MSTRG.17072.1.p1 (mRNA) -

Overview
NameMSTRG.17072.1.p1
Unique NameMSTRG.17072.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000168_pilon:67878..73597-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17072.1.p1 ID=MSTRG.17072.1.p1|Name=MSTRG.17072.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5720bp|location=Sequence derived from alignment at sc0000168_pilon:67878..73597- (Clytia hemisphaerica_ch_hm2_pilon)
AAATACCTGAAAAAAAAACACGCGCATTTCAATGTAAAAATCGAAATGGT
GAAGAAACACAATATCAAACTAAAGATCACCAACGGTACAGGAAGCAGTT
TGAAATACCACGGCGAATGGTTTGATTCAGGACGCTTGGCTGATGGATTT
CGATGGCCTGAACTCATCCAAGATGGCGGAAAAGAAACCGTGCTCTGCTA
TGAAAGTACATGTTTTTTTTATAAGCATACAAAAATCCAAAAGCTGGTTC
GGAAATACTTAGATCGAGAGATTTATAAAGCTGAAAAATGCTTTGAGGGA
TGCTTAGATCCTAAACAAAATTTTAGAGAAATTTCGAAAATCCAGCCAAA
AACAAAGGAATTCTGAAAAGGAAGGCTGAAAGTAATGTTTAGCATATGCT
TAAATTTTTGCCATATATGAGCCTAGATATGCTTATAAGCGCAATGCTTA
TAAAAAAATCATTTATGTGTTGAATTCTCTTCCAGGGGAGGGCACTTAGT
CGAAACAGGTGACGGGTTATGTGCGAGCATGAACATGGTGTGAGCTAAAA
AGGCACCCTTTTTCATTAACTCAAAAGTCTATCAAAGGGGTGTAAATTCA
TATGTTAGTCAGAGGATCCCAAAATAATTACTTTCTCCTCTCAAGGATCA
CGATTTACAAAACTTACGACCTAAATTTGATGAAAGTCAATCAAAATTTG
CAACAAATCACCCAAAATATTGGTAAAAAGAGTCTCAAAATTGGGAAAAA
AAATTCTCACAAAGGTCGAATACCCATCACCTCGCAAACTTAGTATACCC
GCTAAGGAGGAATAATCATATATTGAATCAAGCTGATTAACTCTGCTAAA
TCTGTACTCGCATCGACACTAAGAGTTTATAGTGACGAATTTTAAAGTCA
AAACTCGGTCGATCTTACCAAGTATCGCTATCAGCCTTCTATACAGTCCA
GTGGCTAAAAGAAAAACTCTCAATCATAAATTTAAAACCCCCTAAGACAT
GCAATGAAGTCTCCTCGAAAAACTTTTAAAATAAAATTATGTATTTTAGG
GGATTGGGCAATGGCTGGATGTTCAGGGTACGTTCAATATCGAATCAACG
GTCAAGTTTTAACGATCGGCTTTTCAAATCCTTCTGCTGGAAAGAATAAA
GTTGGAGTCGGATTGACTGGTAAAAAGGTATGATTTCTAACACTTACCAA
AGTCAAACCCAGTCCCGTAAAAGAAATGCTGGAAGGGGCTCTGGGTACGA
GTTTTGGTAAGATTAACCGTGCAAAAAGAATGCACCAACTTATGGGGCGT
CGAAAGCTCCGTACGGATAGATCAATAATTTTCAGACACTCACCCTTGCT
ACCTTCATCCTGCCGAGTAAAAAAACAATAAATTTGGTTTAGTCTTTTCT
TAACCCTACCTGGATGTTTATGTGCTTATCTGATAAAGGAAATTCGATGT
TTGTTGTACTTAAAAAAATACTTTCCTAAAAGTTTAGAGCTTGGATATGC
AGGTTTCTATTAACAATGCGCATTCATAGAACTTTGGATAAACCCCTTTT
ACTCGAAATAATCACCATAAATGAATACCTTTTGCATAAAGATATGGGAT
GAGATGGGATGCAACGATTATTCACCACACGTCACGACTTTACAGATGGA
AACGTTCGTATTAAAATGCCATTATTCATGTACTGGAGGTGCTACCAACA
ACATTGACATTGTACTGGAAAATATAGAAAACAGGTTTGTGATGTATTAC
ACTATCATCGGTAAAAAAGATTCGATGAACGCCGAAACGAGTAATTCATT
ATATCCACATTTGCAATTTCCTTTAGTAATAACGTAGACCCAAGGTGGGG
GGATTGGGCAAAAAGGGGTACGGGGATGTACCGCTGGTCAATGTACCTTT
