MSTRG.15166.1.p1 (mRNA) -

Overview
NameMSTRG.15166.1.p1
Unique NameMSTRG.15166.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000132_pilon:311201..314610-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15166.1.p1 ID=MSTRG.15166.1.p1|Name=MSTRG.15166.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3410bp|location=Sequence derived from alignment at sc0000132_pilon:311201..314610- (Clytia hemisphaerica_ch_hm2_pilon)
CTAGTTTCTGAAGAGTGAAGACGCTTTTTGAAAGGTCTCACTCATTTCGC
TGATATTATCGATTTGAATCGCGTTGATCGAGTCGTATTCGGTGAAAAAT
TTATAGGTAAACAAAGGATGGAATCCCCTTTAGCAATGGATTCAAATGAA
ATTATTTTTAACAATCAAAAACACAAACAACGCTCCATTATGCAACCGTT
CGATTGCAAAGACACGTGGGCTGATCTACACAAACAAATGAATGATTCTG
TTGAATACACAGACTTCTTCCGATTCAGTCAAAGTATTTACAAGAATAGA
ATCAACAATGATGTCAACTTTCTTGAAATCATGGAAAATCCGGAAGAAAT
TAAAAGCGGATTCAGATATCTCCAATCGAGGTAAACAAATATCAAGAAAT
ATTTCAGAAAACCCTTTATTAGTCAGCCCCGGTGACTCTTCAAATCGGTT
CGAAGATTTTTTTCCCGCTCGTCGTTAAGACTTTCATTTTAATTCCGATT
TCGGATTATTTTCGGGAAACAGGATTTCGGGATTATTTAGCGCGCGAAAA
TAATTTTTTCTTAGCAAGATAAAATAAGAAAAGAAAAAAAACACATAACA
TAAAAAGAAGCCTTATAATTAATAATAAGAAAAAAAGAAGAGAAAAAAGA
TTCTTTATTTGTGTCATATTCCATAGTTAATAAAAGATGCTTTTGCATTG
TAAATAAAGAGAGCTAATTATAGAGAAAGCGTAGATGGAGAAAGTGAGTA
TCAAAGAAATTTTTTTTCTTCGAATAATGTTAAAAGTTATATACGACTTG
TAGACTATTTCTTCTATCTGGGTCTTTTATTATTCTCATGGAAAGAGTAT
AACAACAACGGAATAAATCTTTTTCACCGACTTCTGCTTTGGATACGGAT
TCCACTATGCACTGCTCTGTTTTCTTCTGAACGTTTCAAGCAAATAGATA
CGTTCTTTCAAACTGCTCAGATTTTAACAAAGCCAGATTTCTTATCTGTA
CTTCCTATTAATCATTCTAAGCCTTCTAAGCATTTTGGGCTGACTTTCCA
GCGCAGCTGGTTTATTAAAGTATAAACCGGTACGAGGCTTCTTTGGCCTG
TCAAGACCATAAGGCAGCCTTCCCCGGAGGGGGGGGCAGTCAGGCAAATT
GACCGACGGGTATGTGCGGCGGTTAAGGGTATGTTTTTCAAATTATCAGA
AATGCACTGTAAGGGTGAAAATTTGTGCTCGAGAATCTTGATTTTTTTGC
TCTAAAAGAGTTTAAAATTTATAAAAAATGCACTGTAAGGGTATTCTAAA
AGCCAATTTTTTCGCCGCACATACCGTCAGTTTGTAAACCCACTGCCCCC
GGACCACAGCCTTCGCATATACTTGTTGAATGTAAGCTCTTCTGACTTTA
TTGAACTATAAGTGAAAACTAAAATTATTACTTCAGATGCAACGAACTTC
ACAACTATGTCACAGAACTAGAATCAGAAGTTGATAGCTCATCCAGCATC
ATCAAGCAGTTAAAGAAATTTGCCTTCAAGCAAATGTGTTCAGCTGAGAA
GAAACTTTTGAGCAACATGTTCAACATTTCATCAGAGTCGAAATATTTGC
GGGGGAATTTTCACGATCATCAGTTTGTTTACATCGATAATTTGGTGTTA
