MSTRG.14880.1.p1 (mRNA) -

Overview
NameMSTRG.14880.1.p1
Unique NameMSTRG.14880.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000127_pilon:212874..214463+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14880.1.p1 ID=MSTRG.14880.1.p1|Name=MSTRG.14880.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1590bp|location=Sequence derived from alignment at sc0000127_pilon:212874..214463+ (Clytia hemisphaerica_ch_hm2_pilon)
GTCGAAATGGAATCACCTACAAGATCAATCACGCCCTCTTGTACGCCACC
GCCATCTCTAGCGACGTTGAAGCGCCCTGACAGTTGTTATTCAAGTGGTG
GCGAGACGCCACCTTCAACTGATAGACATTGCAGTCCAACTTTCTTCACA
ACAGATGACCAACACGTCACTTTGGTTTGTGAAAATCTGATAAATGCTGG
TAAATTTGATCGCCTTGAACGTTTCATATGGGCTGTTCCGGCTACTGAGA
AATCCCGTAATGCGGAAATTATATTGATAGCTAAAAGTTATTTAGCGTTT
CGTAGTGGACAGTTCGAATTGCTGTACGAGCTTCTACAAAGACGACCTTT
CGCCAAAAAGTATCACCGGCAACTGCAATATCTATGGCGGACCGCCCGCT
ACATCGAAGCCGAACGTGCACGAGGACGCGCGCTCGGTAGCGTGGGAAAG
TATCGGATTCGCAGGAAATTCCCGTTACCTTACACCATCTGGGACGGAGA
ATGCATGTCTTATTGTTTCCGTGAAGAAGCTCGTGAAATTTTGAACGCCA
TGTATAAAAGAACGCCTTATCCGACCGCCCAAGAGAAATATAGCATCGCT
CAACGTGCTAACCTGAGTGTAACGCAAGTCAGCAACTGGTTCAAGAATAA
ACGACAGCGTGCTCGAGCAAAGAAAGCTGAAGCTAAAGACAGGTAATTGA
CGGATATATTGTGAATTTTatacttttaaaatctttgcgTTAAGGTGGTC
GAACATTTCtgattaatttttatttcacaGAACTGCCTTCCCTATGTCTT
GGTAActattttaaaaaactttttgtatcaaaaattataatttgtatctt
tttattatatttagtaCCGAAACCAGCATCAATGAAGATGCCAGTATCAC
CAGAACCAAATTAGATGACAATTATCATCATCATACTCACACTATCAAAC
TTGAAGATAACCTTCCTTCTCCGACGATCCCCAAAAGATGTTCTTCTCCA
CAACAACTTTTAAAACCGATGATAAAAATGGAGTATCAGAAACCAACACC
ACCGTTCAAACCTATTCCTCATTTACCAGCAATGACGGAGGACCTGCTTC
ACCATACAAAATCACCAAAGCGAAGACTATTCATGACTCCGACACCGTAT
CATCCATATCTAGCCTCACTTCATCATCTCCCACGTACAGAATACAGGCT
AATGCCACCAGCATTGACGTCATCATATCATAAACTTAGTCGTGGTCATA
TCCAGCCTTACGTTGTTGTGCCAAGAAAACGAATTTTAGTCGATAGACCT
CGTTTGGTACCAGACTTCTATAGAACACCTCTGGATTATCGGCATCGTGC
GATTTCTGATCGACATTGTGAACAATGCAACAAAGACCTACATTAAATTA
AGATGGATTTTTGAAAGCATGTCGTTTAAAACGATCCTTGTCATAtttat
taaaatataatttatttCCATTTTTAGGACTTTAGGTTTTGTTGTTCTTG
TAAGagttttaaaataatattattcTAGATATATCCTTGTAACataattt
atttgtaaaatacaatattaaaaatgaaacttaaactaaa

