MSTRG.17087.1.p4 (mRNA) -

Overview


Name	MSTRG.17087.1.p4
Unique Name	MSTRG.17087.1.p4
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000168_pilon:265639..270633+
coding sequence from alignment at sc0000168_pilon:265639..270633+

mRNA from alignment at sc0000168_pilon:265639..270633+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.17087.1.p4 ID=MSTRG.17087.1.p4|Name=MSTRG.17087.1.p4|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4995bp|location=Sequence derived from alignment at sc0000168_pilon:265639..270633+ (Clytia hemisphaerica_ch_hm2_pilon)
CGAGTTTGTCATGTGTAGCGTGtgtaaataaaaatggtagcattTTTCAT
TATCGCCCTCGGCTCACTTGAACATCTGTGCAgttttcatcatcaaaaag
gCATCATCTATCACAacaaaatgtctattacagaaCAGATTAATACAGCG
ATCAAAGATGCATTGGCTCAATCTTTAGGGACGATCGTTGAAGAAACTAC
GAAAGAAGTCAAAAGATCCATGCAAGACGATGTAACAGATACAATCGTCA
AAAAAGTAAGACAAGAACAAGTGCcgactttcaagaaaaaatttaactcT
GATCAGTACAAGCATACTAAAGTCATGGAAAAGATCATGTCAAAAATCAA
CAGCAATTTAGAAGCAAACGACATTACAAAGGCCAAAGAGAGCACCTCAG
AAGGTatgaaagaaatttataaaagacAAAAGTTGATACAAATAGCAGAT
AGGGAAGAGGATGGCTGGGAGGTTATTAAATGCTATCAGTCAGATAATTT
AGCATCTGATTCTGAGGATGAAAAGAGACTAAATAAATCGAGAAGACAag
ccaaacaaaacaaaaaggaagCAAGAACTAGGAGGCTCAATTACAGAAAA
AAGTTTGATCAAAATGGCTCAAGAGATTACACGTCAAACTCATTTTATTC
TACTAGATACCCACCCAAAGACAGATCATGTTATTATTGTGGGAAGGAAG
GACACTTTCAGTACAACTGCCCAGTCAAAAGATCAGACCTCAATAAAGGA
CACTAGGGATTacgattttaaagaaaaatgtaacGAAATTTCAGTATTTG
GTCGTCTAAAGACatgttcaaatttttggaaaaataatttacacgtttca
aattttattcaaaagattATCGACGAAGGCTATTTGATTCCATTTAAGAG
TGTTCCACCtgcattttttgccaaaaataacaAGTCCAGTCTCGATAATT
CAAATTTCGTCCAAGACGCAATCAAATCGCTATTGTCAAAAGGATGTATA
TCTGAAGTTTCCGATATCCCCAAGTGTTGTAATCCATTAACAGTTGCAGA
AAGAAATTCCAAGTTACGTTTGGTACTCGACTTGCGTCACGTTAACCAAT
TTGTTGATAACCAAAAATTCAAATACGAAGATCTGAAAACTTTTGCAGAG
CTTTCGACCAAGACGATTTCTTTATCACTTTCGACTTAACCTCTGGATAC
CACCACGTTGATATTCATCCTGAACATAAAAAATATTTAGGTTTTCACTG
GCTCTTTCCTGACGGACAAACTAAGTATTTCATATTTAATGTTTTGCCAT
TCGGACTAAGCTCGGCATGctacatttttacaaaaatattgagACCGTTT
ATTAAAAAATGGAGATCAGAAGGGAttaaaagtataatttttatagaCGA
TGGTATTTGTGGGGGAAGAGGTTTGCAGTTCGTTGAATCCATAGCCTTTA
GAATTTTAGAAGACTTAAAGAACGGGGGATGGCTtgtcaacttcaaaaaa
aaagttcattgATTCCAACGCAAATAGGAAAGTGGCTAGGGACTATCATT
AATACAAGAACTATGACCTTTCACGTACCAAAAGAAAAAATCGATAAACT
TTTGAGAAGGATTAAACTAGTtctaaaacaaaccttttgctcAGCCAAGC
AACTTTCACGAATTGCAGGTCAACTAGCAGCGATGCATCTTGCTCTCGGT
CCAATCGTAAGGCTTTTTACTCGATACATTTATCAACTGATCGAATCACG
CGTATCATGGTATCATCCAATTTCACTGTCTCAAGGTGCCCTCAACGAAT
TaaaattttggctcaaaaacattGATTCCAAAAACGGTTTCTCTTTCAAG
CCACATCCAACCACATCAAAAATGGTCTTCACAGATGCAAGCAATTTCGG
CTATTGAGGTTTTATCGCTGAGCGTCTAAACAAAGTCATCTGTGTAGGAA
AGTTCAGCAAATTCGAAAAAGCAACCAGTTCCACAGCCAGAGAACTTTCA
GCGGTAGATTACGTCTTGAAAAGTTTCGGTCCAAAACTTGCAAACGAAAA
TATCCAAATTAACATTGATAATCAAAACGCGTGTCACATCCTTTCTGTTG
GAAGTACCAAACCACACTTACAATCTTTAGCTCTTGAAATCTTTTACCAC
TGTATGAAATTCAACATTTCTATGCAACCTACATGGGTCCCTAGAGAGGA
