MSTRG.15504.1.p1 (mRNA) -

Overview
NameMSTRG.15504.1.p1
Unique NameMSTRG.15504.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000137_pilon:533363..536650+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15504.1.p1 ID=MSTRG.15504.1.p1|Name=MSTRG.15504.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3288bp|location=Sequence derived from alignment at sc0000137_pilon:533363..536650+ (Clytia hemisphaerica_ch_hm2_pilon)
ctaacgttctccttttttgtttttagtttcgtttcgttttGCGACTGTTG
GTCGTCGCTGgtcaaaaatgaccaaaaagaaaatgttttcgtgtttttgt
ttaCATGTGTTTTCATTTCACACTTGATACATAGTTTAGCAGCTTCAGCC
ACCATGGTTCTTGATATATTGAGCTCACCAGAACATTTGCAAATGTTACA
ATGCTACGGAGATGAGGAAACACAGGAGGAAAATCTCGTTGGAAGGGATT
AtgatattgagatttttcacGAGCCAGCGAATTTTAAACCAAGATCGGGG
AACGATCATGAGGCTCCGAAGCAGCGACGTGTGACGATTGCTGATATGCC
TGTCAATCATCCCCAATATCCTCCTGGGTATTCCGGCGAAGGTTTGTAAT
CCGATCTTAAGTATCTAAgtttatgtatattttttgctttattttcttCT
CAGCATATCGAAGATTCTATTCAAAATGGGCTTTTCTCGTCACTTGAAAG
GTTTGAGATTTTCAAAACATGCAGatcttttctaaaattttagtttgAGA
TATATGACTTCCAGAAAgtaaacaatttaattttctgagaTTTCAATCAT
CGTGTAGATAATATGATTAAAACTTTCGGCAAAAAGTGTTACAGATTTTC
TTCGTTGATGCAGCATGGGCCGGGAGAGgaataaaaaaacacatttaTTC
TCGCCAACGATatcttttattcttattttcaaaattcagggAGACAAAGA
TGCCGAAGCCGTTATTCAACCTTCATTGCGGGTATCAATCAATTCGATCC
ATACCAAGAGTTGACGGCCACGCAAATTGCTGCTTTTCGTCAAGTCTTTG
ACATGGTTGACAGAGATGGTGGTGGAAGTATAGATGCCAACGAACTGTAT
TACAGCATGAGAGATTTAGAATCTGGATTAATATTGGATGAGATCAAAGA
GATTTTGGAAGAGCTTGATCGTGATGGGAACGGTGAAATTGATTTCGAAG
AATTTCTTTACATGATGACCAGCATGAGCCTACAAATCAAAGGTGAGTTG
TAATAAATAGTCTTGCCTCTAGTATTCTTCAAATGACATCCTTTATACCT
AAATCTCATTTTAACATAGTATGGAGGCAATATTTACCAAATCCATGATA
TCCCTTCAAACAAGCATTTGAATCTTTAAGACGTTGATTGCATTATCGAT
GGGTATTTAGCATTACTTTTAGACCCTTGGTTTATCATCACTTCTAGACC
TTTGGCTTGTTATTTGGACTACTCAGTACAAACTTTTCATTCATATCAAC
TTCAATCGATatcctttttattttcagagGCTCAAGAAGATAACGTATTG
GTTAAACAAGGCAAACGTCGTCAAAGCATCTTCTTTTCTGTCATTACAAA
ATTTGCTATGAAACATTCCTTGAAAGAAATCGAGCATTACTACGCGAGCA
AAGCTAAACGTTCTCCACACGTTGTCGGACATTACATAGCTGGTGCTCGT
GTCTTTGGCCTTACTGATAAAGAATTACGTAAAACATGGAAAGAATTCTC
ACACGCCAGTAAAGGGAAAGACTCCCCTTACGCTCAGCCTTTGAACTTTA
TAGTCGATGATAACAATAACGgaaaaaagaagatgaagaaaacaGTCGTT
CGTGCCATGCCGCGTGATaaaaaaaCAGAGTTGAAAACTTCTGTGGCGAA
TGATGATTCTCATAAGAAGTTCGTCTTCAAATTGAAGAAAACTTCTAAAC
CCACCTCACCACAGCCTGTACATTGCACAAATACTGCCATAGATGCTGCT
GCAAGTGAAAAGTCAGAACTCAATATAGAATGTTCTCCTCGCTCTGTATC
TCCGTGTCCTGGGAGTCCATCTAAATCGCCTAGTCCGTGCTCTGTGCGAT
CGACAAGCTCCACCCGAAGTGGTGGCACCCTATCACCGACATTAGAAAAA
