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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000135_pilon:164425..169024+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.15362.1.p1 ID=MSTRG.15362.1.p1|Name=MSTRG.15362.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4600bp|location=Sequence derived from alignment at sc0000135_pilon:164425..169024+ (Clytia hemisphaerica_ch_hm2_pilon)
aataatactttACTCTTTTCAGGAAAGAATAATGTAGATAAAATATGCCA
AGACAATGATTCCATCGAGAATACAAACAAAGATCCAAATAGGATGTTTT
GCTTTACTGATATGTGTTTTTCTTTCTATGCTTCATTTTCTTTGTCAGAG
AGGTAAGACTATtatctttttcaaacatttcattTAAATCAGTAATAAGA
CGACAGAGGAGCCCATATCTCAACTTGAGTGAATACAAAACAAGTCAATA
GATCATTTTCTACCCTCTTGCATCTGTCAGTcaagttatttttttgaatt
tttcttgatCACGTGAGAATTTCAAGCCCCAGAAATAACTAATGCTTAGT
GACGAAAAAGTACAAAATTGAGGACAAAGAGGTCTTTGACCTTGAGAGAG
GTTTGACCTTCCTTATGACAATATTTTTACCAGCAGTCccaaaatctttg
tttttctgcAGTCTTCCTTCTCGAGAATGTATTTTTCTGTATATCCTTTA
TACattgaaagagaaaaattttcacatttgCAATCTTTTCCACCAAATCT
AATCTCATTGTCCATAAATTGATATCCTCGACaccaccaaaaaaaaaaat
tctcaaaaagcTTATTGTTTGACAATTCTATGGTTTGACTGATATTATTT
ATCTAGTCCATCTTGTTTATAGATATGCACCCGAAATGTTCTTGAGAtat
ctgatttttttctttatagagGATACTTCGGCAGCAATAAACTTACTTCA
CTTGACAAagaataaattattttcattgaagaaaaaagttgatCTGATTG
ACAGAAAGTCTCGCACATTAAGTAAAGACAATACTGACGTCACATTGTTC
CTCATTACACCAACTTATGCTAGATACACACAACAAGCTGATCTTGTTCG
TCTATCCTACACTTTAAAACATGTTGACAATCTGCATTGGATAGTTGTTG
AAGATTCTGAGGTTCAAACTAAACTAGtgagaaaagttttaaaagactCT
CAAATTACATATACACAGTTAAATGTGAAAACTAGAAAAGACTTACAACT
TGGTGAAAATGATCCAAGGTGGAAGAAACATCGTGGTGTGGATCAAAGAA
ACCATGCCTTAGAATGGATCCGTTTGAATGTAGGATGGAATAGAAGAGGC
GTTGTTTACTTTGCCGATGATGACAACACTTATCACTTAGATTTATTTTC
AGAGGTATGTACATGTgaagaaatttaaagaatttctgtctaactatctt
ctttcaggagatttgggtggcagagcagcatatgcattttgtctttatta
ggactcgtcagcactgcatacacAGTCATAATGTACTCGGTAAAAAGATG
GAACTCCATTCTAAAGAGGTCTTGTAAAAATGCGTTTgcttaaaaatggt
agactctgAACATATTCAGATCATATTCTGAAATAGGTGAAAGTCTTTTG
TTCCTAAAGGAattttatttgacattatttcatcttttttaccatttttt
agacattttaaatatatggaatttttacagagcaaataattcttttttgg
aAGGAAAtgggtttcaaaaatttttacccGTTTAGAGTTTTGTAAATTGC
TTCTCCCAAGAAAAGGTTCGCTTTTCTAAGgtatatgaattttttttaga
aatgacAATTATATCTTTGTAATGgtcatgttttgaattttttcttcgcT
TACAGATGCGGACAacaagaaaagtgtcaatttggCCAGTTGCATTAGTA
GGTGGATTACGATGGGAAGGTCCATTTGTAAGAATGGAAAAGTCGTCAGA
TTTTTCACTGCATGGAAGGTCGGCCAGCGGGCTTTTCCTGTTGATATGGC
AGCATTTGCAGTGAACTTGGATTTGCTAAGAGATAATCATGTTTTGATAA
ATCCTCAAGTAGAACGTGGTTTCCTTGAATCCGATTTTTTAGAACAATTA
AAGATCACACGTGATGACCTAGAAGCTAAGGCAGAAGATTGCTCTAAGGT
AAAGAAATATTTAGGGGTTGCTCTCAAAAGTATGTAGTCTGAGTAGAGAG
CACAATAACTTACAATATTTACCTCCCAATTTTTCCCTCTGCGCTCCAAT
CGATCGGCTCCTTGCCATCGATTAAAATCAACTGACGCTTGATTTTCAAC