AAATCAAATTGCAGATCACTATAGTAAATACAATGATACAGACGATTGGT
CAATAGACAATAAGAGTTTTATTACCGTTTCAAAAAGATATGGACCTTTC
ACAGTTGATAGATTTGCTGACAATTGtaacagaaaaacaaagagatttaa
ttcaaaattctaTTGTCCTGAAACTGAATCAGTGAATTGTTTTACAAACG
AttgaaatggtgaaaataattaTCTTTGTCCACCAACCAACCTGATTGGC
TCAACGATCAGACATCTTAAAGTTTGTAATGCTTCTGGGACTCTTATCGT
ACCAGTTTGGCCATCAGCTTACTACTGGCCAATCATTTTTCCACGACAAA
TCATCGCAAGTTTCGtaaaagacatttttatttttgaacctTTTTATACT
TCAATCTGTAAGGACTCTGTATTTAATGgctatgcaaaatttaagacaAT
GGCTTTAAAGATCAAATTTTAAGAAGGAAAGAacgtcaaatttaatttct
attttATCTTCAAGTTTTTCAGTATGTTTAAACAGGTAAAAAGTAACTTA
ACATTTCATTTGAGATGCATACAGGCATTTTATTTATCCAATAAGTAGAC
ACCCCTGAACGGAGGGCTTTCTTAGCCGACAAAGTAGACACTCCAGGACG
GAGGGCTTTTTAAGCCAACAAAGTAGACACTCCTGTACGGAGGGCTTTTT
TAGCCAGTAAAGTAGATACTTCTGTGAAGGAAGGGCTTATCTAGCCGATA
AAGTGGATACTCCTAAAGGGAGGGCTTTCAGCcagaaaatcaTttttatt
tttcttcgattGAAATTCCTTTTCAGTAATTaaggaaaatcgaaaatttt
ttagaaCCAAAGTAACCAGTCTTCTGCGTTTGGTTTTCTCCAAATTAATA
TTTTAGGCTCAATATGGTCAACCGTTGCAAACGTGAAAGACGACAGTATT
AGAGAGCTCGCTGTATCTCTTCCCGACGTAGTTATTGCAGCAAGAGCAAA
GTCAACGACATCGAAATACCAACGAGCATGGTCAAACTGGTTGGATTGGT
GTAAAGATAAAGAAGAAATCATGCCATTTCCAGCAAACCCCTTTTACGTA
GCAATCTACCTGAACTTCGTATTGAAAACTTCGAAGAAGAGTGGTACATT
AACAACAGCCTTCTACGGCATCAGATGGGGTCATCACGTCAACGGACTAT
ACTCTCCTACCGACCACCCATTCGTGAGTATGACATACGAAGGTACGTTA
CGACTTTGTGAAAAGAAGCCGAAGAATCCTAAAGAACCTATAACGCCAGA
AATCCTCAAACACTTAATTAAGACTTTCGATTCAGAATCATTAATGAGCT
TacgttttcttttgatttgctCCTTGGGCTTTTTTGGCTTCTGCAGAATA
GATGAACTATTAACCGTACAGTTGAAGGACGTAACAATAAAATCAGCCCA
CCTCGaaatttttctagaaatctcCAAAAGTGATCAGCATCGTGATGGTA
ATACAATTTACGTTTCAAGAAATGAGAACACCAAATTTTGCCCCGTGAAC
TTAGCAGAAAGATTTTTATCGCTTTCAAACGTATCCTTAGCATCCAACCC
TGAATGTTTTTTAGTTCCAAGAttgattaaaatcaaaaaaggtcACAAGA
TCCATTTATCCGAAGGAATTTCTTACACGAGAGCaagggaaatatttaaa
gaGAAAATGGAGGAGGCTGAAattaaaggcaattttttggttTACATAGT
CTTAGATCAGGTGGTGCATCTGCTGCCGCTCAAAACAACGTCAACGAAAG
ACTGATTTCAAAACATGGTCGTTGGGCGTCCGACAGGGCTAGAAATTCAT
ACATAAAAGACTCTATCGAGTACAGGTTAACAATTAGTCGCCAATTGGGA
ATCTAATTAAATTTGAAGTATCTTTAAATTATCATCGCGTCGAtatgtga
ttaaaaaaaaaaaatttttttttttctatatctatttttcttcgacaatt
aactttctttttaaCCCTCGAGATACACTGTTCACGCCAGCCAAAGACCA
AATGCTCAGAGAAAACAAATATGTGTATTTCAATGTGTTTTGAACCCTTT
GAGTAAGATAAGTAGGAGTGGAAAATAGGAAGGAAATGAAGTTTCCGACG
GACGAAGGGAGTTGGAAACGGATTTCCTTACGGTTTGGGAACGAGTTTGT
CATGTGTAGCGTGtgtaaataaaaatggtagcattTTTCATTATCGCCCT
CGGCTCACTTGAACATCTGTGCAGttttcatcatcaaaaaaaaaaaaaaa
aaatttaatctaaTGCAAGctttaaacattatttttccGGTATCACTGGT
CAATCGAGActtcaaaagaagaaagaacgATGGTTAGAGCGTGTCAATCG
GGTCGAACGGAAAGTTCAGTGGCGCTAAGGAAAAGACAACAAACAAACGA
CAaagataaatgtttttgaattgtattaatatttttagtttattgctGGC
TTTCGGATAAACGGTAGCTCAAAGGTTCTCCCTGTCAAAATACTCATACT
TGGTATGTACTTCCGTAGTTCGGGAAGAGACTGAGGGTTTAGTCCATGAG
GAATTGGGGCCCATCTAGCCTTCGGGGCCCCTATTCAGCCCTATCCGAAA
GTTAGTCTGATTCGTCAACCTTGAGAACACGACAAAGAGAAGTACGTTTC
ACAATGTTGCAACCAGGCTAACACCTAGGTAGGAAGTAAGATATGTAATA
TACTGTACACTGTTCACGCCAGCCAAAGACCAAATGCTCAGAGAA

