MSTRG.17426.1.p1 (mRNA) -

Overview
NameMSTRG.17426.1.p1
Unique NameMSTRG.17426.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000175_pilon:157074..164348+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17426.1.p1 ID=MSTRG.17426.1.p1|Name=MSTRG.17426.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7275bp|location=Sequence derived from alignment at sc0000175_pilon:157074..164348+ (Clytia hemisphaerica_ch_hm2_pilon)
TAAGGGGATTGAATCACTATAAAAGTTGGGAATTTCCAAAAGATGACATT
CATTTCTTTGGAAAGTTACAATAAGCTTGAAAAAGAATAAAACTAACAAT
GTGGACTTTTCACTTGACCCTATTATTTAGTGTAACGCAATTCATTTCTG
GAGGTTATGTGGACAAAGGTATATATAGATTTTTATCTACTTGAACATTT
GTTTGTGAAACTATTTCTATcagttttagatttttatgcACTCGGCAAAA
GAAGAAACTGCCCTATATGTTAGTGCCAAAACTATTAGTAGTGGTCTCTT
TAAGATCGCATTATCCATCAACATCCGTCACAGCCCGATATTTTACCCAG
TTTatatatgtgtgtttttctgtaacggagacggtaaggttctaatttga
ctagatcctgaacAGCTGAGGACGATGGTAactcagcacttttaccgtcc
ttaaTTTTACGGGTCAAAAGTGCGGGttgttccaaatcgcttcagtcact
ttaccgtcctcaaaagagcaaatacataaactcgctagtgaAACAGTGAA
TGCGATTCATGAATATCCTTTTTATACTCAACAGGTGTTCTGATCAGTCG
AAATTATTTAGTTGACCATCTCCCAACATGGAGCCCGACGTGGTACGTCT
CTTTCCAAGTCCAACCTATCCACAAAATCGCACACTGGACAAACGTGGTT
CGATTTACTGCCGGCACACAAGATTTCAAACGGGTTGGTGATCGTGTTCC
GGCTGTCTTCTTTGTACCACATACAACGAAGCTCCATATCTGCACCACTT
TGAATAACCATGTCAACTATTGTTTCAATAGCCACCCGTTGCCTCTTCAC
CAATGGGCTTCTGGTAAGTAACCAACGATACCTTTTGTCCCCGGAGAGGA
GACGCtctagaaaagaaaatctagccaAATTTGAATAAACTCAGGCGAAA
AATCGAaccggtgcattttcttgaaaagtttgaaccattttaaggcaaaa
acgTTCAGATTTTCCAATTGTACACCCTTAGTGTGACCTACGTATGGTAg
atcgtttaccttgagtgcccacCCCTGGACTCTTTTGTCATTACCTACAA
ATCTATCTTTATCTAAGACAATAGCTTAAGAGTCAAACGTGATAGACAAG
CGAAATAATTCGTGTTCTAGTTAACTTTAGATAGATATCAATGCACCATG
GCAACAATATACTAAATATATTTCATAATAAACGGTTGCTTTTCTTTGTT
TACAGTCGAAATTTCGCAAACTCAATCGGCCGCCAAATACCTCTACACCA
TTCGAATCAACGGTCGAACTGTTCATCAAGTTGAAAACAAAGGAGCTCGC
TATTACATGGGTGTCAATGTGTTCAGAGGAGACAACTTTTATGGACCAGC
ACCAGCAAGAATCAGACAATTGACTTACCATAATTTACCAAGTGGTAAAG
ATTATTTTCTTTAGCTTGTTAGTAAAGAAATGTTATCAAATAGTCTCCTt
tcccggggggagggggtactagggttggcagataaggggtatgtgcggat
gggacctccaaaaaccctTACAGaggctgatttttgctgaaaaggtgacc
cttagagagactttttttaaaaagtacttgatatatttgatttttgaaaa
aatccctACCcgtagagagactttgaaagatgaaaaaaccgacccttacc
gtctgcacatatccagcacccatttttgccaaAGTATCCTCTGGTCTTTT
TTACAATGAACAGAACAGAGCTCTATCTTTGAATTATATGATAAAGATTG
CGTGGTGAGAAATGTCCTGGTGGGAAAGTTTATATCTAGAGTTACCTGAA