ATGATGGGTACTTTAGTTGATGATGTATCGGCTGATGCCATAGGTTTAGC
CTCATTGAAAGATACTTTCATGAGCGACGTGACTAAATTGGATCGGTTAT
tgcaaaaagaagaaatacaaTGAAAGCTTCTCTTGAAACTTCCCAAATCT
TCTTTAACTAGATTACTTCATCAAATTTCGTAATTATTTATCCCTAAATG
GAAAGCCGTTTATTACAAAAACCCTTTGTAAAGATGTCATCATTCATTGA
TCATTCATTCATTAATATAATTAAATATATCTTTTAAATCTTTTCGGTCA
AATATTTCTTCTTTGCACTTTAGATATTGACTTATATTTTCCTCTTACCT
TTAGATCCTTGTATGGCATACTCAAACGGCAAAACCGAAAATGAAGGAAG
AGATTAAGCTAGTGAAACGAAATGGTGTTGGATCAGATTCCAAAATCATT
ATTTAAGAAGCTAGGTATTTCTTGAGATCTTCATTATATGGTGGCTACTC
AACTTGCACAATCATTTTCGCAATTATAAATTAttcaacacccccttctc
acagatccggtaggattctttcagcccgtgcaatgccggacaaaaggttg
tagacaaatgaaatttcagtgaacaatgatgagaaatagagcaaaatgac
tcttcaatgtgtctgaaaggggatggaagttaagaaaaacacttttgaag
tcgttgcattgcttttgaattgcttttgagggaaccacaagcaaaaaatc
agcgttttgatactggtgtaagccagttaatcaagcccttgtggttagac
tgcagtgggtgactttgaaagactttgggtaggtttggaaagcacccaaa
gcctcttgggaacttgtttttgatcgatattgaagtattttgcaaatatt
gcagaagtctacaaaccttttgtccagcattgtggggtgaaaataacgga
ctgaaacacAATGGTGATTGATATTCCCACATTTTTCATgcctggggatt
taaattcttttgttctcaagtcagaaaattcagtggggatgggaaaaata
tcatcatattttgcagtgaggactggcttatttgattattttcagtgggg
acaaaagttGGGGGATAATTTTCCACAGGGGATGATATTtaggccaattt
ttccaattgaaaggggtcccagtgggtctgtgagaaaggggtgttattca
attttgaaaattgcgATAAAAACAAATTAACGAAATAACTCTCATGGAAA
GAGACTCTTGCGaattaagttttgaaaatacAATTCTTTTTATATGCATA
ATGTTTAGAAACATACAGAGCCTCAGATTTGCAATAAAAATAATGCTAAG
CATAGCTCGAAGTTAGGACAATTCAtcattcaaattttgctttgaaaagt
GGGATCAATGAGACAGGTAGGTGGACAACGAATATAGAAAATtcagataa
ttttaaattgAATACTGTACACCTTTTTATCAGAGTGGATGAattcataa
aaaagtaaaagttttttttaacgaGAATGAACTTGCTCAAATTAGATTTG
AGTgcttttaaattcttttaacCTCGGTTAAAGACAAATTGTGCTGAATC
AACACAAAAATCTACCCATCAAGAGTCTATAAAAGTCTCATTTTTTCTTG
TGGTCGTAGAACCCATCTTCAAAGAGTATTCGTAACTCTTTGGAACTATT
TATGTGACatgaattttataagaaatttttaatgaaagcTAGAAAtaatt
tattgtaaagttttaagaGGATTTCACttttggacgaaaattatttgaaa
gtatttcgttttatttattttaaaaaaggtaaatttttaaggagcataga
tttttaaatttattaaattaGATATTGTCTGAATAAAGTAGGTTTAACCT
TCAGGATTATACCAACCACATTATTTATTAgtgtgaaggtagagagtcta
tcacaaTATTTTTCCCCTAACACCCCACTGTGTCTCACTAACATTCCGCC
GATTGGTGGTGTGAAAGTTTTGATCACAGACTTACACCGCAACGGACTGT
GTGTTAGGGTGTTAGGGGAAATATTGTGATAGACTTTCTACCTTCActca
atccggctgataatcgaagtatcgattgacgtcaaatgagtTTAGTTAAG
CTcaaaattgcagatgtagaacgataaactcggtatacattTATCATTTA
TTCTTGCTAATCATATTCTTATTTGTTCTGAAGATAATTCATAATTGTCA
ACAATTATTAAGTATGATTTTTCTTTGACGACGAAGTTCGgtactttttg
taaaagaaactttttgatgCGGGTTTAAATCAAAAGACAATCATTAGGAA
AGCACATCATTGcgatattattttatttttcagcataaTAGACAAAAATT
ATAACATGCTCTGTAGAAAATTGAGATGACGTCTATAGCCTACAAATTGA
