MSTRG.15266.3.p1 (mRNA) -

Overview
NameMSTRG.15266.3.p1
Unique NameMSTRG.15266.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000133_pilon:725870..730241+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15266.3.p1 ID=MSTRG.15266.3.p1|Name=MSTRG.15266.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4372bp|location=Sequence derived from alignment at sc0000133_pilon:725870..730241+ (Clytia hemisphaerica_ch_hm2_pilon)
CTGTTTCCCGctgaatttttatcttttgatttaaaaaggaATTACATATA
GGGTATAATGCTAGCTGAATGATAATTCTGACTTGATTGAACATAATGGT
GGAGAAACTTGGTGAAAAGACTGCTTTATGGCAGCGATTATATGTTGCTG
TAGGTATAAACAAATTGTTATTTTCTTAAGAATGCAACGTTTCTTAGata
taaaacaaacaaagacaATTTTTATGCGTGcggagataaaaaaaattatt
gacatATGTAAGGAAAACAATCTTGATGTGTCTTGACATCCTTGAGTTAA
ATGGTACGAGTGGTGgtataaaaattttttgagaaaggTCGCTGATAATT
TTAGTTTATATTTCgtagaaataaagaaaagagaaagatggtaccgaaaa
gccaaaaacaaaacaaacttgaaaTCGTGGAATACAACATTGAAAAGCAT
TCTGGGGAAGTacaaaaaattttagatgaacACTTAATACCAATTTACTT
AAAACGTATGGAAATCACACAAGATGAAAGATTGAAATATGCACATATTG
AAAATGTCTTACATCCTAACCTAGCAAAGAATCccaaattcgaaaatttt
tctatGGTAACTTTAGACGAGGCTGGTAAAGTTGTTGGTCTCGGATTAAG
CTACATGGTAACTAAGCAAGACTTTCAGGAGACTTTTATTGACCTTAATC
TTCGGGTCGTGAATGACTCAAGCTACAAAGAAAGTATCCGAAAATATTGC
CAACACAGATATGCAGTTTGTTATCCACTTGCAAGATTTTTTGACGAATA
CAATATTGATCAGATGGTTTATACAGAAGATGCCGTTGTCTTACCCCAAT
ATAGAGGTCGAGGAATAAATAATAATATGTATGAATTAATGATGGCGGAG
TTTGGTCACAAGCATGCTTTCTTTGCCGAAGAGATGATGCCTGTACAAAA
TATTGTGACGTCAGGAGGACTCAAACATGAGTTAGATGTCATAGGAACCT
GGGACTCAGATGGATGGTTATGTATTGACCGACAATTATCTTATGATGGT
TATCTTTGCCCGTTATTTTTTAAACCACTTACACATGTACATAAATCTAA
ATTGTAATTTGTAGCTCTACCCTAAacacctctgtgtcacagacccgcta
ggACCCgtagccccactggaaaatttgccaaaaaattcgTCCCcagtagg
aaaataccctgaaatttcagccccactgggaatttgactttgatttcatc
cccattcgagatccaatgtttaaaaattgcacttcaaaaccatcctcact
ggattttttaaccttggaacaaaaattaaatagaatttctatccccattg
agattgcaatatgaatttttatccccactgaggaaaaagttccactgggg
ctgtgtgACAGGGGTGTCTCTAAATATGTGTCTTTTTCTTCACAGAATTT
TTCTATATTCTTTTACTTGTCAGAAACACATGATTCAGATTTGCAAATCT
TGACCAACATTCAGTAAACTCTTCGTTGGAAAAAAGAATCGTGAATTTAA
GGCTATAGGAgttgtaatttgaaaattttgattcatCATTACTCTGtacc
aatttttttaattttgttgataagaatttttttacattttagatttGTCA
AGAATACAATGATTTGCATTGTATTTGCATACAATGATTTGCATATCATG
ACCAATAATTCCgataatttcaataatttgtATTGACAGGGTATTCTACA
CATCAAGGTAGACTTAAACTTTGTATCAGACTTAAAATTTACCTAAGCCA
TAGACGTTTATCAGATGTTTACTATCTCGCTACGTTTTGCTTTTAGTACA
AAAATAACGACATACAGGTCCTTTcttagtctggagatccatactctatA