CTTGATGAACGATTGGATGAAGTCGAGGATGTTGACGTTTTGAAGAAAAT
GTACACTTATCTTAAACAAAGGTGAGGAACGTTTGGGAGGAAATATTTTT
CATGTTCACGTTTTTATTACAACTCTCCAGAAGGGAGCCGGTTAAGTTAA
AAGGCGGCTACCTGTAAAAGCCAAAATCTTCTTGTGGTGATTGCAAAGAA
ATCTTACTAACCTCAGTAATGGAATCAAATAAACGTCTCAAATTGACAAT
AAGTCACTGTTATCTCTCTTTTTCAGATTCACTGAATTGCAGAAATATTC
GTTGATTCAAGAATCAAAAATTGAAGACTGCAAAAATCTTATGGATGAGT
TATTTGGAAAAATCGAAGGAGAAAATGAAGAGGATGCATTTCCATTCGTT
GACTCTCCTGAGGATCGAGTTGGTCATTCTCCCGAGGCAGAAAAACGAGT
TGTTAACTCTCCCGAAGCAGAAGGACGAGTTGTACACTTTCCCGAAGTAG
AAGGACGAGTTGTTCACTCTCCCAAAGAAAAAGGACAAATTATTCGTTCT
CCCGAAGCAGAAAGAAGAGTTGTTCACTCTCCCGAAGCAGAAGGACGAGT
TGTACACTCTCCCGAAGCAGAAGGACGAGTTGTACACTCTCCCGAAGTAA
AAGACTCTCCAGTTTCTTACCATCGAAGAACACCAGTGGATGTCGAACAA
AGGAAAGTGATGTCACCAGAACACGTCATGAGATACACACCACTTGATGA
AGATGATGACTCATCATTCTTTGAAAATCAACGAGTTTCTCCAGAGCTGG
AATCACCAGAAGATCATGAAGAATATGATTATGAAAACGAGTTTGACGAG
GAGCAGATGTATTATGATAACCGTTCTGTGATTCGAAAACCACAAAGAGC
TGTCATGCCGGAAGCTGTTGCTCCAAAGGGATTACCACCAATCCCAACTC
ACGTCGTTTCTAACAAGAGAATTGCTCCTGAATCCAAATTTAAAATCTTC
AAAGAAAAAGTCAAATCTTACAATAACATTGGGTCTACTGGTTATGGAAA
ATCTAAACCAAGACGAAACGAATTCAACATGGCCACTATTTTGCCACCTG
TTCAAAGCAGAGTCGTCAAACGCCAGCCAATTGTTGTAGAATCACAACAA
AGCATGCATTCTGAATACGAACTTGCCATCAAACGTACATCCATCAAAGG
AATCGTCAAACCAAGTCTTTTGAACAAAGATATTTTCCGTTTACGTGATC
CGTCAGTTCGTGTACGTGGTGCACCAAAACAACAAGACGTTCACCAAGAG
TTGAATAAAACTCCAGTTTTACCGTCCATCTTTCAACAAAGAGATCTCAT
TCAAACCGTATCTCCACAAAACCAAATTCGCCAAAGCTGTGTTGCTCCAC
AAAACCAAGCTCCCCAAACCTTAGCCTTGCCAAGGATTCCTCAACCACCA
ATTCAACCAAAACAATCCATCCAACAAACTGTCTCTAGAATTCCACGACT
CCCAAACATCCAACAATCACAACCAAAGCAAGGACAAATACAAAGCCGTA
TTCCACAGCCACCAAAAGGTGAACGCACGAGACACACAGCAAACAAATTC
ATGCAACGTAGAATTGCAAGATTCCAATGAACACAAAAACACCAAAACAG
TACAAAAATATAAAAAAAAACTTTTGTAAATAATTTTTAATAACAATTTC
AATACCGGGTCTTTTCTTATCTTACAATATATATCTTCCTCTGTATAAAT
ATATCTTGTG

Coding sequence (CDS) from alignment at sc0000132_pilon:311201..314610-

>MSTRG.15166.1.p1 ID=MSTRG.15166.1.p1|Name=MSTRG.15166.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5706bp|location=Sequence derived from alignment at sc0000132_pilon:311201..314610- (Clytia hemisphaerica_ch_hm2_pilon)
