MSTRG.15119.1.p1 (mRNA) -

Overview


Name	MSTRG.15119.1.p1
Unique Name	MSTRG.15119.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000131_pilon:589692..592340-
coding sequence from alignment at sc0000131_pilon:589692..592340-

mRNA from alignment at sc0000131_pilon:589692..592340-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.15119.1.p1 ID=MSTRG.15119.1.p1|Name=MSTRG.15119.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2649bp|location=Sequence derived from alignment at sc0000131_pilon:589692..592340- (Clytia hemisphaerica_ch_hm2_pilon)
TAGTTTAGTAGAGACACTTTGACAAGTTCGAGTACTATTTAAAATCACAA
AGATAACAGCCACAAAAGCAAGCTTATTGACAATGAACTGGTATACTATT
TGGTGTCTTGTTTACTTGCTTCATGGCATTGTGAGCTATTCAATCAATTT
ACTTTCTGAAGAAAATGGAAACCAGGTGAGTTTGTGCCCGGGGGGGCACT
TAGGCAAAAATAGGTACGGGGACGTGCCGCTGGTCAGGGTACCTTTTTCA
GTGTTGCAGAATTACTGACAGGGTATCTAAAATTGCAAAATCCTGATCTG
ACAGGGGCGCAATTTCATGATGTGTGTCTGACAGGGTCTGTTTTTGTCGT
TTTTGCATGTAGAGTTCTTTTGCAAATCGTTTTGACGCGGCGGTGAGCAG
ACCCCTGCGAGGGGCAAACAGCTTTTTGCAAATACTTATCGCAGGCCAAC
ACAGGCGCTTTGCTGCTGTTGTCTCGCACCACACGCCCGTCATTGCGCCC
TCTTGAAGGGATCGAGGCTAATTTCAAAGATACCTCTATTGAACTATTTA
GAACAAATGTTCAGCTGAATAGTGGTATTAACAACATTGTTTCCAGATTT
TGATTCAGATTTTTTATTTCAACTGCTATGTTTTGTTTCTTCCCATATCG
TTGAGACATTCCGCTGTAGGCTTAGAACAGCTGTAGAACAGAACAATACT
CTCGACTCTTCTGTATTAGTCTCATTGACATCCTCTCGTCCTCTTTGCAA
AAGCGTCGTTTTAAAGCTTATACTTGCAAAATAGTCCTTTCAAACCTAGA
CTTCATCAGTTCTGATTTTAAGAACCTTACCGTAGGATCACATAAGATTC
CGATTCCTGCTATAACATTCCACTTGCCATTTGAAAACAAATGATAGTTA
GTTCCGACTAGTTGAAAACAATTAAACAAGTTGGCTGATTATAAAAATAA
TCAAAACATTACTTCTTTTTTGCGTTTTATGATTTGCCAGCTTGGATTAA
TTCACTTTTTCCTGCCAGTATGCCCGGGAAAACTAGCGGAATGATCCCGG
AAAAGCGCCAGTATTGCTAGAGCGAGAATCGGAATCTTATGTGATCCTAC
GGTAATCCTGGAAACGGATATCTGAAATTTATCTACGTATCATTATTAAG
TTTTTTGAAACTTTAGCGTTCTATTTGTTCTTGTACATCTATAATATTGT
ATGACCTTTCTAGCTTTGAAACACATTTTGTGGAAGTAGAGATTGATGAT
TTTGAATAATATTAATGATATGTTTACTTTGTAATTTCATAACTCTCGTC
GTCGATTCTTTTGGCCGGTTTTCCAGGTATTGAGGTTTAATGTTTATGCA
ATGCTGTAGTTTTTTAGCCTGGAAATGTTGATATCACGTTATACTTTACG
AAAAACGCGAAAAACGCGAAAAACGTGTATAAAGAGTAGGTTTTTCACAG
TAGAATCTGACAGGGTAGGTTTTTCATCGAATTTTTCTTCTGACAGGGTC
TATTTTTCATCAAATTCCATTTCTGACAGGATCGACTTTTGAAACTCCAG
CGGCACGTCCCCGTCGGTCGTCAAGGTCAGTGCCCCCCCGGGAGTTTGTG
CTTATTTTGATAAAAAAGGACCCATCGATTGGTTGATCCTGAAAGTTCTC
CTAAATATTGCGCTGCTAGGTTAGGAGTGCAAGAGTTTTACTGAAAGGAA
ATACACAATGACCAAACGAAATGTCAGTCAGCTTTCAAAACTGTTATCTT
TGATTTCTTTCTCTTATTAGCAGCCCAAATTAAAATCCATGAAAACCAAG
GGGAATGGAGACAAGCATTTGAAAATTTAAACTATTCGTAGCCAAACATT
TCTTATCTTGCAGGTACTGGAAAAAGAAGAAGGTAACATTTCACCGAGAC
CAAGTTACGAGACACTATACCGAAAAACGAAGGGCGTTTGTGTAACCAAC
AAACCAGAAGTTGGTGTAAAGGTAAACCTCACCTCATCCCAAACAACAAG
TAGATCACGAAAATGGTGGCCCTTCTCTTTTTCTGCTTTCTATGCAAATG
TAAAGACCTTTTTGTCCTTCTGGTGGCTGGGCATCGTTGTTCAAATATAC
AACAAAGTAGTAAATGGCCTTGTCATCTTTATCTCAGCCTTTCTCGCAGA
GTTTCAACGACAACTGCAATATCACCCTGACTTCAACTTTCTATTTATGA
TACTGTATGGGTGTCTGGTAAATTTTATCATCAAATTGGTTGATTGGATT
TGTATACTCCCACAATTTAACCTACTTCGAGTAATGGTTACATTAAACCT
TAGTATTGTGTTTTTCGCGATGGCAATAGAAAAACAATACTTCAAACTGA
CATTTTTCCTGGCTATCGTGTTCTTTTCTTATGATAATAATTGAAGACTC
GTCTAGATTAACAAGTAACTACAAAACACGGTGTTTTGATAACTACAAAA
CACGATGTTTTGATGTAAACTTCATGGGAAATCATGGTACCGTTTGGGCA
CGTTTAAAATTTCTTGTATAAAAAAATATTTTGAGGAGGTATGATAATTT
GATTTGTAAGTACTTAGTTGCTGGGCGGCTCATGCTATGTAAACAGTTTT
ATAAGGCTAGGTTTTTCGAGTCCTCTAAATACACTGTAAGGGTGTACTT