TTTCACCTCTATGAGTCCCAGGTAGGGTCGCAAAAACACCGAAATAGAAA
AACCAGTCCCTCGTAGATTACCTTTTGGGGAGAATTTGGAAAAATATGGA
AATTTTTGAGAAAATCTTGGAATTTCAGTCCTATTCAGGGTCACTTTAAA
AAAAAAAAGAGTCACCGTAGGGTCCATTTTTCGAACTTCAGCGGCACACC
CCTGTCGGTCAGCAAGGGTAGTTTCCCCTCAAGATGTAGACCTTACAGCT
GATTGGTTGTAAGTAATTTAAAATCAGTCAGTAGTTCACTAGCAACCAAT
CAGCTGGTTTTTTCCGTAATGTAATGTTAGAGGACATAGCAATGGTGCAT
ATCTTGAATAAACGTTACAGCGTAGAAATAAAGTCGTCTAGTAGAGGCTA
GGTTTAACAGGGATTTGACACGTTGAAATTATTTTTGTTAATTTCTTTTT
ATTATCAAAGACTCAACTTTAAAAGTCGTCTTATTACAGTGTGAACCACT
ACATAGAAATGGCAACTATTACCTTAACGTGAAATATTTCCCGAACGGGA
AGGTGAAAATAACCCAAAAAGGAAACTGTTTCCAGATTGAAAATTTCATC
ACTTTTCTGTTTCCCGTCTTGGTCAATAACTGTTCATTGTTCCCGATCGG
GAAGTTGAATTTTTGTAAAGAAAGCAGATTTTTGTTTCCCGATCGAGAAG
AAGTTTCCAAATAGGGAAGTTTTTAATTGGGAATGGGGAAAGTAGAATTA
AGAAGCGATTACCCGGTGGATTTCTTAAGTACCCGGTGAAGGGTATTTAT
TTACCTTCTTTTACAATAGGCATCAGTTATTTACCTTCCACGACCATTTC
CGGAGTGCGCAGAGGTCACATTCCCGATCGGGAAACTGGTTAACTTCCTG
ATTCGGAAACTCTATCCATTTCTAGAAGAATGACATTCTTCTATGGAATT
ATTAACAATTTAGCCCCTTCGTATTTACGTAACTACCTGCCAGTAAGACT
TACAGCACCAGGTGGCCTTAGAACAAGAAATCCTATTTATCCTCCTAATA
TACGAACTGAACGTTTCCGTAACACTTTTTTTCCGTACTGCATATCTCAG
TGGAATGTTCTAAGAGGTAATATACGAGATCTACCTTCAATTAAAACTTT
CAAAAAAGCAATCTATGAATTTTTGAGACCCAAGCAATCCCATGTTTTTG
ATGTTCCTGACATTCAAGGAGTGATCTTTCTTAATCGACTTCGGGTCGGT
TTCAGCCATCTCAACGAGCATAAATTTAGACATGGCTTCCGCGACACTTT
AGACCCTTTCTGTGGTTGCCGAACTAACTCTGTTGAAAACACTCAACACT
TTCTTCTGCACTGCTCTATATATTCCCATGCAAGACAATCTTTGTTCGAC
AAACTTCAGACCCTAGGCATTATTTTTCATCCGCCACTTAACCCTCCTTT
TTTCTGTCGGCTTTTATTATATGGGGATGAAAGTTTGACTTCAAATCTAA
ATAAATCTATTCTTTGTTCTGTTGTTGAATTTCTTAACGAAACTGGAAGG
TTTAGCGGTGCTTTATTTTAGGCTTTTACCTAACAACTGTAGCTTCCTTC
TCCAAGATTTTTTCTTTTTATTTTCTTTATTTACTTATTTATTTATTTTT
TACATAGTCTAAAGTCTGTTCACGATAAGTGTGCACTCTTTTTTCTTTTA
CCTATAACTTTGGAAGGAATTCTTTGTTCTTTATAAATTTGGTATCGTTG
GGAGAGATATTTGTAAGTGGAACAATTTGAAGTAAAAAAGTCTTTAAAAA
AATTCTAAAGACGAAGATGAAAATGAAGAAGAAAAAAATGAAGATCTTGT
AGAGAAGTGCTATAACTTTCATTTTCACTGGAGAGATTTTTTGATCTTAG
GAGGTATCACCACTGTGAAGAAATGTCACTAAAATATTTATTCAATATAA
AGTTATGATACAAAGTTAATAAGTGATTGACCCCAAAAAACAGCAGAAAA
CAGCAGAAAACAGCGTTTTTAGACGTCAATTAGCTTATAACTTTGTTTGA
TATCTTTTGACTGAATGATTAGTTTTGAGAAATTTTTTCACAGTGATAAC
GTTCGATAATTAAGGAGTCACTTCAGTGAAAATGATAGTTATAGCACCTT
TCTACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTCATTTTTAGA
ATTTTTTTATAGATTTTTTTACTTCAAATTGTTCCACTCACAAATATCTC
TCCAACGATACCAAATTTGTAAAGATTGAAGAATTCCTTCAAAAGTTATA
