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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000182_pilon:342049..345926+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.17732.1.p1 ID=MSTRG.17732.1.p1|Name=MSTRG.17732.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3878bp|location=Sequence derived from alignment at sc0000182_pilon:342049..345926+ (Clytia hemisphaerica_ch_hm2_pilon)
gtacttggtaacgtgatcaaaaactgagcaaatcgatttttatcttttga
tattaacaaaggaaaaagataacaaaaagttaaaacaataagcttccaga
ccagggtttttatacggactatgatgTGATGCAGCTGCTGTCATGTGTGA
CATGTATTACTTGACGTTGAATAAGTTTCTAATAAGTCTTCATTCGAGAG
AAATATTCTTGAAAACAATCCATTACTGAAACCTTGTTGCTATTTGCTGT
GTTGTCAACATTCGAGACATGAGTTAtccagaaatttcaaaagattggTT
ACATCGACGTGGCTTTaccaccaaaattttttttctacaaaattttGTGT
TTGGGATGGAATATTCATTGACCTTTGTCACTTTGTACATTTATTTAAAA
GACGTCTTAAAATCACAACACGTCGATTTTTTCTATAGTCTCATATCCGG
CAGTTATTTGGGATTCATAGCGATAGCTGGGCTAATTATGAGTAAATTGT
TCGACAATACACGACGAACCCGTCTCTTGTTTAtcattggaaatattttg
acgTGTTTTGGAAACATCCTTTATACAATCCCTTATTCGCCTTGGTTGCT
GTTCGCTGGCCGCACCATATCAGGTAGAAATATttataatcaaaaaaatt
ataatttgggaccgccaaagacgggggtaaatcGTGTGGAATCAATAAAA
AATGTGATCTCAGGATCAAGGCCTCCTAAAACCACGGGATAAGTTCTAAA
AGTAATGTTATCATAAAATGAATGCCCAGTAAAGGTTTGGTGGCCATATA
ACttcaattttcatgaaattatgagcaattttctaaaattcaaaatgaca
GACGACCTAGCaacaaaaaatggcttttagcAAGGTGAGCGCTTCGTCCA
ACCCCTAtgttgttatacatttttgaaaccttttatCCAAAAGAAAAGTA
CGTTATTCAATTCTTTCTTGGAAAAAGTCCTTTTTAAGGATCTTAGGCTT
ACTCCCCGGCATTAAGACAAAGATATcatgaaatttcaacctttttttca
CAAGATatataagaaaaagaaatatgttaTATTCATTCGCGCTCTGTTGG
CTTTTTAAGCtcaaaagtttgaagatttttgagaaatcgcAAAGTTTGTC
TACAAAACATCCACGATGGTGtgtagaaatagaaagttctctCCATCCGT
GGTGCTCCATTTTACAATCTCaccattctggtctgtaaaatgcataattt
tgaaaaaaaaaaaaaaaaactttatctcAGGAACCTTCCTACCAAGTTTT
AATGCTGTAGCattaatagaaataaaaattattaataaaagcatttttaa
cataacccccggatttttcgttttaaccatgattttttcaaaaaccttcA
AGAATCGTCCgattttcgatgaaaatttgtttcggccgaaaatcgccttt
tttgcagattttcattgaattttttcgtttaatatttttgtttaagaATG
CCCACagttaagcatggttcaattttcaaggaAACTGACTTTGATAGCCG
GACCTTTCTAAATATCGTCAGAACAGCAGAgaatcgccggaaaaacggtt
ttccATTCCGGAAAAATTGGTTTATTAAGTGATTATAATTTGGATTTTGT
AGATTTCGAATATTTATCATTTGTTaccctcattttctttttccttaCAC
CTTATATATCCcccaatcaacaatcaatgttgaaatttaatgcgttatgc
tTTTTCGCTAacactatattttctgactgattgttgTCACATTTCTATac
agctttcatcatcaggtaggtccattcagcatacaTTCAACTTGTCAAAT
CAGGTTTTCACGCCGATTCCGAAtctgaattttattttgtcATAGCTATT
ACGCTTGACCTTATATAGAAGGCTTTATTTATTCagaaaatatcgcaaaa
atggtacgaaatcaatatttttgaaaggagATTCCGGATTTCAAATTCGG
AATTagcatgaaaaattaatttaaaaaagatagttaAACATAGATATTTC
CAAATAAAGTCAtttttggaccccccatgaatgaccaaaataaaaCAACT
TTCCGGACTGACCGATCCACCTCAAAAATCTAGGGTCGATTGACGGCAAA