Coding sequence (CDS) from alignment at sc0000131_pilon:589692..592340-

>MSTRG.15119.1.p1 ID=MSTRG.15119.1.p1|Name=MSTRG.15119.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1248bp|location=Sequence derived from alignment at sc0000131_pilon:589692..592340- (Clytia hemisphaerica_ch_hm2_pilon)
GTACTGGAAAAAGAAGAAGGTAACATTTCACCGAGACCAAGTTACGAGAC
ACTATACCGAAAAACGAAGGGCGTTTGTGTAACCAACAAACCAGAAGTTG
GTGTAAAGGTAAACCTCACCTCATCCCAAACAACAAGTAGATCACGAAAA
TGGTGGCCCTTCTCTTTTTCTGCTTTCTATGCAAATGTAAAGACCTTTTT
GTCCTTCTGGTGGCTGGGCATCGTTGTTCAAATATACAACAAAGTAGTAA
ATGGCCTTGTCATCTTTATCTCAGCCTTTCTCGCAGAGTTTCAACGACAA
CTGCAATATCACCCTGACTTCAACTTTCTATTTATGATACTGTATGGGTG
TCTGGTAAATTTTATCATCAAATTGGTTGATTGGATTTGTATACTCCCAC
AATTTAACCTACTTCGAGTAATGGTTACATTAAACCTTAGTATTGTGTTT
TTCGCGATGGCAATAGAAAAACAATACTTCAAACTGACATTTTTCCTGGC
TATCGTGTTCTTTTCTTATGATAATAATTGAATGAACTGGTATACTATTT
GGTGTCTTGTTTACTTGCTTCATGGCATTGTGAGCTATTCAATCAATTTA
CTTTCTGAAGAAAATGGAAACCAGGTACTGGAAAAAGAAGAAGGTAACAT
TTCACCGAGACCAAGTTACGAGACACTATACCGAAAAACGAAGGGCGTTT
GTGTAACCAACAAACCAGAAGTTGGTGTAAAGGTAAACCTCACCTCATCC
CAAACAACAAGTAGATCACGAAAATGGTGGCCCTTCTCTTTTTCTGCTTT
CTATGCAAATGTAAAGACCTTTTTGTCCTTCTGGTGGCTGGGCATCGTTG
TTCAAATATACAACAAAGTAGTAAATGGCCTTGTCATCTTTATCTCAGCC
TTTCTCGCAGAGTTTCAACGACAACTGCAATATCACCCTGACTTCAACTT
TCTATTTATGATACTGTATGGGTGTCTGGTAAATTTTATCATCAAATTGG
TTGATTGGATTTGTATACTCCCACAATTTAACCTACTTCGAGTAATGGTT
ACATTAAACCTTAGTATTGTGTTTTTCGCGATGGCAATAGAAAAACAATA
CTTCAAACTGACATTTTTCCTGGCTATCGTGTTCTTTTCTTATGATAATA
ATTGAATGAACTGGTATACTATTTGGTGTCTTGTTTACTTGCTTCATGGC
ATTGTGAGCTATTCAATCAATTTACTTTCTGAAGAAAATGGAAACCAG

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.15119	MSTRG.15119	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.15119.1.p1.exon2	MSTRG.15119.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.15119.1.p1.exon1	MSTRG.15119.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.15119.1.p1	MSTRG.15119.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000131_pilon	genome	sc0000131_pilon:589692..592340 -

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MSTRG.15119.1.p1 (mRNA) -