ATTCACTGAATTGCAGAAATATTCGTTGATTCAAGAATCAAAAATTGAAG
ACTGCAAAAATCTTATGGATGAGTTATTTGGAAAAATCGAAGGAGAAAAT
GAAGAGGATGCATTTCCATTCGTTGACTCTCCTGAGGATCGAGTTGGTCA
TTCTCCCGAGGCAGAAAAACGAGTTGTTAACTCTCCCGAAGCAGAAGGAC
GAGTTGTACACTTTCCCGAAGTAGAAGGACGAGTTGTTCACTCTCCCAAA
GAAAAAGGACAAATTATTCGTTCTCCCGAAGCAGAAAGAAGAGTTGTTCA
CTCTCCCGAAGCAGAAGGACGAGTTGTACACTCTCCCGAAGCAGAAGGAC
GAGTTGTACACTCTCCCGAAGTAAAAGACTCTCCAGTTTCTTACCATCGA
AGAACACCAGTGGATGTCGAACAAAGGAAAGTGATGTCACCAGAACACGT
CATGAGATACACACCACTTGATGAAGATGATGACTCATCATTCTTTGAAA
ATCAACGAGTTTCTCCAGAGCTGGAATCACCAGAAGATCATGAAGAATAT
GATTATGAAAACGAGTTTGACGAGGAGCAGATGTATTATGATAACCGTTC
TGTGATTCGAAAACCACAAAGAGCTGTCATGCCGGAAGCTGTTGCTCCAA
AGGGATTACCACCAATCCCAACTCACGTCGTTTCTAACAAGAGAATTGCT
CCTGAATCCAAATTTAAAATCTTCAAAGAAAAAGTCAAATCTTACAATAA
CATTGGGTCTACTGGTTATGGAAAATCTAAACCAAGACGAAACGAATTCA
ACATGGCCACTATTTTGCCACCTGTTCAAAGCAGAGTCGTCAAACGCCAG
CCAATTGTTGTAGAATCACAACAAAGCATGCATTCTGAATACGAACTTGC
CATCAAACGTACATCCATCAAAGGAATCGTCAAACCAAGTCTTTTGAACA
AAGATATTTTCCGTTTACGTGATCCGTCAGTTCGTGTACGTGGTGCACCA
AAACAACAAGACGTTCACCAAGAGTTGAATAAAACTCCAGTTTTACCGTC
CATCTTTCAACAAAGAGATCTCATTCAAACCGTATCTCCACAAAACCAAA
TTCGCCAAAGCTGTGTTGCTCCACAAAACCAAGCTCCCCAAACCTTAGCC
TTGCCAAGGATTCCTCAACCACCAATTCAACCAAAACAATCCATCCAACA
AACTGTCTCTAGAATTCCACGACTCCCAAACATCCAACAATCACAACCAA
AGCAAGGACAAATACAAAGCCGTATTCCACAGCCACCAAAAGGTGAACGC
ACGAGACACACAGCAAACAAATTCATGCAACGTAGAATTGCAAGATTCCA
ATGAATGCAACGAACTTCACAACTATGTCACAGAACTAGAATCAGAAGTT
GATAGCTCATCCAGCATCATCAAGCAGTTAAAGAAATTTGCCTTCAAGCA
AATGTGTTCAGCTGAGAAGAAACTTTTGAGCAACATGTTCAACATTTCAT
CAGAGTCGAAATATTTGCGGGGGAATTTTCACGATCATCAGTTTGTTTAC
ATCGATAATTTGGTGTTACTTGATGAACGATTGGATGAAGTCGAGGATGT
TGACGTTTTGAAGAAAATGTACACTTATCTTAAACAAAGATGGAATCCCC
TTTAGCAATGGATTCAAATGAAATTATTTTTAACAATCAAAAACACAAAC
AACGCTCCATTATGCAACCGTTCGATTGCAAAGACACGTGGGCTGATCTA
CACAAACAAATGAATGATTCTGTTGAATACACAGACTTCTTCCGATTCAG
TCAAAGTATTTACAAGAATAGAATCAACAATGATGTCAACTTTCTTGAAA
TCATGGAAAATCCGGAAGAAATTAAAAGCGGATTCAGATATCTCCAATCG
AGATTCACTGAATTGCAGAAATATTCGTTGATTCAAGAATCAAAAATTGA
AGACTGCAAAAATCTTATGGATGAGTTATTTGGAAAAATCGAAGGAGAAA
ATGAAGAGGATGCATTTCCATTCGTTGACTCTCCTGAGGATCGAGTTGGT
