MSTRG.1516.1.p1 (mRNA) -

Overview
NameMSTRG.1516.1.p1
Unique NameMSTRG.1516.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000007_pilon:1174327..1178062-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1516.1.p1 ID=MSTRG.1516.1.p1|Name=MSTRG.1516.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3736bp|location=Sequence derived from alignment at sc0000007_pilon:1174327..1178062- (Clytia hemisphaerica_ch_hm2_pilon)
TCGCGTCTGTGGCAAGATATTCGACCACCGAGGGAGATTGACAGCACCTA
TAAAAAGCTCCGTGCGCCTCACTCCTTTCATATTTTATGCTCGATGTTTT
CGAACGTGCTCTGTGATCGAAGAAAAGAATTCATCTTTTACAGTGCTTAT
TTTCTTCTTTTTTAGGTAAAATAAGATTAAATTGAAGAATGGATGTATAT
TCGTTTGGTTTGATGGTGGCATGCTTGCTTGTCATCTTTTACTTTCACAC
CAAAATCATTTTGTCAGCACTTTGTATCTTCATGGTTGTGATCACGTGCC
GCACGTACCTTTTACACTTCTATCGCAACTTGTGTGGTTCACCACGTGGC
CCCTTACCACTTCCCATCCTTGGAAACATTCATCAACTCGGTGTAATGGC
GCACGAAAATCTTCGCCTACTTTCCAAAACGTATGGTCGTGTAATGAGGG
TCTTAGTTGGAGATGATGTAGTGTATGTCATCTCAGGAGCAAATGAAATC
CTTGAAGGGTTGGTAACGAAAAGCGTGGACTTCGCAGGACGTCCTTTCAC
TTACACCTTGAATTTAACGACAGGGGGCAAAGGTAAGACCATCTAAAAAG
TGTTTAAAAACCCAATTGGAGATTCCTTTATCCATTATCAGCTAGTTTAA
TTATCAATTGAAGACCATGAAATTGATTATAGCCAACAATATTATAATTT
CATTTTCGTTCGTTTTTTAGGTATTGCTTTTGCAGATTATGATCCCAAAT
GGCGATTCTATCGAAAGATCGCTCACTCTTCCATGAGAATGTTTGGCAAC
GGATTGAAAACTATTGAGAATCTGGTGACGGAAGAAAGTCAAGCATTGCA
CACACGATTCGACAAACATGTGGGAGAGCCGATTGACCCTCATCATGATT
TAGGTGAGTGGAGAACAAGATACTTTCTGGAAAAGTCCATTAGTAGTCCA
CTATTTCATCTTTTGAATATATACAAGTGATAACAATGGCAAAACTCCTA
TCTTTCAAAACTGTTCTAAATTCTCAAATTTACTTTCTTCAGGTTTGGCA
GTATTGAATGTGGTGTTTGCCATGATTTTTGGAAGTCGGTATGACATCGA
AGACAATGAGTTTCAAGACTTGATCACCTCAAATACCATGTTTGTTCGTG
GCTTCGAATACGACAGCTACATCGACGTCTTCCCAAGTCTTCGTTTTCTT
CCAAACAAACGCATCTCCACATTGAAACACGCCATCGATATGAGACGCCC
AATCCTCCAAAAACACTTCCAAAAGCATAAGGACTCTTTTGACCCCAGTG
GTGATAATAAACGGGATCTGGCGTACGCCCTTCTAGACGCCCTACACGAG
GCGGAAACGAACGATAAGCAAGCAGTACAAGAATTTCTGCAGTACGATTT
CTTACTATCTGTTCTTGATGACATGATTGGAGCAGGTTCAGAAACAACTA