CGCGACGGTTGGACACCACGACATCGACTTCCAATGACTAAAGTGAAGCT
TCCAAAATTTACGTATtctaaaaaggaaaagaaactgGTCGTCAAAGATT
TGGATAAGATTCGACAACGCGTCAAAAAGACACGTGAAGCTTATCACGAT
GACCTcattaaagaaaaagaagacactgCAAAAGAATAttggaaaagttt
aaaaacgGGACAGATTTCTTCGGAACGTTTACACACGAATTTCAAACGCG
TTTTTCGTTGTTATTCGCCTTCAAATGATGGCGAATTCGGTAATTTTGCA
TCGAAACATCAACGAAGTCCCGAACGTGCTTTGGATCTGCACCGTAGTAA
CGGAGGATTTGTACATTGAAAACAACAGTAACCAACATTttagtaaaata
tctttcaGCAAAATGACTCAAAAGATTACCTAAATTCTAACTATTTTCCT
TGTAACAAATCAACTTCCAATCTACATCGATCGCTATGCTTTTTTCAGGG
TCTGCAGACATACAAATTGAATAATTCGGGGATCATTGGGCTATTTCCAG
AAAATAGTTCGTTCATTGAGAGTGGAAGTtatgttatttttcaaatatct
aCCCCTGGAAGTTTCGACACGTGTTTTTCCCTGTTAGCCCTAATTGAGTC
GTCAACTTTAAAAGGTTGTTGAGCCAAAATTGACCATCAGTTTACggact
accttattacacaaatattactaggcaagtgttcaacggccttgaaatta
acacgcacaaaattaacacgaattttatttgctttttcaaggacaccatg
gctggttttaattaagggggttttcattaaaacgaaatttttcaattcgt
gagaataaaatgactagtaatattcgtgtaataaggtagattCTAAAGtt
atctttttaaaatactGTTTAGTTTGCGAGCGTGTTCAATAAACGTCACT
CAGTCTAACAGCATAGTTCGTGCTCGTTCCCTTTCATTTTGACCACCCAA
CAATGATCATTGATAATCATGCAATATATATAACAAAAGTTTTGTTGTTT
TAGCGGAAAAAACATCTCCTTAATTACCATGACACCGTGACCCTAACGTT
GGCAGACTTTTTTCCTGTtcataaaatacatttttcctTTTTGGCAAGGT
AAAGAAAATTATATGACTATTTAAATTATTGACCATACTATTTGGAACAA
CCTAActggtgcatgtcactagtccaaCATTTTTCTAGTCccacagtaaa
atagtccgaatctataaaataaattcacaatttagaagtctttttttccg
acatcacttttgtccgaaaacgaaagattttcactgag

Coding sequence (CDS) from alignment at sc0000137_pilon:533363..536650+

>MSTRG.15504.1.p1 ID=MSTRG.15504.1.p1|Name=MSTRG.15504.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5058bp|location=Sequence derived from alignment at sc0000137_pilon:533363..536650+ (Clytia hemisphaerica_ch_hm2_pilon)
ctaacgttctccttttttgtttttagtttcgtttcgttttGCGACTGTTG
GTCGTCGCTGgtcaaaaatgaccaaaaagaaaatgttttcgtgtttttgt
ttaCATGTGTTTTCATTTCACACTTGATACATAGTTTAGCAGCTTCAGCC
ACCATGGTTCTTGATATATTGAGCTCACCAGAACATTTGCAAATGTTACA
ATGCTACGGAGATGAGGAAACACAGGAGGAAAATCTCGTTGGAAGGGATT
AtgatattgagatttttcacGAGCCAGCGAATTTTAAACCAAGATCGGGG
AACGATCATGAGGCTCCGAAGCAGCGACGTGTGACGATTGCTGATATGCC
TGTCAATCATCCCCAATATCCTCCTGGGTATTCCGGCGAAGggAGACAAA
GATGCCGAAGCCGTTATTCAACCTTCATTGCGGGTATCAATCAATTCGAT
CCATACCAAGAGTTGACGGCCACGCAAATTGCTGCTTTTCGTCAAGTCTT
TGACATGGTTGACAGAGATGGTGGTGGAAGTATAGATGCCAACGAACTGT
ATTACAGCATGAGAGATTTAGAATCTGGATTAATATTGGATGAGATCAAA
GAGATTTTGGAAGAGCTTGATCGTGATGGGAACGGTGAAATTGATTTCGA
AGAATTTCTTTACATGATGACCAGCATGAGCCTACAAATCAAAGagGCTC
AAGAAGATAACGTATTGGTTAAACAAGGCAAACGTCGTCAAAGCATCTTC