GTGGTATGAAACTgtcagtagcagaataaaaaagtgtcttttctttctgA
CTGACTATCTAGAGTTAAATACTCTCGAGTTACTTCTAAGTTTTTCATAC
AGCTCTTAGAATTGTATTTTAAGATCAGCTCGAATTAGGGTCTTGAATCG
TTTTAACCCCAAACTCTTTTCAACTTTAGTTctcatttgaaaaatcttat
cacAAGTATTTTCTTGCCTAAATAGTGTATcataattaaaggttttattt
ttacataagtgttcccgtttcataccaTAGTATCTGCCTActgttatgtt
atgctgatataagcaaaaaatgtttttctttaccttattctgactaatct
tgctccacattcgtgtcaatccaatgtgaaaaagctttgcGAATTAAAAG
tcatgagtaagcaaacgatatcactcttatttaaaaacaaaacctttaat
tattATTTCTTTACATTCTAGTTTTCAAACTTGTCCGTAACACCATCATC
GTAGCGAACGTTAAATCAATGATTATCATGTTTTTCGTTTTAATCGTTCA
ATCAATGGTTTTAGTTGATTTAATGATCAAAACTACGGAACTATGATAAT
ACCGCTATACGGTTAAAAAGAAACCCGGGTATCTAACCCAAGGACACAAA
GGGAAAGCAAAAACTATACAGTAATTATTACACCGTCAGTCTGTCAGTAC
AACTTATAACTTATCTTATTTGCTGGATGAAATAAAATCAAGATAACAAA
GTTTTATTCATTGTTGCACAACTCGAAAAGCTTTGCTTTGTTGTCTTGAT
TTGaactttctataaaaaattaaaatggctaccttcaaattgaatttctt
ttaaaCATACAGGAACAGATAGTTAAATACAACATATTATTACTTATTTA
TGGCAGCAAATAATTGATGGTGAGCAGCAGTGTTCCTCACAGCCATCACC
GTCAAAGCAACCAAGAAAGACAAGTAAGTAGTTTCTTCTTTgtgttcaac
attttcatttgtcACATTTTGTGAAAATGAGGCGTCGAGTGGTggaaaaa
caagtttttgtgATTGTTTTTTAACGCCCAGTTTTAACGCCCAGTCACCT
TGAACTGactgccaagtgaaccgctgcgagtgggaatcaaaCCTCAGTCC
ACAGTCCACAGTGCCTAATTTTTATGCAtatccaggggatgtcaatcgaa
aatttcgattgtcgaaccaatcgaactcaACCAAACACCAAAACCAATCG
AACTGATTGGTCGAATCAATTGaactcaatcgaagtgattgatcggacaa
tcgaacccaatcgaatattgacatttttttctcgGTTGATTGGTTTCGAT
TCACTTCGATCGAGCTCGATTGATTCGATCGATCAATTCAATTgagttcg
attggtttcgattgagttcgattggtTTTGATTGAATCGGATTGCCTTCG
ATTAAGTTTCCTTTTTGTGCTTGAGGATTAAAGTCTGAGCAATAACGCTG
TGATCGTCTCCTTTCTACCCTTATTGGCTCCCTTTACGTCAgctcttatt
ggcgttattttttcgTTGCTGCCGTAATAAATAAGGGCCAGCAATaaagg
ggccggcgtaaaaagggccaacgAGGTAACTAGTCTAGATCTATTCCTTC
TACGCTACGACAATGAAAGCCTAGATTTAAGTCTAAGCCAATCAGAAACG
ATTGATCGAATCAACTGAACCCGATCAAACTCAATTGAAGTAATCGATCA
GACAATCGAGCCCAAtcgaaattttacattttttacgaCTTTGATTGATT
TCGATTGTCCGAACGATCACTTCGATTGGGTTCGATCAATTCAATCAATc
atttcgattgagttcgattgagttcgattgattcgattgacaatcaaatt
caattgtgttcgattgacatcccctgggcATAATGCATTTACAAGCATTC
GAGCATTTACCACTGAAAGGCATGATAGTAGATTGTGATCTGATATtacc
agacagtgtcaatcgaacaacttcgaacaaaaatcgcaatcgaaccaatc
gaacgtaatcgaacgcaatcgaataattgcgattcgattatcgttgacta
tgttccattggttcgaATACGATTATGTTCGCTgagtaatcgaagcaatc
gaacggcaaatcctgggtaatattcgattgcgattgattgcgttcgacaa
tcgaattgcaattattcaattgtgttcaattgcattcaattgattcggtc
ttcgatttgttcgattgacaccgtctggatattATGAGATTAAAGTCAAT