GGTAAATGAAAAAAGAGTGCACACTTATCGTGAATAGACTTTAGTACCTC
TGGCGATATAACGTTAGTTCCTAGCGGGGGGAGGGACTATATTTTATGTT
TAAGTAATGTTTTGTAATATATGTTCGTAGTGTACACGTGTCTTTGTTTC
AATAAGAAAAAAAAAAAAAAAAAATTTCGGGAAGTTTTTCACCTTCCCGT
TCGGGAAATATTTCCCGTTAAGGCAATAGTTGCCATTTCTATGTAGTGGT
TCCGACTGTATTAGGAGTTGAAATTTGCAATTTTCTTTAAAAAAACTTAG
CAAAAAATGACCGAGGCACTTAAAGGGTTTACCCCAATTTATTGAATATT
TAGGATAAGATAAGCATTTAGACTTGAGGAACTTTTTTCTAAAGCCTTTG
TTAGAATAGAATAGCTATTTATAAGAACAAATGAAATTTTCGGTTTTTGC
TCACTTTGGGCATGATGAGTGATGTCATCAAAAACAATTTTTGACAAAAA
GTTACCTTGTATGACAAAGGATCATGTGTGCCAAATTCCATTCAAAAAGA
CCCCCCAGATCAAAAGTTAAGGGGTAGTACAGGAACATCCTTCCCCCTAG
TTTGAGCCACCCCTATGAATAGAGTTAAAGAGATCTCGAGAAATCGCTAA
AATTGAAAACCTACGTTTCGACCATTAGAAAAAAGCTACTTTAAGCGATC
GAAAAATTGTTGAAATTGAAAATTTTAGTAAAGTACTTTCGGGAAATAAA
GTAGAGATGTTAAAGTTTTTCATGCAGCAAAACTTTTTATTTTTAAAACT
TTTTTTTCCCCTGGATTTGAGAGAAATTTTTGATTTAATTGACGTTTTGG
GGGCCACAGAATATACTGTACTTAATGACTCGACTTTAAAAGTCGTCTTT
TTAGGGGTTGAAATTTGTACACAAAAATACAATTTCTTTTAGAGTCAGAG
ACGTTCATCCACTGAAAGTTGAAGAAGAAAGATGGGGAAGCAGTGGCGTT
CCAATACAACAAGAAAGTTATAGTGAATGTACGGAAAGTACGATCTATGA
AAGAAAGTTTATGAATGGTTATTGATATTGAAAGTTGTGTGGAAATTTCA
TGATATTCATTACGTAATGTTTTCAAATCGTACTGAAAAACGTATGGCAA
TATTTTAAACAATTTTTTATAACTCAACTTTTCCGAGCTACCTAAAGCTG
ATAACTTGATTCTTTGAAACGTGAAAAAGTATAAATTCTGTAGTTGAAAT
CAGGAGGCATCACGATACTCCTGTATACTGTATGTAATATATTAACTTAA
CAGATCGTACAATTTATCTACCACTCTTAAACCTTTTTTTATCATTTTTC
ATAGAAAAATACTATTTCAATTGGCAATATTATTATCTCTTTATCGGATT
AGCTAGTGGCTAAATTTGAGGGGATATATCAGTGATACCCCATTTTTATT
GCCTTGGGAATAGAAAAAGTTTTCAGAAAAGACGAGCATCTTTTTACTTT
GTTTGTAAAGCTCTCAGTAT

Coding sequence (CDS) from alignment at sc0000168_pilon:67878..73597-

>MSTRG.17072.1.p1 ID=MSTRG.17072.1.p1|Name=MSTRG.17072.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2256bp|location=Sequence derived from alignment at sc0000168_pilon:67878..73597- (Clytia hemisphaerica_ch_hm2_pilon)
AGTCAGAGACGTTCATCCACTGAAAGTTGAAGAAGAAAGATGGGGAAGCA
GTGGCGTTCCAATACAACAAGAAAGTTATAGTGAATGTACGGAAAGTACG
ATCTATGAAAGAAAGTTTATGAATGGTTATTGAATATGGGATGAGATGGG
ATGCAACGATTATTCACCACACGTCACGACTTTACAGATGGAAACGTTCG
TATTAAAATGCCATTATTCATGTACTGGAGGTGCTACCAACAACATTGAC
ATTGTACTGGAAAATATAGAAAACAGGGGATTGGGCAATGGCTGGATGTT
CAGGGTACGTTCAATATCGAATCAACGGTCAAGTTTTAACGATCGGCTTT
TCAAATCCTTCTGCTGGAAAGAATAAAGTTGGAGTCGGATTGACTGGTAA
AAAGATGGTGAAGAAACACAATATCAAACTAAAGATCACCAACGGTACAG
GAAGCAGTTTGAAATACCACGGCGAATGGTTTGATTCAGGACGCTTGGCT