TTCAAACTTAAAacacataagcaaaaatcccatcaaaagctactcattga
gagtatggtatttttgatccagtttgaatttgtttacatttggtttgaat
ttcatgccaaaaaagccgttgataaggttagccaatcaggttcgcgcact
tccaatcaaaacagtaatatcacgtgatttcaacaattgtttaacagcca
atagaattctgcgaccagattGTTGGGCATCaacaaaaatacccggctac
tctgttatttctatcgATATTTCTacattattattcgttttaactaaatg
ctatactttgaaaccacacgaacagagtagacgggtctcccagctagtcC
TTTCTTGGTGTCTTAGTACTTTAAAAATTCAAGAAGTAGTTTGCACTGTG
CAAGGCTGAAGAATCATATAGCTTGGTCTAACTATATTGTTCACGGATCC
CTCAAATCCATACAGTAATTTTGTAAAAGGCggaaaaataacgaaataaa
TTTGTTAAATCTTCAAACTTGTTTCTTTACTGACATTGTAATTATCAAGC
TGAATACAACATTTTTGTACAAATATTAGTAATTTtaattaaaatagaaa
taaattaAAGACTATCATTAAACAGACAGAACATGTCTTTTACTTTTCAC
AATACAaccttgtgtcacagacccgctgggaccccagccccactggaaaa
tttagcaaaaatttcgtccccggtgagaagataccctaaaatttcagccc
cactgggaaattgacttttatatcatccccattcgaaattcagtgtttaa
aaattgcacttcaaaaccatccccactgaattttttaaccttggaacaat
agaatttctatcaccattgggatttcaataggcaTTTTTATCCCTGATGA
GAAAAAggtccaccggggctgtgagacaggggtaccGGGTTGGTGCGAGT
CTCCGGGTATGTCTTTCTTAGGAATCGgcagttcttattttttggcactt
atAGTCTGTTCTTATATCCTGTTCTTTTCGCCAGGGTAAAATTGAGATAC
GCTAGCcttattttactactttaacccttaatttcctaaaaattcAGCTA
GCCCAGACTCatttttgttcttaaattgttcttattttctgagcctcatt
gttcttataaaactattctcataaaaaagtacaTAAAGCTTtgttcacat
gtacgtaaaatttgaAGTTTGCTTACGTAACTCTACCGTAACTTCAAAGT
AAGATTTAACGTGCATGTCAAAAAAGCATAATGTGTATCATTAATCCCga
aattattttaatattataaattatGTATGTGATATATAGAACTATAACTT
TGATTTAATATGAAAAGGCATGGGTGGTCTAAAATATAATGGGCAAACAT
AGCCATCATAAGATAATTGTCTATCAACAGTTAACGTGTTGTCTGTGTCC
CACGTTCCTATAGCTTCTAACTCATGTTTGAGTCCACCTGACACCATACT
TTGTACAGGGATCATGCCTTCGCCAAATATAGCATATTGATGTCCAAATT
TCTCGTAAATGATATCATTCATGCGTTTATTGACACCTTTTCCTCTGTAT
TTAGGTACAACAACGCTATCCTCAATACTAAGCATCTTGTCTAGGTTATA
TTCGTCAAAATATTTGGTCAATTGCTGGCATATTGCGTATCTATGTTGGC
AATATTTTCGGATACTTTCTTTGTAGCTTAAGTTGTTTACAATCTTAAGA
TTAATGTCGATAAATTCCTCCAGGTATTGTTGCTTGGTTACCAAGTAGCT
TAATCCGAGACCAACGACTTTACCAGATTCATCTAAAACCACcacagaaa
atttttcgaatttggaATCCTTTGCTAAATTAGGAtgtaaaatatcttca
acctcTGCATATTTCAATCTTTCATCTTGTGTGATTCCCATACGTTTGTA
ATAAGTTGGTACTAAGTATTCGTCCAAAAGTTTTTGTACTTCCCGAGAAT
GCTTTTCAATATTGTATTCCACGATTTCCAAGCCTTCTATCTTGTTTTTG
AATATCATCGTGATCGAATATTTTCCTTTCCACTaaaaaaaTGAATCCCT
AATCTCTTCATTAATTTTAACAACTTTATACCATCGTTCAAGAACGTCAA
GACGTGTTCCCTTCCTCttacgtcaaaaaatgttaaCCTCAGAAATTAAA
GTTattgttttgtattttgtataagaaactttgtatttttataaagGAAT
TACCCTCATATACACTTCTCTTTCGTGCTTTTCAGCACGTTTATCCAATT
TCCCATGCCTCTTGGAAGGCAAATTGAGAAATACAAATCAAGGGAGGTTG