ATATCAATCAagattaactcaaatcaaaacacaTACTGtaacaaaaattc
actttcgtttttaaaatatACAATATATTGCTATATTACAGCTATATTCC
TTAAAATACACAGTGCAAAGGTTTATGATGGCAGATAGTGCAATGTACtg
gagatcaggtaacttgcatcagtggaggctaatatgcatagcctttaaaa
tgaatgacctggctggtcattgaaatataaaattaaatcaaaacaaaaat
ggtagagtagtgctgcgagcagagctggttagttcatttgttttgaaatt
ttgctgctttgattgatcagtcatttgatggctatgcaagtttccctcca
ctgatgcaagttacccgacttcacgatATCACCTTTCCATGGTACTCTCT
TTTAAGGTACACATCAATATTTGAATTACGATTATTTGATTAATGTATGA
CCATTACTGCATATATATAAAACACCATACTGTGTCTTAAAGTTtgagaa
atgtttgtttgctAACTCAGCTTTTTTGAATTATATACAAGCTCTTTAGT
ACCGTCGAAGAGTGATACATTGTGCTTCTCTGCCATACTTTGCACGGTGT
ATTTTACCAAATCGCCAATATGTACATTTTAAAGACGAAGGCAAATTTTT
GTAAGGTTTAGATTGTAATTGATCACATGTTTAAATCTGTAAACAAGaga
tttaaaatttgatgactggaattttgagtaaaacaaaggaaataaaGTGA
GTAAAAAGTATGGCAGAAAAGTGCAATATATCACCCTTCGATGGTATTGA
ATAGATATGAACGTGGAGCAATCTTTGatcgaaaacaaaaagaaatccaa
aatatttgtttacctCAACCAAAAAGAGCAATAGACCGATATCtggtctg
atatgaaacatgaaaACCGATATCTCAATCTAAAAAATGAGAGTTTTATG
TAATTTAAATTTACACAAGAATGATTTAATAATTTATTATAATGTCCAAT
CTTAAATTTAaccacaaaaaatattttgtccaagAAACCTGAACTTTTCT
AAGACGATGTCATAGAATCCCGAAAGCTCTATTCAATCTTAAAGATTAAT
TAAAAATCTCTAAGATTAATATTAACCTCCTTtaaaaaacataacttttt
aatGGAACTAATCATATaccaattttttagaatttaaaaaatcaaacttt
gttggTCAATAAATTTCTGTTAAGTTTTTGTTGTCAAACTAATAGAAACT
aagaactgaagaaaaaaatgtgcatGATGTGCCTGTTAAACTGATGGCCA
CTACTCAAAGCTCTAAAGTCTCTGCACACTAATTTACTGGTCGTACTTTG
TGGAACTATAATATTTGTCAGGTTTGCTAAACTTTCTCTGTTGTCATACT
TTGCAGAAGTTCCTTGAATTTTAATCAAACACTCGGATTTTTTAAGACAG
TCTGGATTACATGATATGACATGAGATTGATAATTGATGATTAAATGATT
TGCattcagattttaaaaatcgGCAATGATAATCAAGGTTTGTCTAATTA
ATATTTATTAGTTAATTTTATTGGGTGATCAATAGTGCTAATCTATCATT
TATCAGTTATCTAGATCATGATTGCTGGTCAAGAATTtataaatttcaag
aattttttaagTTGTAAATGTAACGTCTGATGTTTCTGAAAAGCTATTAC
ATGTATAaacagtgctgcaaatagggaaatatatattatttaaaacaaat
ttcaatcaattagaattgattattgatatattattattgattagttatCA
ATTGCTAACAATAACACAAGGCTAAGGATAAGCAATCAATTATATACTGT
CAAAGGACAAGAAAAAACATATCATCCATGTAGCATTATGTCTGATGTTT
TAGATAAAAccaagaatgttttttttgccCTTGGGAATAggcttcttttg
aaaaacaaagTATTTTAGTTGCCttggaaatatataaaaagtattttgCA
AAGAAAGCATGTTTTCACCATTTCTTTTGCAACTAAACTTACTACTATTG
ACTTATCACCTTGGCTATACAAGATATGAAATTGTGAAGGTTTGATTTTG
TTTAATTACTTTAAAGCAGTGCTCAGACAAGACAAGTTAAACCCTCTTAA
TGGCAAGcagggggtagaatctaccaccctagataattttttatcaatat
gatCATATGTAGTTTATATCAAActtacaaaaagtaaaaaataattgaca
CAACATGCATTATCATAATTTGTTctctattttttctatttctccATTTT