GATGGATTTCGATGGCCTGAACTCATCCAAGATGGCGGAAAAGAAACCGT
GCTCTGCTATGAAAAGTCAGAGACGTTCATCCACTGAAAGTTGAAGAAGA
AAGATGGGGAAGCAGTGGCGTTCCAATACAACAAGAAAGTTATAGTGAAT
GTACGGAAAGTACGATCTATGAAAGAAAGTTTATGAATGGTTATTGAATA
TGGGATGAGATGGGATGCAACGATTATTCACCACACGTCACGACTTTACA
GATGGAAACGTTCGTATTAAAATGCCATTATTCATGTACTGGAGGTGCTA
CCAACAACATTGACATTGTACTGGAAAATATAGAAAACAGGGGATTGGGC
AATGGCTGGATGTTCAGGGTACGTTCAATATCGAATCAACGGTCAAGTTT
TAACGATCGGCTTTTCAAATCCTTCTGCTGGAAAGAATAAAGTTGGAGTC
GGATTGACTGGTAAAAAGATGGTGAAGAAACACAATATCAAACTAAAGAT
CACCAACGGTACAGGAAGCAGTTTGAAATACCACGGCGAATGGTTTGATT
CAGGACGCTTGGCTGATGGATTTCGATGGCCTGAACTCATCCAAGATGGC
GGAAAAGAAACCGTGCTCTGCTATGAAAAGTCAGAGACGTTCATCCACTG
AAAGTTGAAGAAGAAAGATGGGGAAGCAGTGGCGTTCCAATACAACAAGA
AAGTTATAGTGAATGTACGGAAAGTACGATCTATGAAAGAAAGTTTATGA
ATGGTTATTGAATATGGGATGAGATGGGATGCAACGATTATTCACCACAC
GTCACGACTTTACAGATGGAAACGTTCGTATTAAAATGCCATTATTCATG
TACTGGAGGTGCTACCAACAACATTGACATTGTACTGGAAAATATAGAAA
ACAGGGGATTGGGCAATGGCTGGATGTTCAGGGTACGTTCAATATCGAAT
CAACGGTCAAGTTTTAACGATCGGCTTTTCAAATCCTTCTGCTGGAAAGA
ATAAAGTTGGAGTCGGATTGACTGGTAAAAAGATGGTGAAGAAACACAAT
ATCAAACTAAAGATCACCAACGGTACAGGAAGCAGTTTGAAATACCACGG
CGAATGGTTTGATTCAGGACGCTTGGCTGATGGATTTCGATGGCCTGAAC
TCATCCAAGATGGCGGAAAAGAAACCGTGCTCTGCTATGAAAAGTCAGAG
ACGTTCATCCACTGAAAGTTGAAGAAGAAAGATGGGGAAGCAGTGGCGTT
CCAATACAACAAGAAAGTTATAGTGAATGTACGGAAAGTACGATCTATGA
AAGAAAGTTTATGAATGGTTATTGAATATGGGATGAGATGGGATGCAACG
ATTATTCACCACACGTCACGACTTTACAGATGGAAACGTTCGTATTAAAA
TGCCATTATTCATGTACTGGAGGTGCTACCAACAACATTGACATTGTACT
GGAAAATATAGAAAACAGGGGATTGGGCAATGGCTGGATGTTCAGGGTAC
GTTCAATATCGAATCAACGGTCAAGTTTTAACGATCGGCTTTTCAAATCC
TTCTGCTGGAAAGAATAAAGTTGGAGTCGGATTGACTGGTAAAAAGATGG
TGAAGAAACACAATATCAAACTAAAGATCACCAACGGTACAGGAAGCAGT
TTGAAATACCACGGCGAATGGTTTGATTCAGGACGCTTGGCTGATGGATT
TCGATGGCCTGAACTCATCCAAGATGGCGGAAAAGAAACCGTGCTCTGCT
ATGAAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17072MSTRG.17072Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17072.1.p1MSTRG.17072.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17072.1.p1.exon4MSTRG.17072.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17072.1.p1.exon3MSTRG.17072.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17072.1.p1.exon2MSTRG.17072.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17072.1.p1.exon1MSTRG.17072.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168_pilongenomesc0000168_pilon:67878..73597 -