TTTACAAATTAGGGTGCTTAGGATGCTGCAATTCAAAGATATCTTCGAAA
TGAAGCTGTTAGCTTCGcttgtttattttgatattttaagaaTAAGAATA
GTATCCCAACCCAAGATTTTCC

Coding sequence (CDS) from alignment at sc0000133_pilon:725870..730241+

>MSTRG.15266.3.p1 ID=MSTRG.15266.3.p1|Name=MSTRG.15266.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1530bp|location=Sequence derived from alignment at sc0000133_pilon:725870..730241+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAGCGATTATATGTTGCTGTAGaaataaagaaaagagaaagatggt
accgaaaagccaaaaacaaaacaaacttgaaaTCGTGGAATACAACATTG
AAAAGCATTCTGGGGAAGTacaaaaaattttagatgaacACTTAATACCA
ATTTACTTAAAACGTATGGAAATCACACAAGATGAAAGATTGAAATATGC
ACATATTGAAAATGTCTTACATCCTAACCTAGCAAAGAATCccaaattcg
aaaatttttctatGGTAACTTTAGACGAGGCTGGTAAAGTTGTTGGTCTC
GGATTAAGCTACATGGTAACTAAGCAAGACTTTCAGGAGACTTTTATTGA
CCTTAATCTTCGGGTCGTGAATGACTCAAGCTACAAAGAAAGTATCCGAA
AATATTGCCAACACAGATATGCAGTTTGTTATCCACTTGCAAGATTTTTT
GACGAATACAATATTGATCAGATGGTTTATACAGAAGATGCCGTTGTCTT
ACCCCAATATAGAGGTCGAGGAATAAATAATAATATGTATGAATTAATGA
TGGCGGAGTTTGGTCACAAGCATGCTTTCTTTGCCGAAGAGATGATGCCT
GTACAAAATATTGTGACGTCAGGAGGACTCAAACATGAGTTAGATGTCAT
AGGAACCTGGGACTCAGATGGATGGTTATGTATTGACCGACAATTATCTT
ATGATGGTTATCTTTGCCCGTTATTTTTTAAACCACTTACACATGTACAT
AAATCTAAATTGTAAATGGCAGCGATTATATGTTGCTGTAGaaataaaga
aaagagaaagatggtaccgaaaagccaaaaacaaaacaaacttgaaaTCG
TGGAATACAACATTGAAAAGCATTCTGGGGAAGTacaaaaaattttagat
gaacACTTAATACCAATTTACTTAAAACGTATGGAAATCACACAAGATGA
AAGATTGAAATATGCACATATTGAAAATGTCTTACATCCTAACCTAGCAA
AGAATCccaaattcgaaaatttttctatGGTAACTTTAGACGAGGCTGGT
AAAGTTGTTGGTCTCGGATTAAGCTACATGGTAACTAAGCAAGACTTTCA
GGAGACTTTTATTGACCTTAATCTTCGGGTCGTGAATGACTCAAGCTACA
AAGAAAGTATCCGAAAATATTGCCAACACAGATATGCAGTTTGTTATCCA
CTTGCAAGATTTTTTGACGAATACAATATTGATCAGATGGTTTATACAGA
AGATGCCGTTGTCTTACCCCAATATAGAGGTCGAGGAATAAATAATAATA
TGTATGAATTAATGATGGCGGAGTTTGGTCACAAGCATGCTTTCTTTGCC
GAAGAGATGATGCCTGTACAAAATATTGTGACGTCAGGAGGACTCAAACA
TGAGTTAGATGTCATAGGAACCTGGGACTCAGATGGATGGTTATGTATTG
ACCGACAATTATCTTATGATGGTTATCTTTGCCCGTTATTTTTTAAACCA
CTTACACATGTACATAAATCTAAATTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15266MSTRG.15266Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15266.3.p1.exon1MSTRG.15266.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15266.3.p1.exon2MSTRG.15266.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15266.3.p1MSTRG.15266.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133_pilongenomesc0000133_pilon:725870..730241 +