Coding sequence (CDS) from alignment at sc0000127_pilon:212874..214463+

>MSTRG.14880.1.p1 ID=MSTRG.14880.1.p1|Name=MSTRG.14880.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2448bp|location=Sequence derived from alignment at sc0000127_pilon:212874..214463+ (Clytia hemisphaerica_ch_hm2_pilon)
GTCGAAATGGAATCACCTACAAGATCAATCACGCCCTCTTGTACGCCACC
GCCATCTCTAGCGACGTTGAAGCGCCCTGACAGTTGTTATTCAAGTGGTG
GCGAGACGCCACCTTCAACTGATAGACATTGCAGTCCAACTTTCTTCACA
ACAGATGACCAACACGTCACTTTGGTTTGTGAAAATCTGATAAATGCTGG
TAAATTTGATCGCCTTGAACGTTTCATATGGGCTGTTCCGGCTACTGAGA
AATCCCGTAATGCGGAAATTATATTGATAGCTAAAAGTTATTTAGCGTTT
CGTAGTGGACAGTTCGAATTGCTGTACGAGCTTCTACAAAGACGACCTTT
CGCCAAAAAGTATCACCGGCAACTGCAATATCTATGGCGGACCGCCCGCT
ACATCGAAGCCGAACGTGCACGAGGACGCGCGCTCGGTAGCGTGGGAAAG
TATCGGATTCGCAGGAAATTCCCGTTACCTTACACCATCTGGGACGGAGA
ATGCATGTCTTATTGTTTCCGTGAAGAAGCTCGTGAAATTTTGAACGCCA
TGTATAAAAGAACGCCTTATCCGACCGCCCAAGAGAAATATAGCATCGCT
CAACGTGCTAACCTGAGTGTAACGCAAGTCAGCAACTGGTTCAAGAATAA
ACGACAGCGTGCTCGAGCAAAGAAAGCTGAAGCTAAAGACAGtaCCGAAA
CCAGCATCAATGAAGATGCCAGTATCACCAGAACCAAATTAGATGACAAT
TATCATCATCATACTCACACTATCAAACTTGAAGATAACCTTCCTTCTCC
GACGATCCCCAAAAGATGTTCTTCTCCACAACAACTTTTAAAACCGATGA
TAAAAATGGAGTATCAGAAACCAACACCACCGTTCAAACCTATTCCTCAT
TTACCAGCAATGACGGAGGACCTGCTTCACCATACAAAATCACCAAAGCG
AAGACTATTCATGACTCCGACACCGTATCATCCATATCTAGCCTCACTTC
ATCATCTCCCACGTACAGAATACAGGCTAATGCCACCAGCATTGACGTCA
TCATATCATAAACTTAGTCGTGGTCATATCCAGCCTTACGTTGTTGTGCC
AAGAAAACGAATTTTAGTCGATAGACCTCGTTTGGTACCAGACTTCTATA
GAACACCTCTGGATTATCGGCATCGTGCGATTTCTGATCGACATTGTGAA
CAATGCAACAAAGACCTACATTAAGTCGAAATGGAATCACCTACAAGATC
AATCACGCCCTCTTGTACGCCACCGCCATCTCTAGCGACGTTGAAGCGCC
CTGACAGTTGTTATTCAAGTGGTGGCGAGACGCCACCTTCAACTGATAGA
CATTGCAGTCCAACTTTCTTCACAACAGATGACCAACACGTCACTTTGGT
TTGTGAAAATCTGATAAATGCTGGTAAATTTGATCGCCTTGAACGTTTCA
TATGGGCTGTTCCGGCTACTGAGAAATCCCGTAATGCGGAAATTATATTG
ATAGCTAAAAGTTATTTAGCGTTTCGTAGTGGACAGTTCGAATTGCTGTA
CGAGCTTCTACAAAGACGACCTTTCGCCAAAAAGTATCACCGGCAACTGC
AATATCTATGGCGGACCGCCCGCTACATCGAAGCCGAACGTGCACGAGGA
CGCGCGCTCGGTAGCGTGGGAAAGTATCGGATTCGCAGGAAATTCCCGTT
ACCTTACACCATCTGGGACGGAGAATGCATGTCTTATTGTTTCCGTGAAG
AAGCTCGTGAAATTTTGAACGCCATGTATAAAAGAACGCCTTATCCGACC
GCCCAAGAGAAATATAGCATCGCTCAACGTGCTAACCTGAGTGTAACGCA
AGTCAGCAACTGGTTCAAGAATAAACGACAGCGTGCTCGAGCAAAGAAAG
CTGAAGCTAAAGACAGtaCCGAAACCAGCATCAATGAAGATGCCAGTATC
ACCAGAACCAAATTAGATGACAATTATCATCATCATACTCACACTATCAA
ACTTGAAGATAACCTTCCTTCTCCGACGATCCCCAAAAGATGTTCTTCTC
CACAACAACTTTTAAAACCGATGATAAAAATGGAGTATCAGAAACCAACA
CCACCGTTCAAACCTATTCCTCATTTACCAGCAATGACGGAGGACCTGCT
TCACCATACAAAATCACCAAAGCGAAGACTATTCATGACTCCGACACCGT
ATCATCCATATCTAGCCTCACTTCATCATCTCCCACGTACAGAATACAGG
CTAATGCCACCAGCATTGACGTCATCATATCATAAACTTAGTCGTGGTCA
TATCCAGCCTTACGTTGTTGTGCCAAGAAAACGAATTTTAGTCGATAGAC
CTCGTTTGGTACCAGACTTCTATAGAACACCTCTGGATTATCGGCATCGT
GCGATTTCTGATCGACATTGTGAACAATGCAACAAAGACCTACATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14880MSTRG.14880Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14880.1.p1.exon1MSTRG.14880.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14880.1.p1.exon2MSTRG.14880.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14880.1.p1MSTRG.14880.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127_pilongenomesc0000127_pilon:212874..214463 +