CATTCTCCCGAGGCAGAAAAACGAGTTGTTAACTCTCCCGAAGCAGAAGG
ACGAGTTGTACACTTTCCCGAAGTAGAAGGACGAGTTGTTCACTCTCCCA
AAGAAAAAGGACAAATTATTCGTTCTCCCGAAGCAGAAAGAAGAGTTGTT
CACTCTCCCGAAGCAGAAGGACGAGTTGTACACTCTCCCGAAGCAGAAGG
ACGAGTTGTACACTCTCCCGAAGTAAAAGACTCTCCAGTTTCTTACCATC
GAAGAACACCAGTGGATGTCGAACAAAGGAAAGTGATGTCACCAGAACAC
GTCATGAGATACACACCACTTGATGAAGATGATGACTCATCATTCTTTGA
AAATCAACGAGTTTCTCCAGAGCTGGAATCACCAGAAGATCATGAAGAAT
ATGATTATGAAAACGAGTTTGACGAGGAGCAGATGTATTATGATAACCGT
TCTGTGATTCGAAAACCACAAAGAGCTGTCATGCCGGAAGCTGTTGCTCC
AAAGGGATTACCACCAATCCCAACTCACGTCGTTTCTAACAAGAGAATTG
CTCCTGAATCCAAATTTAAAATCTTCAAAGAAAAAGTCAAATCTTACAAT
AACATTGGGTCTACTGGTTATGGAAAATCTAAACCAAGACGAAACGAATT
CAACATGGCCACTATTTTGCCACCTGTTCAAAGCAGAGTCGTCAAACGCC
AGCCAATTGTTGTAGAATCACAACAAAGCATGCATTCTGAATACGAACTT
GCCATCAAACGTACATCCATCAAAGGAATCGTCAAACCAAGTCTTTTGAA
CAAAGATATTTTCCGTTTACGTGATCCGTCAGTTCGTGTACGTGGTGCAC
CAAAACAACAAGACGTTCACCAAGAGTTGAATAAAACTCCAGTTTTACCG
TCCATCTTTCAACAAAGAGATCTCATTCAAACCGTATCTCCACAAAACCA
AATTCGCCAAAGCTGTGTTGCTCCACAAAACCAAGCTCCCCAAACCTTAG
CCTTGCCAAGGATTCCTCAACCACCAATTCAACCAAAACAATCCATCCAA
CAAACTGTCTCTAGAATTCCACGACTCCCAAACATCCAACAATCACAACC
AAAGCAAGGACAAATACAAAGCCGTATTCCACAGCCACCAAAAGGTGAAC
GCACGAGACACACAGCAAACAAATTCATGCAACGTAGAATTGCAAGATTC
CAATGAATGCAACGAACTTCACAACTATGTCACAGAACTAGAATCAGAAG
TTGATAGCTCATCCAGCATCATCAAGCAGTTAAAGAAATTTGCCTTCAAG
CAAATGTGTTCAGCTGAGAAGAAACTTTTGAGCAACATGTTCAACATTTC
ATCAGAGTCGAAATATTTGCGGGGGAATTTTCACGATCATCAGTTTGTTT
ACATCGATAATTTGGTGTTACTTGATGAACGATTGGATGAAGTCGAGGAT
GTTGACGTTTTGAAGAAAATGTACACTTATCTTAAACAAAGATGGAATCC
CCTTTAGCAATGGATTCAAATGAAATTATTTTTAACAATCAAAAACACAA
ACAACGCTCCATTATGCAACCGTTCGATTGCAAAGACACGTGGGCTGATC
TACACAAACAAATGAATGATTCTGTTGAATACACAGACTTCTTCCGATTC
AGTCAAAGTATTTACAAGAATAGAATCAACAATGATGTCAACTTTCTTGA
AATCATGGAAAATCCGGAAGAAATTAAAAGCGGATTCAGATATCTCCAAT
CGAGATTCACTGAATTGCAGAAATATTCGTTGATTCAAGAATCAAAAATT
GAAGACTGCAAAAATCTTATGGATGAGTTATTTGGAAAAATCGAAGGAGA
AAATGAAGAGGATGCATTTCCATTCGTTGACTCTCCTGAGGATCGAGTTG
GTCATTCTCCCGAGGCAGAAAAACGAGTTGTTAACTCTCCCGAAGCAGAA
GGACGAGTTGTACACTTTCCCGAAGTAGAAGGACGAGTTGTTCACTCTCC
CAAAGAAAAAGGACAAATTATTCGTTCTCCCGAAGCAGAAAGAAGAGTTG