CCAAGAATTATCTTTTTAAGTCCAGTcttattctcataaaaaaagtagTC
TGACGCCTTTTAATTATTATCTTTTACAGGTTTAAGTGGATACATATCCC
CTATCTTGACATCAGAGATTGCTCGTTCCTATCCACGAGATGAAGTTTTA
GGGAAACTATCAACATTATGCTTTTCCTTCTCGCTGGGTTTGATAGGCGG
TCCGTGTATCAATTTCGCCTTTATACGAGCTGATTTTCGGTTATTTGGTG
TTCATATTGGATATGCTAACGGTTCTGGTTTGGCTCTCACGATCATTTAC
TTTTCAATGATGATCTTATCGTTTTTTGTGAGTGATCTCTCAAGAGAGTT
TGATTTGAAAGAAGCAACAAGGAATTACCATCAACATAACAAATCTTTGG
AAATAGAGAAAGCAACAGAGGTAGATTCATTTGAGAAAACTGATGAAGCA
TTGAAAGAAAGTGATGTTCAGACATCAATACTGCCGACAAAGCTAGAGCC
AGACCAAGAAGAACCTTTACTAAACACTATTGAGACAATCAAACAACTGT
TAACTAATATAGATGCTATGATTTTATTGATGATTgcgtttttcttttct
tactCAATTGTTACATTTGAATCTTGGATCCCCATGACATGTGTTAATTT
CCTGCACTGGAATTTGGCTGAAATCAACGCAATTGTTTTGGCGACTGGTG
CTGTTTGCAGCATAAGTCTTTCAGGTTTCGCTGTTATTAACGTAAGTCAC
TTTGCTTTTCACCTATTGGCTGTCTGCAGTTGCATATCATTGGCGTTTGT
TTAcgtaatgtttttatatttccaTTGGTACGGTGGTTTGATTTTCGCCG
TCGATATAACGATTTGGATATGCTATACGTTCTGCTTTTCACTCCTCGCA
ATTGGCTTTGAAATGTTCACGTCGATAACATTAGCTTTGATGGTACCTTC
AAGAGTACAAACTTCCGCTGAAAGTATCCGACTAGCTTTTTCAAGTGGCG
GTGCTTCAATTGGTATGTTTACGGCTGCGTTCCTGTTTCACGTATTATCG
TATTTCAACCCTATATGCATTGTTCTGTGCTTTGTTCTGTCTTCTATGTT
AGTGTGGAGAcggaaatttttccaaaatccgAAAGAAATTTTACATTAGA
CGATTTTTGATTAGTAGTAGAATTCACTAATTTTgatctcattatttttt
ttattttttgaaattccactTTATAGGAATTTTGGGTTCTTAGTAGGGGT
TCTtatcacagatctgtaaagcccgaaaggctagatccGCGGCCTTTATT
TTGATAGGATTTcttaccaaagaaatcacgtgacaacaagcaatttcact
ggtttgagagtaAGGACCAACCTTAACCATAGTTTTTGTTTCGACGCTGC
GAAGACAGATTTTAGGGCGttgaaaaacattgttctaCCTTTAAATTTTC
TTCGTTTGTAATTATATTTGGAATTAGGTTTATTATCATACAACTGAGGA
CCATTTATTTCTCCCTTGCATagaattttaatatttaaaattaGTTATAA
CTCactacaatcagcgccgaaatatttggcacaaaaggggaattccgtCA
AAACTTTgtaaccacaagtgatttttaagtgctttgaagtacagttcgga
agtagagttttaactctgaatttaacattagacttaagacttaaggccgg
tttccacttgcgcgCGCTGTGATCGCAC Coding sequence (CDS) from alignment at sc0000182_pilon:342049..345926+ >MSTRG.17732.1.p1 ID=MSTRG.17732.1.p1|Name=MSTRG.17732.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2850bp|location=Sequence derived from alignment at sc0000182_pilon:342049..345926+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGTTAtccagaaatttcaaaagattggTTACATCGACGTGGCTTTac
caccaaaattttttttctacaaaattttGTGTTTGGGATGGAATATTCAT
TGACCTTTGTCACTTTGTACATTTATTTAAAAGACGTCTTAAAATCACAA
CACGTCGATTTTTTCTATAGTCTCATATCCGGCAGTTATTTGGGATTCAT
AGCGATAGCTGGGCTAATTATGAGTAAATTGTTCGACAATACACGACGAA
CCCGTCTCTTGTTTAtcattggaaatattttgacgTGTTTTGGAAACATC
CTTTATACAATCCCTTATTCGCCTTGGTTGCTGTTCGCTGGCCGCACCAT
ATCAGGTTTAAGTGGATACATATCCCCTATCTTGACATCAGAGATTGCTC
GTTCCTATCCACGAGATGAAGTTTTAGGGAAACTATCAACATTATGCTTT
TCCTTCTCGCTGGGTTTGATAGGCGGTCCGTGTATCAATTTCGCCTTTAT