TTTTCTGTCATTACAAAATTTGCTATGAAACATTCCTTGAAAGAAATCGA
GCATTACTACGCGAGCAAAGCTAAACGTTCTCCACACGTTGTCGGACATT
ACATAGCTGGTGCTCGTGTCTTTGGCCTTACTGATAAAGAATTACGTAAA
ACATGGAAAGAATTCTCACACGCCAGTAAAGGGAAAGACTCCCCTTACGC
TCAGCCTTTGAACTTTATAGTCGATGATAACAATAACGgaaaaaagaaga
tgaagaaaacaGTCGTTCGTGCCATGCCGCGTGATaaaaaaaCAGAGTTG
AAAACTTCTGTGGCGAATGATGATTCTCATAAGAAGTTCGTCTTCAAATT
GAAGAAAACTTCTAAACCCACCTCACCACAGCCTGTACATTGCACAAATA
CTGCCATAGATGCTGCTGCAAGTGAAAAGTCAGAACTCAATATAGAATGT
TCTCCTCGCTCTGTATCTCCGTGTCCTGGGAGTCCATCTAAATCGCCTAG
TCCGTGCTCTGTGCGATCGACAAGCTCCACCCGAAGTGGTGGCACCCTAT
CACCGACATTAGAAAAACGCGACGGTTGGACACCACGACATCGACTTCCA
ATGACTAAAGTGAAGCTTCCAAAATTTACGTATtctaaaaaggaaaagaa
actgGTCGTCAAAGATTTGGATAAGATTCGACAACGCGTCAAAAAGACAC
GTGAAGCTTATCACGATGACCTcattaaagaaaaagaagacactgCAAAA
GAATAttggaaaagtttaaaaacgGGACAGATTTCTTCGGAACGTTTACA
CACGAATTTCAAACGCGTTTTTCGTTGTTATTCGCCTTCAAATGATGGCG
AATTCGGTAATTTTGCATCGAAACATCAACGAAGTCCCGAACGTGCTTTG
GATCTGCACCGTAGTAACGGAGGATTTGTACATTGActaacgttctcctt
ttttgtttttagtttcgtttcgttttGCGACTGTTGGTCGTCGCTGgtca
aaaatgaccaaaaagaaaatgttttcgtgtttttgtttaCATGTGTTTTC
ATTTCACACTTGATACATAGTTTAGCAGCTTCAGCCACCATGGTTCTTGA
TATATTGAGCTCACCAGAACATTTGCAAATGTTACAATGCTACGGAGATG
AGGAAACACAGGAGGAAAATCTCGTTGGAAGGGATTAtgatattgagatt
tttcacGAGCCAGCGAATTTTAAACCAAGATCGGGGAACGATCATGAGGC
TCCGAAGCAGCGACGTGTGACGATTGCTGATATGCCTGTCAATCATCCCC
AATATCCTCCTGGGTATTCCGGCGAAGggAGACAAAGATGCCGAAGCCGT
TATTCAACCTTCATTGCGGGTATCAATCAATTCGATCCATACCAAGAGTT
GACGGCCACGCAAATTGCTGCTTTTCGTCAAGTCTTTGACATGGTTGACA
GAGATGGTGGTGGAAGTATAGATGCCAACGAACTGTATTACAGCATGAGA
GATTTAGAATCTGGATTAATATTGGATGAGATCAAAGAGATTTTGGAAGA
GCTTGATCGTGATGGGAACGGTGAAATTGATTTCGAAGAATTTCTTTACA
TGATGACCAGCATGAGCCTACAAATCAAAGagGCTCAAGAAGATAACGTA
TTGGTTAAACAAGGCAAACGTCGTCAAAGCATCTTCTTTTCTGTCATTAC
AAAATTTGCTATGAAACATTCCTTGAAAGAAATCGAGCATTACTACGCGA
GCAAAGCTAAACGTTCTCCACACGTTGTCGGACATTACATAGCTGGTGCT
CGTGTCTTTGGCCTTACTGATAAAGAATTACGTAAAACATGGAAAGAATT
CTCACACGCCAGTAAAGGGAAAGACTCCCCTTACGCTCAGCCTTTGAACT
TTATAGTCGATGATAACAATAACGgaaaaaagaagatgaagaaaacaGTC
GTTCGTGCCATGCCGCGTGATaaaaaaaCAGAGTTGAAAACTTCTGTGGC
GAATGATGATTCTCATAAGAAGTTCGTCTTCAAATTGAAGAAAACTTCTA
AACCCACCTCACCACAGCCTGTACATTGCACAAATACTGCCATAGATGCT
GCTGCAAGTGAAAAGTCAGAACTCAATATAGAATGTTCTCCTCGCTCTGT
ATCTCCGTGTCCTGGGAGTCCATCTAAATCGCCTAGTCCGTGCTCTGTGC
GATCGACAAGCTCCACCCGAAGTGGTGGCACCCTATCACCGACATTAGAA
AAACGCGACGGTTGGACACCACGACATCGACTTCCAATGACTAAAGTGAA
GCTTCCAAAATTTACGTATtctaaaaaggaaaagaaactgGTCGTCAAAG
ATTTGGATAAGATTCGACAACGCGTCAAAAAGACACGTGAAGCTTATCAC