CTACCACCTTAAGATGGGCTGTTGTTTATTTGGTCAATTTCCCTGAATGC
CAACAGAAGTGTATTGAACAGATCGAAGAAGTGGTGGGCATGGATCGATT
GCCGACCATCAAGGACAAACCTTCCCTTCCATACATCGAAGCTTTCCTCC
ACGAAACATTACGCATGAGTTCCATAGCACCAATGGCCGTTCCCCATAAA
ACAACTTGCGATACAAGTATCGGAGGATACAAATTGCCGAAAGATTCAAA
GGTAAATAAACCATTCTAGTCGTCAGCTTTGTGTTTTCACCAAATATTCT
AGACGATGCTATCGTCCGTTTAAAGGTCAGTAAACGCGGGAAAAAGTTCG
GGCGTCAGGGCGGTTTACGGGAAAAAAGTGGCGGTAGAGTTTTGGAACAA
AACGTTTACACTGTAAACATCTCCACCACTGCTTACTCCACCCGAATTTA
TCACGCCTCTCCTAAACTATTCCCTTTTTTAGTGATCTTGTGTAGACGAT
CAAATATTCTTGCTGTTCTATTTTGTTAAGTATAGTATCTAGCCCATTTC
GATGAGGGATAAATGAATGAGCTAATACTCTTTTTCACAATTGTCATGTA
TTCATGCGTTGCTTTTCTTCCCGTTTCAGGTCATTTTCAATTTATACGCA
TTGCATCGTGATGAGAAAGAATGGCCAGAGCCGTTGAAATTCGATCCAAC
TCGTTTCCTTGATGATAATGGTCAATTATTGCCTCCTGGTCACAATCGCG
CCTTTCTTCCATTTTCAGCTGGACGGAGAATCTGTTTGGCAGAATCCTTG
GCTAAACTTGAACTCTTCTTAGTGATTGCACAAATGATTGCAAAATTTCA
ATTTTTACAAGCGCCTGGCCATCCCTTACCGAGCTTGGTCGGACAACCTG
GACTCTTCCTCGGACCCAAACCACATAAGATTGTGATCGACAAGCGAGTG
GCCACAGGAGCATGATCAGAACACATAGAATGATGAGAACAATAACGAGT
CTTAATCTAGTTGATTTTAATTTTTAGACAGGATTTCACAAACTTCGCTT
GCAATCCACTTTTTATTAACTTTTCGTACGCGCTATAGTTTTAGCTTAGA
ATTTGTTTTATAATTTATTAACAGTAGACGAAATTGTAGAAACGAAGTCA
TTTCCGAACTTCGATCTATTTATATGCAATGATCCGACCAAACCCTAAAA
ACGAATAATATCAAATTTTTATTACTATCATATAATTTATTATACTTTGT
ACATAAGAAATCTTAAATATAACACACCTTGTTATAAATTACAAATCAAG
TTTCTTTACCTCAAAATTTCCTATGCCACATTGCTCAGACATTTTTGTGA
CCAAGGATTGGATAACAACTTTCACTTTCATTACAAGCAAATTTGATAAT
TTTCCAAGTTTAAAGTTTAATATGATCACTGATAATCTACTGTTTATCTA
ATCTATTTTTTCCTTTCTGAGTACCATTGAGATTAACCAGATCGATGAAA
TTTACGCCCCCTAACGTGAGATTGAAGCAAGTCGGGTAAGAGTGGAGCAT
GGCTTCATATTGAACAAATATTTTCACATTTTAGTTGTAAGTCAGAAACA
GAATCACATTCAACTCTTTCGTTATTATTCAGGTCGCAAAATTGAGCTAA
TCTTCTTTTTGTCTAGACTCGTTGCTTCCGTTGCTGTCCCCACTGGTAAA
ATATACAAGCACATATATACTCTACAAAGGCATTTAAATAAAAAAACACG
CGAAACATTTTGCAGACAATAATAAGGTTTGCAATAAAACATCAAAGAAG
AGAAGGATCATTCGATAGTCAGTGAGTTGATAGAAATCTTTCCATCCACA
CTCCTTGCACTGGAACCTTCATTCGAATCCACATCATCATCACTGAAACG