ACGAGCTGATTTTCGGTTATTTGGTGTTCATATTGGATATGCTAACGGTT
CTGGTTTGGCTCTCACGATCATTTACTTTTCAATGATGATCTTATCGTTT
TTTGTGAGTGATCTCTCAAGAGAGTTTGATTTGAAAGAAGCAACAAGGAA
TTACCATCAACATAACAAATCTTTGGAAATAGAGAAAGCAACAGAGGTAG
ATTCATTTGAGAAAACTGATGAAGCATTGAAAGAAAGTGATGTTCAGACA
TCAATACTGCCGACAAAGCTAGAGCCAGACCAAGAAGAACCTTTACTAAA
CACTATTGAGACAATCAAACAACTGTTAACTAATATAGATGCTATGATTT
TATTGATGATTgcgtttttcttttcttactCAATTGTTACATTTGAATCT
TGGATCCCCATGACATGTGTTAATTTCCTGCACTGGAATTTGGCTGAAAT
CAACGCAATTGTTTTGGCGACTGGTGCTGTTTGCAGCATAAGTCTTTCAG
GTTTCGCTGTTATTAACGTAAGTCACTTTGCTTTTCACCTATTGGCTGTC
TGCAGTTGCATATCATTGGCGTTTGTTTAcgtaatgtttttatatttcca
TTGGTACGGTGGTTTGATTTTCGCCGTCGATATAACGATTTGGATATGCT
ATACGTTCTGCTTTTCACTCCTCGCAATTGGCTTTGAAATGTTCACGTCG
ATAACATTAGCTTTGATGGTACCTTCAAGAGTACAAACTTCCGCTGAAAG
TATCCGACTAGCTTTTTCAAGTGGCGGTGCTTCAATTGGTATGTTTACGG
CTGCGTTCCTGTTTCACGTATTATCGTATTTCAACCCTATATGCATTGTT
CTGTGCTTTGTTCTGTCTTCTATGTTAGTGTGGAGAcggaaatttttcca
aaatccgAAAGAAATTTTACATTAGATGAGTTAtccagaaatttcaaaag
attggTTACATCGACGTGGCTTTaccaccaaaattttttttctacaaaat
tttGTGTTTGGGATGGAATATTCATTGACCTTTGTCACTTTGTACATTTA
TTTAAAAGACGTCTTAAAATCACAACACGTCGATTTTTTCTATAGTCTCA
TATCCGGCAGTTATTTGGGATTCATAGCGATAGCTGGGCTAATTATGAGT
AAATTGTTCGACAATACACGACGAACCCGTCTCTTGTTTAtcattggaaa
tattttgacgTGTTTTGGAAACATCCTTTATACAATCCCTTATTCGCCTT
GGTTGCTGTTCGCTGGCCGCACCATATCAGGTTTAAGTGGATACATATCC
CCTATCTTGACATCAGAGATTGCTCGTTCCTATCCACGAGATGAAGTTTT
AGGGAAACTATCAACATTATGCTTTTCCTTCTCGCTGGGTTTGATAGGCG
GTCCGTGTATCAATTTCGCCTTTATACGAGCTGATTTTCGGTTATTTGGT
GTTCATATTGGATATGCTAACGGTTCTGGTTTGGCTCTCACGATCATTTA
CTTTTCAATGATGATCTTATCGTTTTTTGTGAGTGATCTCTCAAGAGAGT
TTGATTTGAAAGAAGCAACAAGGAATTACCATCAACATAACAAATCTTTG
GAAATAGAGAAAGCAACAGAGGTAGATTCATTTGAGAAAACTGATGAAGC
ATTGAAAGAAAGTGATGTTCAGACATCAATACTGCCGACAAAGCTAGAGC
CAGACCAAGAAGAACCTTTACTAAACACTATTGAGACAATCAAACAACTG
TTAACTAATATAGATGCTATGATTTTATTGATGATTgcgtttttcttttc
ttactCAATTGTTACATTTGAATCTTGGATCCCCATGACATGTGTTAATT
TCCTGCACTGGAATTTGGCTGAAATCAACGCAATTGTTTTGGCGACTGGT
GCTGTTTGCAGCATAAGTCTTTCAGGTTTCGCTGTTATTAACGTAAGTCA
CTTTGCTTTTCACCTATTGGCTGTCTGCAGTTGCATATCATTGGCGTTTG
TTTAcgtaatgtttttatatttccaTTGGTACGGTGGTTTGATTTTCGCC
GTCGATATAACGATTTGGATATGCTATACGTTCTGCTTTTCACTCCTCGC
AATTGGCTTTGAAATGTTCACGTCGATAACATTAGCTTTGATGGTACCTT
CAAGAGTACAAACTTCCGCTGAAAGTATCCGACTAGCTTTTTCAAGTGGC
GGTGCTTCAATTGGTATGTTTACGGCTGCGTTCCTGTTTCACGTATTATC
GTATTTCAACCCTATATGCATTGTTCTGTGCTTTGTTCTGTCTTCTATGT
TAGTGTGGAGAcggaaatttttccaaaatccgAAAGAAATTTTACATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000182_pilon | genome | sc0000182_pilon:342049..345926 + |
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