GTTAGAAAAAAGTGGTCGGTGATCGAATGTCTCAGCTTAGAGTGATTTAT
CAATCATTACAAAATGGTTACAAGAGGAGAAATCATAGCACCATTGAAGA
GAGATTATGATGAAAATAGAGTAAACAACTGATAACAATCTTTCAACATT
ACTTCCATTCTGTGCCTACACCAATTCGTAACAATTGACTATTTCTTAAA
GACAATGTCATGCTCAATAATTAAAGGTCCCAGCATCAATgccaaaattg
aaaagaaaatattcattACATACTTTTACTACCTTAAGTGGAATAATTTT
GGCGGAAATTAAATCcctgtaaaattttcaaaaaccgaTCACTCGCTAAA
TTAATTCTCCGCCAAATTTAACGaaaaaaaTATtctgtgaaaaatcacaa
ctttttagtatatttcatAGTAATTTTCACCCATTTCAATATCGCAAAAT
TTTCAGTTCGCCAAATTAATCCCCGCCAAATTTTACGAGGTTTAACTAGT
ACTTATTTTGATTTGTTTTGCACATTGTGGCTTCAGGGAAATAAGATATG
CAATCAAACTACACTGTAAGGGCGAGAAACGTTCGGTAAAATACACGTGT
AAGGGTACCTTTTCACTGCTTAAGAGCTAGCACTACTGTAAGAATCTGAT
TTTGAAAGCCAATTTTTTGGCAGCATGGCCGTCGTTTAGAAATCGAG

Coding sequence (CDS) from alignment at sc0000182_pilon:690930..699726+

>MSTRG.17754.1.p1 ID=MSTRG.17754.1.p1|Name=MSTRG.17754.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000182_pilon:690930..699726+ (Clytia hemisphaerica_ch_hm2_pilon)
atgatgtCAATAAAAATAGTACCAAGAACAATGAAAAATCGACGTGAATT
TCGAACATTAGCACGTGATAATTGTGGTGAATCAATGGAACCTGGTGAAA
ATGAAATCATGTATTTTGGTTACCCGGCATCagatgaaaaacaaaaagGT
CTACCAATTGCGTGTGCTAGTTTGTTACCCTGCAATACGAAATGCAACGA
TTATCAACAACGAGATTATTATCACTGGATTACTTATATTTTCGTACACG
AACGTTTCAAAGGCGAGGGGTTTGGGACACAGCTATTACGTCAtgttcaa
tatgatgcttgGCAGAGTTCTAAACATCCCATAAGAGCTGATGTTGCGCA
TAAAGCGGTACCGTTTTTTGAGAAGAATGGTTATTTTGTTTTTGGTGATG
TATGGAGCCCTGCAGCTGGGAGTAGATATTTTCGTCGATTGCACCCGATG
CAGCTGGACTTTCGAATAGTTGAGAAGGAAGAATTATGGGATTCTTGAat
gatgtCAATAAAAATAGTACCAAGAACAATGAAAAATCGACGTGAATTTC
GAACATTAGCACGTGATAATTGTGGTGAATCAATGGAACCTGGTGAAAAT
GAAATCATGTATTTTGGTTACCCGGCATCagatgaaaaacaaaaagGTCT
ACCAATTGCGTGTGCTAGTTTGTTACCCTGCAATACGAAATGCAACGATT
ATCAACAACGAGATTATTATCACTGGATTACTTATATTTTCGTACACGAA
CGTTTCAAAGGCGAGGGGTTTGGGACACAGCTATTACGTCAtgttcaata
tgatgcttgGCAGAGTTCTAAACATCCCATAAGAGCTGATGTTGCGCATA
AAGCGGTACCGTTTTTTGAGAAGAATGGTTATTTTGTTTTTGGTGATGTA
TGGAGCCCTGCAGCTGGGAGTAGATATTTTCGTCGATTGCACCCGATGCA
GCTGGACTTTCGAATAGTTGAGAAGGAAGAATTATGGGATTCTTGA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.17754	MSTRG.17754	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.17754.1.p1	MSTRG.17754.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.17754.1.p1.exon1	MSTRG.17754.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.17754.1.p1.exon2	MSTRG.17754.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.17754.1.p1.exon3	MSTRG.17754.1.p1.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000182_pilon	genome	sc0000182_pilon:690930..699726 +

You are here

MSTRG.17754.1.p1 (mRNA) -