TGACTGGCCATCATCACCGAAGGGTACCACCCATGTTCGATCCTCCTCGT
TCGTCACCTGGATACTCGGATGGCCTCGTTGTCGTACGCTCATGCGCAAT
TTCGGGGATGGGAGAGAACAATCTTCAAATCCCTCATTTTCCCAATAAAT
AAACGAGCGTGCTCGTTTTCTGTCTTTCGTGGACCGAAACAGACGTCTCT
TCAACCGGAGGAGCGGCTTCATGTTAGCGACGTCACAACGACCTCTCTCT
CTTTCATAATATTGTACCAACCTCTTGGCATGCTCCTCCTCCAGATTGCA
AACATTCTCGGTGAATTGATCGTAGAAGTTTTTGATAATTTCATTCGATT
CTTCGATTCGTGCCACTCGTGCGTCTAAGTGGAGAA

Coding sequence (CDS) from alignment at sc0000007_pilon:1174327..1178062-

>MSTRG.1516.1.p1 ID=MSTRG.1516.1.p1|Name=MSTRG.1516.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6288bp|location=Sequence derived from alignment at sc0000007_pilon:1174327..1178062- (Clytia hemisphaerica_ch_hm2_pilon)
GTCATTTTCAATTTATACGCATTGCATCGTGATGAGAAAGAATGGCCAGA
GCCGTTGAAATTCGATCCAACTCGTTTCCTTGATGATAATGGTCAATTAT
TGCCTCCTGGTCACAATCGCGCCTTTCTTCCATTTTCAGCTGGACGGAGA
ATCTGTTTGGCAGAATCCTTGGCTAAACTTGAACTCTTCTTAGTGATTGC
ACAAATGATTGCAAAATTTCAATTTTTACAAGCGCCTGGCCATCCCTTAC
CGAGCTTGGTCGGACAACCTGGACTCTTCCTCGGACCCAAACCACATAAG
ATTGTGATCGACAAGCGAGTGGCCACAGGAGCATGAGTTTGGCAGTATTG
AATGTGGTGTTTGCCATGATTTTTGGAAGTCGGTATGACATCGAAGACAA
TGAGTTTCAAGACTTGATCACCTCAAATACCATGTTTGTTCGTGGCTTCG
AATACGACAGCTACATCGACGTCTTCCCAAGTCTTCGTTTTCTTCCAAAC
AAACGCATCTCCACATTGAAACACGCCATCGATATGAGACGCCCAATCCT
CCAAAAACACTTCCAAAAGCATAAGGACTCTTTTGACCCCAGTGGTGATA
ATAAACGGGATCTGGCGTACGCCCTTCTAGACGCCCTACACGAGGCGGAA
ACGAACGATAAGCAAGCAGTACAAGAATTTCTGCAGTACGATTTCTTACT
ATCTGTTCTTGATGACATGATTGGAGCAGGTTCAGAAACAACTACTACCA
CCTTAAGATGGGCTGTTGTTTATTTGGTCAATTTCCCTGAATGCCAACAG
AAGTGTATTGAACAGATCGAAGAAGTGGTGGGCATGGATCGATTGCCGAC
CATCAAGGACAAACCTTCCCTTCCATACATCGAAGCTTTCCTCCACGAAA
CATTACGCATGAGTTCCATAGCACCAATGGCCGTTCCCCATAAAACAACT
TGCGATACAAGTATCGGAGGATACAAATTGCCGAAAGATTCAAAGGTATT
GCTTTTGCAGATTATGATCCCAAATGGCGATTCTATCGAAAGATCGCTCA
CTCTTCCATGAGAATGTTTGGCAACGGATTGAAAACTATTGAGAATCTGG
TGACGGAAGAAAGTCAAGCATTGCACACACGATTCGACAAACATGTGGGA
GAGCCGATTGACCCTCATCATGATTTAGATGGATGTATATTCGTTTGGTT