CCTTAACACTGCAGATCACTGGATAGCATCATCTTAATCACTAAAACTat
tggatttgaaaaattattatttctttGTAAAGAGGATATATTCATCCcat
ggaaaattttgaaggttgctaaaaacctaaaaattacaaaaattcttTGT
CTACACATCACTTTGTTTAGGTCTTGGTTTGATGAAACAAATTGCGGCAG
TTAACAAATCATTTAAAGCTAAAGCAAAACCCAAGAAAAAATCAGAGATT
TGCTTTGTTGAATTCAAGAGATCTGCTGAAACTGGTTGGTATATTTTGTT
TGTGCGGGACAactgaaactctaaattttgtCATCAATACAGACCAAAGA
GATTTCTCCctgtttcaaacttttcaacctgaattttattacacaaaaac
ttttgaaaggtTTAATCTTTAGCTAAGCTTTGTTGTCTTGTTCAATTTTA
AATGCATGCattctttctccttttttttGGATAATCTAGGTCAAAGGATC
TACAAGCTGAAGAGACCAAAACATAACAATGGAATGAAAAGAAGAATATC
AAATACTGGTAAATGTGCAGTTACATTATTTTATGCACTGGGTAATATTG
AGGTACCTAAATCTAAATAGAGTTGTGTGTCTTGTATGTATTGAAATTTC
CACTctttcttgttattttcatcaGTAATCACTGCAGATGAGCAAGTTTT
GGATATTGATGCAGAAAATTCAAACTGGCAAATTGCAGAAAATGTGGACA
CCATCGATAATGAAGAATTAAATGACATAATCCACCAAAGTGATACAAAA
AGTAGATATCATATCATCATCCCTT

Coding sequence (CDS) from alignment at sc0000175_pilon:157074..164348+

>MSTRG.17426.1.p1 ID=MSTRG.17426.1.p1|Name=MSTRG.17426.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2652bp|location=Sequence derived from alignment at sc0000175_pilon:157074..164348+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTGGACTTTTCACTTGACCCTATTATTTAGTGTAACGCAATTCATTTC
TGGAGGTTATGTGGACAAAGGTGTTCTGATCAGTCGAAATTATTTAGTTG
ACCATCTCCCAACATGGAGCCCGACGTGGTACGTCTCTTTCCAAGTCCAA
CCTATCCACAAAATCGCACACTGGACAAACGTGGTTCGATTTACTGCCGG
CACACAAGATTTCAAACGGGTTGGTGATCGTGTTCCGGCTGTCTTCTTTG
TACCACATACAACGAAGCTCCATATCTGCACCACTTTGAATAACCATGTC
AACTATTGTTTCAATAGCCACCCGTTGCCTCTTCACCAATGGGCTTCTGT
CGAAATTTCGCAAACTCAATCGGCCGCCAAATACCTCTACACCATTCGAA
TCAACGGTCGAACTGTTCATCAAGTTGAAAACAAAGGAGCTCGCTATTAC
ATGGGTGTCAATGTGTTCAGAGGAGACAACTTTTATGGACCAGCACCAGC
AAGAATCAGACAATTGACTTACCATAATTTACCAAGTGTTTTCAAACTTG
TCCGTAACACCATCATCGTAGCGAACGTTAAATCAATGATTATCATGTTT
TTCGTTTTAATCGTTCAATCAATGGTTTTAGTTGATTTAATGATCAAAAC
TACGGAACTATGAATGTGGACTTTTCACTTGACCCTATTATTTAGTGTAA
CGCAATTCATTTCTGGAGGTTATGTGGACAAAGGTGTTCTGATCAGTCGA
AATTATTTAGTTGACCATCTCCCAACATGGAGCCCGACGTGGTACGTCTC
TTTCCAAGTCCAACCTATCCACAAAATCGCACACTGGACAAACGTGGTTC
GATTTACTGCCGGCACACAAGATTTCAAACGGGTTGGTGATCGTGTTCCG
GCTGTCTTCTTTGTACCACATACAACGAAGCTCCATATCTGCACCACTTT
GAATAACCATGTCAACTATTGTTTCAATAGCCACCCGTTGCCTCTTCACC
AATGGGCTTCTGTCGAAATTTCGCAAACTCAATCGGCCGCCAAATACCTC
TACACCATTCGAATCAACGGTCGAACTGTTCATCAAGTTGAAAACAAAGG
AGCTCGCTATTACATGGGTGTCAATGTGTTCAGAGGAGACAACTTTTATG