TTCACTCTCCCGAAGCAGAAGGACGAGTTGTACACTCTCCCGAAGCAGAA
GGACGAGTTGTACACTCTCCCGAAGTAAAAGACTCTCCAGTTTCTTACCA
TCGAAGAACACCAGTGGATGTCGAACAAAGGAAAGTGATGTCACCAGAAC
ACGTCATGAGATACACACCACTTGATGAAGATGATGACTCATCATTCTTT
GAAAATCAACGAGTTTCTCCAGAGCTGGAATCACCAGAAGATCATGAAGA
ATATGATTATGAAAACGAGTTTGACGAGGAGCAGATGTATTATGATAACC
GTTCTGTGATTCGAAAACCACAAAGAGCTGTCATGCCGGAAGCTGTTGCT
CCAAAGGGATTACCACCAATCCCAACTCACGTCGTTTCTAACAAGAGAAT
TGCTCCTGAATCCAAATTTAAAATCTTCAAAGAAAAAGTCAAATCTTACA
ATAACATTGGGTCTACTGGTTATGGAAAATCTAAACCAAGACGAAACGAA
TTCAACATGGCCACTATTTTGCCACCTGTTCAAAGCAGAGTCGTCAAACG
CCAGCCAATTGTTGTAGAATCACAACAAAGCATGCATTCTGAATACGAAC
TTGCCATCAAACGTACATCCATCAAAGGAATCGTCAAACCAAGTCTTTTG
AACAAAGATATTTTCCGTTTACGTGATCCGTCAGTTCGTGTACGTGGTGC
ACCAAAACAACAAGACGTTCACCAAGAGTTGAATAAAACTCCAGTTTTAC
CGTCCATCTTTCAACAAAGAGATCTCATTCAAACCGTATCTCCACAAAAC
CAAATTCGCCAAAGCTGTGTTGCTCCACAAAACCAAGCTCCCCAAACCTT
AGCCTTGCCAAGGATTCCTCAACCACCAATTCAACCAAAACAATCCATCC
AACAAACTGTCTCTAGAATTCCACGACTCCCAAACATCCAACAATCACAA
CCAAAGCAAGGACAAATACAAAGCCGTATTCCACAGCCACCAAAAGGTGA
ACGCACGAGACACACAGCAAACAAATTCATGCAACGTAGAATTGCAAGAT
TCCAATGAATGCAACGAACTTCACAACTATGTCACAGAACTAGAATCAGA
AGTTGATAGCTCATCCAGCATCATCAAGCAGTTAAAGAAATTTGCCTTCA
AGCAAATGTGTTCAGCTGAGAAGAAACTTTTGAGCAACATGTTCAACATT
TCATCAGAGTCGAAATATTTGCGGGGGAATTTTCACGATCATCAGTTTGT
TTACATCGATAATTTGGTGTTACTTGATGAACGATTGGATGAAGTCGAGG
ATGTTGACGTTTTGAAGAAAATGTACACTTATCTTAAACAAAGATGGAAT
CCCCTTTAGCAATGGATTCAAATGAAATTATTTTTAACAATCAAAAACAC
AAACAACGCTCCATTATGCAACCGTTCGATTGCAAAGACACGTGGGCTGA
TCTACACAAACAAATGAATGATTCTGTTGAATACACAGACTTCTTCCGAT
TCAGTCAAAGTATTTACAAGAATAGAATCAACAATGATGTCAACTTTCTT
GAAATCATGGAAAATCCGGAAGAAATTAAAAGCGGATTCAGATATCTCCA
ATCGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15166MSTRG.15166Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15166.1.p1MSTRG.15166.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15166.1.p1.exon3MSTRG.15166.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15166.1.p1.exon2MSTRG.15166.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15166.1.p1.exon1MSTRG.15166.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132_pilongenomesc0000132_pilon:311201..314610 -