Coding sequence (CDS) from alignment at sc0000168_pilon:265639..270633+

>MSTRG.17087.1.p4 ID=MSTRG.17087.1.p4|Name=MSTRG.17087.1.p4|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=429bp|location=Sequence derived from alignment at sc0000168_pilon:265639..270633+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTtgtcaacttcaaaaaaaaagttcattgATTCCAACGCAAATAGG
AAAGTGGCTAGGGACTATCATTAATACAAGAACTATGACCTTTCACGTAC
CAAAAGAAAAAATCGATAAACTTTTGAGAAGGATTAAACTAGTtctaaaa
caaaccttttgctcAGCCAAGCAACTTTCACGAATTGCAGGTCAACTAGC
AGCGATGCATCTTGCTCTCGGTCCAATCGTAAGGCTTTTTACTCGATACA
TTTATCAACTGATCGAATCACGCGTATCATGGTATCATCCAATTTCACTG
TCTCAAGGTGCCCTCAACGAATTaaaattttggctcaaaaacattGATTC
CAAAAACGGTTTCTCTTTCAAGCCACATCCAACCACATCAAAAATGGTCT
TCACAGATGCAAGCAATTTCGGCTATTGA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.17087	MSTRG.17087	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.17087.1.p4.exon1	MSTRG.17087.1.p4.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.17087.1.p4	MSTRG.17087.1.p4-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000168_pilon	genome	sc0000168_pilon:265639..270633 +

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MSTRG.17087.1.p4 (mRNA) -