TGATGGTGGCATGCTTGCTTGTCATCTTTTACTTTCACACCAAAATCATT
TTGTCAGCACTTTGTATCTTCATGGTTGTGATCACGTGCCGCACGTACCT
TTTACACTTCTATCGCAACTTGTGTGGTTCACCACGTGGCCCCTTACCAC
TTCCCATCCTTGGAAACATTCATCAACTCGGTGTAATGGCGCACGAAAAT
CTTCGCCTACTTTCCAAAACGTATGGTCGTGTAATGAGGGTCTTAGTTGG
AGATGATGTAGTGTATGTCATCTCAGGAGCAAATGAAATCCTTGAAGGGT
TGGTAACGAAAAGCGTGGACTTCGCAGGACGTCCTTTCACTTACACCTTG
AATTTAACGACAGGGGGCAAAGGTCATTTTCAATTTATACGCATTGCATC
GTGATGAGAAAGAATGGCCAGAGCCGTTGAAATTCGATCCAACTCGTTTC
CTTGATGATAATGGTCAATTATTGCCTCCTGGTCACAATCGCGCCTTTCT
TCCATTTTCAGCTGGACGGAGAATCTGTTTGGCAGAATCCTTGGCTAAAC
TTGAACTCTTCTTAGTGATTGCACAAATGATTGCAAAATTTCAATTTTTA
CAAGCGCCTGGCCATCCCTTACCGAGCTTGGTCGGACAACCTGGACTCTT
CCTCGGACCCAAACCACATAAGATTGTGATCGACAAGCGAGTGGCCACAG
GAGCATGAGTTTGGCAGTATTGAATGTGGTGTTTGCCATGATTTTTGGAA
GTCGGTATGACATCGAAGACAATGAGTTTCAAGACTTGATCACCTCAAAT
ACCATGTTTGTTCGTGGCTTCGAATACGACAGCTACATCGACGTCTTCCC
AAGTCTTCGTTTTCTTCCAAACAAACGCATCTCCACATTGAAACACGCCA
TCGATATGAGACGCCCAATCCTCCAAAAACACTTCCAAAAGCATAAGGAC
TCTTTTGACCCCAGTGGTGATAATAAACGGGATCTGGCGTACGCCCTTCT
AGACGCCCTACACGAGGCGGAAACGAACGATAAGCAAGCAGTACAAGAAT
TTCTGCAGTACGATTTCTTACTATCTGTTCTTGATGACATGATTGGAGCA
GGTTCAGAAACAACTACTACCACCTTAAGATGGGCTGTTGTTTATTTGGT
CAATTTCCCTGAATGCCAACAGAAGTGTATTGAACAGATCGAAGAAGTGG
TGGGCATGGATCGATTGCCGACCATCAAGGACAAACCTTCCCTTCCATAC
ATCGAAGCTTTCCTCCACGAAACATTACGCATGAGTTCCATAGCACCAAT
GGCCGTTCCCCATAAAACAACTTGCGATACAAGTATCGGAGGATACAAAT
TGCCGAAAGATTCAAAGGTATTGCTTTTGCAGATTATGATCCCAAATGGC
GATTCTATCGAAAGATCGCTCACTCTTCCATGAGAATGTTTGGCAACGGA
TTGAAAACTATTGAGAATCTGGTGACGGAAGAAAGTCAAGCATTGCACAC
ACGATTCGACAAACATGTGGGAGAGCCGATTGACCCTCATCATGATTTAG
ATGGATGTATATTCGTTTGGTTTGATGGTGGCATGCTTGCTTGTCATCTT
TTACTTTCACACCAAAATCATTTTGTCAGCACTTTGTATCTTCATGGTTG
TGATCACGTGCCGCACGTACCTTTTACACTTCTATCGCAACTTGTGTGGT
TCACCACGTGGCCCCTTACCACTTCCCATCCTTGGAAACATTCATCAACT
CGGTGTAATGGCGCACGAAAATCTTCGCCTACTTTCCAAAACGTATGGTC
GTGTAATGAGGGTCTTAGTTGGAGATGATGTAGTGTATGTCATCTCAGGA