GATGACCTcattaaagaaaaagaagacactgCAAAAGAATAttggaaaag
tttaaaaacgGGACAGATTTCTTCGGAACGTTTACACACGAATTTCAAAC
GCGTTTTTCGTTGTTATTCGCCTTCAAATGATGGCGAATTCGGTAATTTT
GCATCGAAACATCAACGAAGTCCCGAACGTGCTTTGGATCTGCACCGTAG
TAACGGAGGATTTGTACATTGActaacgttctccttttttgtttttagtt
tcgtttcgttttGCGACTGTTGGTCGTCGCTGgtcaaaaatgaccaaaaa
gaaaatgttttcgtgtttttgtttaCATGTGTTTTCATTTCACACTTGAT
ACATAGTTTAGCAGCTTCAGCCACCATGGTTCTTGATATATTGAGCTCAC
CAGAACATTTGCAAATGTTACAATGCTACGGAGATGAGGAAACACAGGAG
GAAAATCTCGTTGGAAGGGATTAtgatattgagatttttcacGAGCCAGC
GAATTTTAAACCAAGATCGGGGAACGATCATGAGGCTCCGAAGCAGCGAC
GTGTGACGATTGCTGATATGCCTGTCAATCATCCCCAATATCCTCCTGGG
TATTCCGGCGAAGggAGACAAAGATGCCGAAGCCGTTATTCAACCTTCAT
TGCGGGTATCAATCAATTCGATCCATACCAAGAGTTGACGGCCACGCAAA
TTGCTGCTTTTCGTCAAGTCTTTGACATGGTTGACAGAGATGGTGGTGGA
AGTATAGATGCCAACGAACTGTATTACAGCATGAGAGATTTAGAATCTGG
ATTAATATTGGATGAGATCAAAGAGATTTTGGAAGAGCTTGATCGTGATG
GGAACGGTGAAATTGATTTCGAAGAATTTCTTTACATGATGACCAGCATG
AGCCTACAAATCAAAGagGCTCAAGAAGATAACGTATTGGTTAAACAAGG
CAAACGTCGTCAAAGCATCTTCTTTTCTGTCATTACAAAATTTGCTATGA
AACATTCCTTGAAAGAAATCGAGCATTACTACGCGAGCAAAGCTAAACGT
TCTCCACACGTTGTCGGACATTACATAGCTGGTGCTCGTGTCTTTGGCCT
TACTGATAAAGAATTACGTAAAACATGGAAAGAATTCTCACACGCCAGTA
AAGGGAAAGACTCCCCTTACGCTCAGCCTTTGAACTTTATAGTCGATGAT
AACAATAACGgaaaaaagaagatgaagaaaacaGTCGTTCGTGCCATGCC
GCGTGATaaaaaaaCAGAGTTGAAAACTTCTGTGGCGAATGATGATTCTC
ATAAGAAGTTCGTCTTCAAATTGAAGAAAACTTCTAAACCCACCTCACCA
CAGCCTGTACATTGCACAAATACTGCCATAGATGCTGCTGCAAGTGAAAA
GTCAGAACTCAATATAGAATGTTCTCCTCGCTCTGTATCTCCGTGTCCTG
GGAGTCCATCTAAATCGCCTAGTCCGTGCTCTGTGCGATCGACAAGCTCC
ACCCGAAGTGGTGGCACCCTATCACCGACATTAGAAAAACGCGACGGTTG
GACACCACGACATCGACTTCCAATGACTAAAGTGAAGCTTCCAAAATTTA
CGTATtctaaaaaggaaaagaaactgGTCGTCAAAGATTTGGATAAGATT
CGACAACGCGTCAAAAAGACACGTGAAGCTTATCACGATGACCTcattaa
agaaaaagaagacactgCAAAAGAATAttggaaaagtttaaaaacgGGAC
AGATTTCTTCGGAACGTTTACACACGAATTTCAAACGCGTTTTTCGTTGT
TATTCGCCTTCAAATGATGGCGAATTCGGTAATTTTGCATCGAAACATCA
ACGAAGTCCCGAACGTGCTTTGGATCTGCACCGTAGTAACGGAGGATTTG
TACATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15504MSTRG.15504Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15504.1.p1.exon1MSTRG.15504.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15504.1.p1.exon2MSTRG.15504.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15504.1.p1.exon3MSTRG.15504.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15504.1.p1MSTRG.15504.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137_pilongenomesc0000137_pilon:533363..536650 +