GACCAGCACCAGCAAGAATCAGACAATTGACTTACCATAATTTACCAAGT
GTTTTCAAACTTGTCCGTAACACCATCATCGTAGCGAACGTTAAATCAAT
GATTATCATGTTTTTCGTTTTAATCGTTCAATCAATGGTTTTAGTTGATT
TAATGATCAAAACTACGGAACTATGAATGTGGACTTTTCACTTGACCCTA
TTATTTAGTGTAACGCAATTCATTTCTGGAGGTTATGTGGACAAAGGTGT
TCTGATCAGTCGAAATTATTTAGTTGACCATCTCCCAACATGGAGCCCGA
CGTGGTACGTCTCTTTCCAAGTCCAACCTATCCACAAAATCGCACACTGG
ACAAACGTGGTTCGATTTACTGCCGGCACACAAGATTTCAAACGGGTTGG
TGATCGTGTTCCGGCTGTCTTCTTTGTACCACATACAACGAAGCTCCATA
TCTGCACCACTTTGAATAACCATGTCAACTATTGTTTCAATAGCCACCCG
TTGCCTCTTCACCAATGGGCTTCTGTCGAAATTTCGCAAACTCAATCGGC
CGCCAAATACCTCTACACCATTCGAATCAACGGTCGAACTGTTCATCAAG
TTGAAAACAAAGGAGCTCGCTATTACATGGGTGTCAATGTGTTCAGAGGA
GACAACTTTTATGGACCAGCACCAGCAAGAATCAGACAATTGACTTACCA
TAATTTACCAAGTGTTTTCAAACTTGTCCGTAACACCATCATCGTAGCGA
ACGTTAAATCAATGATTATCATGTTTTTCGTTTTAATCGTTCAATCAATG
GTTTTAGTTGATTTAATGATCAAAACTACGGAACTATGAATGTGGACTTT
TCACTTGACCCTATTATTTAGTGTAACGCAATTCATTTCTGGAGGTTATG
TGGACAAAGGTGTTCTGATCAGTCGAAATTATTTAGTTGACCATCTCCCA
ACATGGAGCCCGACGTGGTACGTCTCTTTCCAAGTCCAACCTATCCACAA
AATCGCACACTGGACAAACGTGGTTCGATTTACTGCCGGCACACAAGATT
TCAAACGGGTTGGTGATCGTGTTCCGGCTGTCTTCTTTGTACCACATACA
ACGAAGCTCCATATCTGCACCACTTTGAATAACCATGTCAACTATTGTTT
CAATAGCCACCCGTTGCCTCTTCACCAATGGGCTTCTGTCGAAATTTCGC
AAACTCAATCGGCCGCCAAATACCTCTACACCATTCGAATCAACGGTCGA
ACTGTTCATCAAGTTGAAAACAAAGGAGCTCGCTATTACATGGGTGTCAA
TGTGTTCAGAGGAGACAACTTTTATGGACCAGCACCAGCAAGAATCAGAC
AATTGACTTACCATAATTTACCAAGTGTTTTCAAACTTGTCCGTAACACC
ATCATCGTAGCGAACGTTAAATCAATGATTATCATGTTTTTCGTTTTAAT
CGTTCAATCAATGGTTTTAGTTGATTTAATGATCAAAACTACGGAACTAT
GA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17426MSTRG.17426Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17426.1.p1MSTRG.17426.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17426.1.p1.exon1MSTRG.17426.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17426.1.p1.exon2MSTRG.17426.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17426.1.p1.exon3MSTRG.17426.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17426.1.p1.exon4MSTRG.17426.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17426.1.p1.exon5MSTRG.17426.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17426.1.p1.exon6MSTRG.17426.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17426.1.p1.exon7MSTRG.17426.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175_pilongenomesc0000175_pilon:157074..164348 +