GCAAATGAAATCCTTGAAGGGTTGGTAACGAAAAGCGTGGACTTCGCAGG
ACGTCCTTTCACTTACACCTTGAATTTAACGACAGGGGGCAAAGGTCATT
TTCAATTTATACGCATTGCATCGTGATGAGAAAGAATGGCCAGAGCCGTT
GAAATTCGATCCAACTCGTTTCCTTGATGATAATGGTCAATTATTGCCTC
CTGGTCACAATCGCGCCTTTCTTCCATTTTCAGCTGGACGGAGAATCTGT
TTGGCAGAATCCTTGGCTAAACTTGAACTCTTCTTAGTGATTGCACAAAT
GATTGCAAAATTTCAATTTTTACAAGCGCCTGGCCATCCCTTACCGAGCT
TGGTCGGACAACCTGGACTCTTCCTCGGACCCAAACCACATAAGATTGTG
ATCGACAAGCGAGTGGCCACAGGAGCATGAGTTTGGCAGTATTGAATGTG
GTGTTTGCCATGATTTTTGGAAGTCGGTATGACATCGAAGACAATGAGTT
TCAAGACTTGATCACCTCAAATACCATGTTTGTTCGTGGCTTCGAATACG
ACAGCTACATCGACGTCTTCCCAAGTCTTCGTTTTCTTCCAAACAAACGC
ATCTCCACATTGAAACACGCCATCGATATGAGACGCCCAATCCTCCAAAA
ACACTTCCAAAAGCATAAGGACTCTTTTGACCCCAGTGGTGATAATAAAC
GGGATCTGGCGTACGCCCTTCTAGACGCCCTACACGAGGCGGAAACGAAC
GATAAGCAAGCAGTACAAGAATTTCTGCAGTACGATTTCTTACTATCTGT
TCTTGATGACATGATTGGAGCAGGTTCAGAAACAACTACTACCACCTTAA
GATGGGCTGTTGTTTATTTGGTCAATTTCCCTGAATGCCAACAGAAGTGT
ATTGAACAGATCGAAGAAGTGGTGGGCATGGATCGATTGCCGACCATCAA
GGACAAACCTTCCCTTCCATACATCGAAGCTTTCCTCCACGAAACATTAC
GCATGAGTTCCATAGCACCAATGGCCGTTCCCCATAAAACAACTTGCGAT
ACAAGTATCGGAGGATACAAATTGCCGAAAGATTCAAAGGTATTGCTTTT
GCAGATTATGATCCCAAATGGCGATTCTATCGAAAGATCGCTCACTCTTC
CATGAGAATGTTTGGCAACGGATTGAAAACTATTGAGAATCTGGTGACGG
AAGAAAGTCAAGCATTGCACACACGATTCGACAAACATGTGGGAGAGCCG
ATTGACCCTCATCATGATTTAGATGGATGTATATTCGTTTGGTTTGATGG
TGGCATGCTTGCTTGTCATCTTTTACTTTCACACCAAAATCATTTTGTCA
GCACTTTGTATCTTCATGGTTGTGATCACGTGCCGCACGTACCTTTTACA
CTTCTATCGCAACTTGTGTGGTTCACCACGTGGCCCCTTACCACTTCCCA
TCCTTGGAAACATTCATCAACTCGGTGTAATGGCGCACGAAAATCTTCGC
CTACTTTCCAAAACGTATGGTCGTGTAATGAGGGTCTTAGTTGGAGATGA
TGTAGTGTATGTCATCTCAGGAGCAAATGAAATCCTTGAAGGGTTGGTAA
CGAAAAGCGTGGACTTCGCAGGACGTCCTTTCACTTACACCTTGAATTTA
ACGACAGGGGGCAAAGGTCATTTTCAATTTATACGCATTGCATCGTGATG
AGAAAGAATGGCCAGAGCCGTTGAAATTCGATCCAACTCGTTTCCTTGAT
GATAATGGTCAATTATTGCCTCCTGGTCACAATCGCGCCTTTCTTCCATT
TTCAGCTGGACGGAGAATCTGTTTGGCAGAATCCTTGGCTAAACTTGAAC
TCTTCTTAGTGATTGCACAAATGATTGCAAAATTTCAATTTTTACAAGCG