Coding sequence (CDS) from alignment at sc0000135_pilon:164425..169024+ >MSTRG.15362.1.p1 ID=MSTRG.15362.1.p1|Name=MSTRG.15362.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2223bp|location=Sequence derived from alignment at sc0000135_pilon:164425..169024+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATTCCATCGAGAATACAAACAAAGATCCAAATAGGATGTTTTGCTTT
ACTGATATGTGTTTTTCTTTCTATGCTTCATTTTCTTTGTCAGAGAGagG
ATACTTCGGCAGCAATAAACTTACTTCACTTGACAAagaataaattattt
tcattgaagaaaaaagttgatCTGATTGACAGAAAGTCTCGCACATTAAG
TAAAGACAATACTGACGTCACATTGTTCCTCATTACACCAACTTATGCTA
GATACACACAACAAGCTGATCTTGTTCGTCTATCCTACACTTTAAAACAT
GTTGACAATCTGCATTGGATAGTTGTTGAAGATTCTGAGGTTCAAACTAA
ACTAGtgagaaaagttttaaaagactCTCAAATTACATATACACAGTTAA
ATGTGAAAACTAGAAAAGACTTACAACTTGGTGAAAATGATCCAAGGTGG
AAGAAACATCGTGGTGTGGATCAAAGAAACCATGCCTTAGAATGGATCCG
TTTGAATGTAGGATGGAATAGAAGAGGCGTTGTTTACTTTGCCGATGATG
ACAACACTTATCACTTAGATTTATTTTCAGAGATGCGGACAacaagaaaa
gtgtcaatttggCCAGTTGCATTAGTAGGTGGATTACGATGGGAAGGTCC
ATTTGTAAGAATGGAAAAGTCGTCAGATTTTTCACTGCATGGAAGGTCGG
CCAGCGGGCTTTTCCTGTTGATATGGCAGCATTTGCAGTGAATGATTCCA
TCGAGAATACAAACAAAGATCCAAATAGGATGTTTTGCTTTACTGATATG
TGTTTTTCTTTCTATGCTTCATTTTCTTTGTCAGAGAGagGATACTTCGG
CAGCAATAAACTTACTTCACTTGACAAagaataaattattttcattgaag
aaaaaagttgatCTGATTGACAGAAAGTCTCGCACATTAAGTAAAGACAA
TACTGACGTCACATTGTTCCTCATTACACCAACTTATGCTAGATACACAC
AACAAGCTGATCTTGTTCGTCTATCCTACACTTTAAAACATGTTGACAAT
CTGCATTGGATAGTTGTTGAAGATTCTGAGGTTCAAACTAAACTAGtgag
aaaagttttaaaagactCTCAAATTACATATACACAGTTAAATGTGAAAA
CTAGAAAAGACTTACAACTTGGTGAAAATGATCCAAGGTGGAAGAAACAT
CGTGGTGTGGATCAAAGAAACCATGCCTTAGAATGGATCCGTTTGAATGT
AGGATGGAATAGAAGAGGCGTTGTTTACTTTGCCGATGATGACAACACTT
ATCACTTAGATTTATTTTCAGAGATGCGGACAacaagaaaagtgtcaatt
tggCCAGTTGCATTAGTAGGTGGATTACGATGGGAAGGTCCATTTGTAAG
AATGGAAAAGTCGTCAGATTTTTCACTGCATGGAAGGTCGGCCAGCGGGC
TTTTCCTGTTGATATGGCAGCATTTGCAGTGAATGATTCCATCGAGAATA
CAAACAAAGATCCAAATAGGATGTTTTGCTTTACTGATATGTGTTTTTCT
TTCTATGCTTCATTTTCTTTGTCAGAGAGagGATACTTCGGCAGCAATAA
ACTTACTTCACTTGACAAagaataaattattttcattgaagaaaaaagtt
gatCTGATTGACAGAAAGTCTCGCACATTAAGTAAAGACAATACTGACGT
CACATTGTTCCTCATTACACCAACTTATGCTAGATACACACAACAAGCTG
ATCTTGTTCGTCTATCCTACACTTTAAAACATGTTGACAATCTGCATTGG
ATAGTTGTTGAAGATTCTGAGGTTCAAACTAAACTAGtgagaaaagtttt
aaaagactCTCAAATTACATATACACAGTTAAATGTGAAAACTAGAAAAG
ACTTACAACTTGGTGAAAATGATCCAAGGTGGAAGAAACATCGTGGTGTG
GATCAAAGAAACCATGCCTTAGAATGGATCCGTTTGAATGTAGGATGGAA
TAGAAGAGGCGTTGTTTACTTTGCCGATGATGACAACACTTATCACTTAG
ATTTATTTTCAGAGATGCGGACAacaagaaaagtgtcaatttggCCAGTT
GCATTAGTAGGTGGATTACGATGGGAAGGTCCATTTGTAAGAATGGAAAA
GTCGTCAGATTTTTCACTGCATGGAAGGTCGGCCAGCGGGCTTTTCCTGT
TGATATGGCAGCATTTGCAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000135_pilon | genome | sc0000135_pilon:164425..169024 + |
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