CCTGGCCATCCCTTACCGAGCTTGGTCGGACAACCTGGACTCTTCCTCGG
ACCCAAACCACATAAGATTGTGATCGACAAGCGAGTGGCCACAGGAGCAT
GAGTTTGGCAGTATTGAATGTGGTGTTTGCCATGATTTTTGGAAGTCGGT
ATGACATCGAAGACAATGAGTTTCAAGACTTGATCACCTCAAATACCATG
TTTGTTCGTGGCTTCGAATACGACAGCTACATCGACGTCTTCCCAAGTCT
TCGTTTTCTTCCAAACAAACGCATCTCCACATTGAAACACGCCATCGATA
TGAGACGCCCAATCCTCCAAAAACACTTCCAAAAGCATAAGGACTCTTTT
GACCCCAGTGGTGATAATAAACGGGATCTGGCGTACGCCCTTCTAGACGC
CCTACACGAGGCGGAAACGAACGATAAGCAAGCAGTACAAGAATTTCTGC
AGTACGATTTCTTACTATCTGTTCTTGATGACATGATTGGAGCAGGTTCA
GAAACAACTACTACCACCTTAAGATGGGCTGTTGTTTATTTGGTCAATTT
CCCTGAATGCCAACAGAAGTGTATTGAACAGATCGAAGAAGTGGTGGGCA
TGGATCGATTGCCGACCATCAAGGACAAACCTTCCCTTCCATACATCGAA
GCTTTCCTCCACGAAACATTACGCATGAGTTCCATAGCACCAATGGCCGT
TCCCCATAAAACAACTTGCGATACAAGTATCGGAGGATACAAATTGCCGA
AAGATTCAAAGGTATTGCTTTTGCAGATTATGATCCCAAATGGCGATTCT
ATCGAAAGATCGCTCACTCTTCCATGAGAATGTTTGGCAACGGATTGAAA
ACTATTGAGAATCTGGTGACGGAAGAAAGTCAAGCATTGCACACACGATT
CGACAAACATGTGGGAGAGCCGATTGACCCTCATCATGATTTAGATGGAT
GTATATTCGTTTGGTTTGATGGTGGCATGCTTGCTTGTCATCTTTTACTT
TCACACCAAAATCATTTTGTCAGCACTTTGTATCTTCATGGTTGTGATCA
CGTGCCGCACGTACCTTTTACACTTCTATCGCAACTTGTGTGGTTCACCA
CGTGGCCCCTTACCACTTCCCATCCTTGGAAACATTCATCAACTCGGTGT
AATGGCGCACGAAAATCTTCGCCTACTTTCCAAAACGTATGGTCGTGTAA
TGAGGGTCTTAGTTGGAGATGATGTAGTGTATGTCATCTCAGGAGCAAAT
GAAATCCTTGAAGGGTTGGTAACGAAAAGCGTGGACTTCGCAGGACGTCC
TTTCACTTACACCTTGAATTTAACGACAGGGGGCAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1516MSTRG.1516Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1516.1.p1MSTRG.1516.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1516.1.p1.exon4MSTRG.1516.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1516.1.p1.exon3MSTRG.1516.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1516.1.p1.exon2MSTRG.1516.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1516.1.p1.exon1MSTRG.1516.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007_pilongenomesc0000007_pilon:1174327..1178062 -